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1.
Chembiochem ; 24(12): e202200731, 2023 06 15.
Artigo em Inglês | MEDLINE | ID: mdl-36944581

RESUMO

Kinetic studies revealed that nitrate radicals (NO3 ⋅), which are formed through reaction of the noxious air pollutants nitrogen dioxide (NO2 ⋅) and ozone (O3 ), very rapidly oxidize phenylalanine residues in an aqueous environment, with overall rate coefficients in the 108 -109  M-1 s-1 range. With amino acids and dipeptides as model systems, the data suggest that the reaction proceeds via a π-complex between NO3 ⋅ and the aromatic ring in Phe, which subsequently decays into a charge transfer (CT) complex. The stability of the π-complex is sequence-dependent and is increased when Phe is at the N terminus of the dipeptide. Computations revealed that the considerably more rapid radical-induced oxidation of Phe residues in both neutral and acidic aqueous environments, compared to acetonitrile, can be attributed to stabilization of the CT complex by the protic solvent; this clearly highlights the health-damaging potential of exposure to combined NO2 ⋅ and O3 .


Assuntos
Nitratos , Dióxido de Nitrogênio , Nitratos/química , Dióxido de Nitrogênio/química , Fenilalanina/química , Cinética , Oxirredução , Dipeptídeos/química
2.
Org Biomol Chem ; 21(11): 2390-2397, 2023 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-36857623

RESUMO

Absolute second-order rate coefficients for the reaction of the N- and C-protected amino acids tyrosine (Tyr), tryptophan (Trp), methionine (Met) and proline (Pro) with triethylamine-derived aliphatic peroxyl radical TEAOO˙, which was used as a model for lipid peroxyl radicals, were determined using laser flash photolysis. For Ac-Tyr-OMe a rate coefficient of 1.4 × 104 M-1 s-1 was obtained, whereas the reactions with Ac-Trp-OMe and Ac-Met-OMe were slower by a factor of 4 and 6, respectively. For the reaction with Ac-Pro-OMe only an upper value of 103 M-1 s-1 could be determined, suggesting that Pro residues are not effective traps for lipid peroxyl radicals. Density functional theory (DFT) calculations revealed that the reactions proceed via radical hydrogen atom transfer (HAT) from the Cα position, indicating that the rate is determined by the exothermicity of the reaction. In the case of Ac-Tyr-OMe, HAT from the phenolic OH group is the kinetically preferred pathway, which shuts down when hydrogen bonding with an amine occurs. In an alkaline environment, where the phenolic OH group is deprotonated, the reaction is predicted to occur preferably at Cß, likely through a proton-coupled electron transfer (PCET) mechanism.

3.
Environ Sci Technol ; 56(12): 7687-7695, 2022 06 21.
Artigo em Inglês | MEDLINE | ID: mdl-35671332

RESUMO

The rate of oxidative damage of aliphatic amino acids and dipeptides by the environmental pollutant nitrate radical (NO3·) in an aqueous acidic environment was studied by laser flash photolysis. The reactivity dropped by a factor of about four for amino acid residues with secondary amide bonds and by a factor of up to nearly 20 for amino acid residues with tertiary amide bonds, compared with that in acetonitrile. According to density functional theory studies, the lower reactivity is due to protonation of the amide moiety, whereas in neutral water, hydrogen bonding with the amide should have little impact on the absolute reaction rate compared with that in acetonitrile. This finding can be rationalized by the high reactivity and broad reaction pattern of NO3·. Although hydrogen bonding involving the amide group raises the energies associated with some electron transfer processes, alternative low-energy pathways remain available so that the overall reaction rate is barely affected. The undiminished high reactivity of NO3· toward aliphatic amino acid residues in a neutral aqueous environment highlights the health-damaging potential of exposure to the combined air pollutants nitrogen dioxide (NO2·) and ozone (O3).


Assuntos
Poluentes Ambientais , Acetonitrilas , Amidas , Aminoácidos/química , Ácidos Graxos , Estresse Oxidativo , Água
4.
Chemistry ; 27(5): 1620-1625, 2021 Jan 21.
Artigo em Inglês | MEDLINE | ID: mdl-33289186

RESUMO

The AgI -promoted reaction of thiolactams with N-Boc amino acids yields an N-(α-aminoacyl) lactam that can rearrange through an acyl transfer process. Boc-deprotection results in convergence to the ring-expanded adduct, thereby facilitating an overall insertion of an amino acid into the thioamide bond to generate medium-sized heterocycles. Application to the site-specific insertion of amino acids into cyclic peptides is demonstrated.


Assuntos
Aminoácidos/química , Imidas/química , Lactamas/química , Tioamidas/química , Peptídeos Cíclicos/química
5.
Org Biomol Chem ; 19(1): 259-272, 2021 01 06.
Artigo em Inglês | MEDLINE | ID: mdl-33191414

RESUMO

The reactions of α,ß-unsaturated N-acyliminium ions, generated in situ from 4(S)-O-substitutedhydroxy-5-hydroxy-5-vinyl-N-alkylpyrrolidin-2-ones, with allylsilanes and indoles leading to the formation of spirocyclic heterocycles, are reported. Six single crystal X-ray structures and extensive 2D NMR experiments confirmed the structures and stereochemistries of these products. In addition, computational studies provided mechanistic insights and an understanding of the stereochemical outcomes of these reactions.

6.
Org Biomol Chem ; 18(35): 6949-6957, 2020 09 21.
Artigo em Inglês | MEDLINE | ID: mdl-32936182

RESUMO

Tertiary amides, such as in N-acylated proline or N-methyl glycine residues, react rapidly with nitrate radicals (NO3˙) with absolute rate coefficients in the range of 4-7 × 108 M-1 s-1 in acetonitrile. The major pathway proceeds through oxidative electron transfer (ET) at nitrogen, whereas hydrogen abstraction is only a minor contributor under these conditions. However, steric hindrance at the amide, for example by alkyl side chains at the α-carbon, lowers the rate coefficient by up to 75%, indicating that NO3˙-induced oxidation of amide bonds proceeds through initial formation of a charge transfer complex. Furthermore, the rate of oxidative damage of proline and N-methyl glycine is significantly influenced by its position in a peptide. Thus, neighbouring peptide bonds, particularly in the N-direction, reduce the electron density at the tertiary amide, which slows down the rate of ET by up to one order of magnitude. The results from these model studies suggest that the susceptibility of proline residues in peptides to radical-induced oxidative damage should be considerably reduced, compared with the single amino acid.

7.
Phys Chem Chem Phys ; 22(4): 2130-2141, 2020 Jan 28.
Artigo em Inglês | MEDLINE | ID: mdl-31912066

RESUMO

In free radicals the singly occupied molecular orbital (SOMO) typically has the highest energy. Recent examples of distonic radical anions were found, however, to disobey the usual orbital configuration, with the singly occupied molecular orbital buried energetically underneath doubly occupied orbitals. This unusual ordering of electrons, which contradicts the aufbau principle, has been characterized as SOMO-HOMO orbital conversion and is expected to perturb radical anion reactivity by branching toward anion-driven over radical-driven processes. Here, we use ion trap mass spectrometry and ab initio calculations to demonstrate that SOMO-HOMO orbital conversion influences the reactivity of a distonic peroxyl radical anion. Experimentally, we generated a distonic radical anion of ß-hydroxy glutaric acid, ˙CH2CH(OH)CH2C(O)O-, and investigated its subsequent reaction with O2 in the gas phase. Theoretical calculations predict that reactions proceed through five isomeric C4H6O5˙- intermediates, two of which exhibit SOMO-HOMO conversion. The detected product ions, corresponding to loss of ˙OH + CO2, ˙OH + HCHO, HO2˙, and HO2˙ + CO2 from the peroxyl radical, can all be reconciled by the proposed reaction mechanism. Finally, we compare the oxygen recombination reaction of the distonic radical ion to the corresponding neutral radical (i.e., ˙CH2CH(OH)CH2C(O)OH). These calculations demonstrate that SOMO-HOMO conversion results in channel switching in the distonic radical anion, suppressing radical-driven mechanisms and promoting pathways that directly involve the anion site.

8.
J Org Chem ; 84(6): 3405-3418, 2019 03 15.
Artigo em Inglês | MEDLINE | ID: mdl-30742433

RESUMO

Kinetic and computational data reveal a complex behavior of the important environmental free radical oxidant NO3• in its reactions with aliphatic amino acids and di- and tripeptides, suggesting that attack at the amide N-H bond in the peptide backbone is a highly viable pathway, which proceeds through a proton-coupled electron transfer (PCET) mechanism with a rate coefficient of about 1 × 106 M-1 s-1 in acetonitrile. Similar rate coefficients were determined for hydrogen abstraction from the α-carbon and from tertiary C-H bonds in the side chain. The obtained rate coefficients for the reaction of NO3• with aliphatic di- and tripeptides suggest that attack occurs at all of these sites in each individual amino acid residue, which makes aliphatic peptide sequences highly vulnerable to NO3•-induced oxidative damage. No evidence for amide neighboring group effects, which have previously been found to facilitate radical-induced side-chain damage in phenylalanine, was found for the reaction of NO3• with side chains in aliphatic peptides.

9.
Org Biomol Chem ; 17(29): 7025-7035, 2019 07 24.
Artigo em Inglês | MEDLINE | ID: mdl-31287488

RESUMO

An investigation of the reactivity of α-cyclopropyl N-acyliminium ions towards indoles has resulted in the unprecedented synthesis of 5-cyclopropyl-5-(3-indoyl)pyrrolidin-2-ones via 1,2-addition reactions and, in the case of highly electron deficient indoles and electron rich arenes, spiroheterocycles via sequential homoconjugate and 1,2-addition reactions with often high diastereoselective control at the C-5 quaternary stereocentres. Computational studies provided support for the proposed mechanisms and stereochemical outcome of these reactions, clearly showing that the 1,2-addition pathway is kinetically controlled. In reactions where the 1,2-adduct is destabilised, for example when the arene ring is less nucleophilic, the 1,2-addition is reversible and the thermodynamically preferred homoconjugate addition and subsequent rearrangement and cyclisation reactions become the major pathway.

10.
Chembiochem ; 19(9): 922-926, 2018 05 04.
Artigo em Inglês | MEDLINE | ID: mdl-29460322

RESUMO

In nature, proteins serve as media for long-distance electron transfer (ET) to carry out redox reactions in distant compartments. This ET occurs either by a single-step superexchange or through a multi-step charge hopping process, which uses side chains of amino acids as stepping stones. In this study we demonstrate that Phe can act as a relay amino acid for long-distance electron hole transfer through peptides. The considerably increased susceptibility of the aromatic ring to oxidation is caused by the lone pairs of neighbouring amide carbonyl groups, which stabilise the Phe radical cation. This neighbouring-amide-group effect helps improve understanding of the mechanism of extracellular electron transfer through conductive protein filaments (pili) of anaerobic bacteria during mineral respiration.


Assuntos
Amidas/química , Peptídeos/química , Fenilalanina/química , Transporte de Elétrons , Elétrons , Cinética , Modelos Moleculares , Termodinâmica
11.
Acc Chem Res ; 49(10): 2136-2145, 2016 10 18.
Artigo em Inglês | MEDLINE | ID: mdl-27668965

RESUMO

Air pollution is responsible for the premature death of about 7 million people every year. Ozone (O3) and nitrogen dioxide (NO2•) are the key gaseous pollutants in the troposphere, which predominantly result from combustion processes. Their inhalation leads to reactions with constituents in the airway surface fluids (ASF) of the respiratory tract and/or lungs. ASF contain small molecular-weight antioxidants, which protect the underlying epithelial cells against oxidative damage. When this defense system is overwhelmed, proteins and lipids present on cell surfaces or within the ASF become vulnerable to attack. The resulting highly reactive protein and lipid oxidation products could subsequently damage the epithelial cells through secondary reactions, thereby causing inflammation. While reactions of NO2• with biological molecules are considered to proceed through radical pathways, the biological effect of O3 is attributed to its high reactivity with π systems. Because O3 and NO2• always coexist in the polluted ambient atmosphere, synergistic effects resulting from in situ formed strongly oxidizing nitrate radicals (NO3•) may also require consideration. For example, in vitro product studies revealed that phenylalanine, which is inert not only to oxidants produced through biochemical processes, but also to NO2• or O3 in isolation, is damaged by NO3•. The reaction is initiated by oxidation of the aromatic ring and, depending on the availability of NO2•, leads to formation of nitrophenylalanine or ß-nitrooxyphenylalanine, which could serve as marker for NO3•-induced oxidative damage in peptides. More easily oxidizable aromatic amino acids are directly attacked by NO2• and are converted to the same products independent of whether O3 is also present. Remarkably, NO2•-induced oxidative damage in peptides occurs not only through the well-established radical oxidation of peptide side chains, but also through an unprecedented fragmentation/rearrangement of the peptide backbone. This process is initiated by a nonradical N-nitrosation of a peptide bond involving the dimer of NO2•, i.e., N2O4, and contracts the peptide chain in the N → C direction by expelling one amino acid residue with simultaneous fusion of the remaining molecular termini, thereby forming a new peptide bond. This peptide cleavage could potentially be highly relevant for peptide segments with "nonvulnerable" side chains closer to the terminus that are not tied up in complex secondary and tertiary structures and therefore accessible for environmental oxidants. Likewise, NO2• reacts with cholesterol at the C═C moiety through an ionic mechanism, which leads to formation of 6-nitrocholesterol in the presence of moisture. Contrary to common belief, this clearly shows that ionic chemistry, in particular nitrosation reactions by intermediately formed NO+, requires consideration when assessing NO2• toxicity. This conclusion is supported by recent work by Colussi et al. (Enami, S.; Hoffmann, M. R.; Colussi, A. J. Absorption of inhaled NO2. J. Phys. Chem. B. 2009, 113, 7977-7981), who showed that anions in the airway surfaces fluids mediate NO2• absorption by catalyzing its hydrolytic disproportionation into NO2-/HNO2 and NO3-. These findings could be the key to our understanding why NO2•, despite its low water solubility, has such pronounced biological effects in vivo.


Assuntos
Poluentes Ambientais/química , Nitratos/química , Dióxido de Nitrogênio/química , Radicais Livres/química , Humanos , Oxirredução , Oxigênio/química
12.
J Phys Chem A ; 121(28): 5290-5300, 2017 Jul 20.
Artigo em Inglês | MEDLINE | ID: mdl-28644629

RESUMO

A novel precursor to the distonic O- and C-centered radical cations Oxo+O• and Oxo+C• was designed and synthesized, which represents model systems for radicals produced during polyester degradation. The precursor is equipped with a nitrate functional group, which serves as a masked site for these alkoxyl and carbon radicals that are unleashed through collision-induced dissociation (CID). Oxo+O• and Oxo+C• feature a cyclic carboxonium ion as permanent charge tag to enable monitoring their ion-molecule reactions on the millisecond to second time scale in the ion trap of the mass spectrometer. The reactions of Oxo+O• and Oxo+C• with cyclohexene, cyclohexadiene, ethyl acetate, 1,1-dimethoxyethane, and 1,2-dimethoxyethane, which exhibit structural features present in both intact and defective polyesters, were explored through product and kinetic studies to identify "hot spots" for radical-induced damage in polyesters. All reactions with Oxo+O• were extremely fast and proceeded predominantly through HAT. Oxo+C• was about two orders of magnitude less reactive and did not noticeably damage aliphatic ester moieties through hydrogen abstraction on the time scale of our experiments. Radical addition to alkene π systems was identified as an important pathway for C-radicals, which needs to be included in polymer degradation mechanisms.

13.
Chemistry ; 22(9): 3163-9, 2016 Feb 24.
Artigo em Inglês | MEDLINE | ID: mdl-26813415

RESUMO

The mechanism of the recently described N→C direction peptide synthesis through silver-promoted coupling of N-protected amino acids with thioacetylated amino esters was explored by using density functional theory. Calculation of the potential energy surfaces for various pathways revealed that the reaction proceeds through silver-assisted addition of the carboxylate to the thioamide, which is followed by deprotonation and silver-mediated extrusion of sulfur as Ag2 S. The resulting isoimide is the key intermediate, which subsequently rearranges to an imide through a concerted pericyclic [1,3]-acyl shift (O-sp(2) N 1,3-acyl migration). The proposed mechanism clearly emphasises the requirement of two equivalents of Ag(I) and basic reaction conditions, which is in full agreement with the experimental findings. Alternative rearrangement pathways involving only one equivalent of Ag(I) or through O-sp(3) N 1,3-acyl migration can be excluded. The computations further revealed that peptide couplings involving thioformamides require significant conformational changes in the intermediate isoformimide, which slow down the rearrangement process.


Assuntos
Ácidos Carboxílicos/química , Formamidas/química , Peptídeos/química , Prata/química , Compostos de Sulfidrila/química , Tioamidas/química , Estrutura Molecular , Teoria Quântica
14.
J Org Chem ; 81(4): 1434-49, 2016 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-26816207

RESUMO

Novel tricyclic bridged heterocyclic systems can be readily prepared from sequential 1,4- and 1,2-addition reactions of allyl and 3-substituted allylsilanes to indolizidine and quinolizidine α,ß-unsaturated N-acyliminium ions. These reactions involve a novel N-assisted, transannular 1,5-hydride shift. Such a mechanism was supported by examining the reaction of a dideuterated indolizidine, α,ß-unsaturated N-acyliminium ion precursor, which provided specifically dideuterated tricyclic bridged heterocyclic products, and from computational studies. In contrast, the corresponding pyrrolo[1,2-a]azepine system did not provide the corresponding tricyclic bridged heterocyclic product and gave only a bis-allyl adduct, while more substituted versions gave novel furo[3,2-d]pyrrolo[1,2-a]azepine products. Such heterocyclic systems would be expected to be useful scaffolds for the preparation of libraries of novel compounds for new drug discovery programs.

15.
Chemistry ; 21(42): 14924-30, 2015 Oct 12.
Artigo em Inglês | MEDLINE | ID: mdl-26333002

RESUMO

The fragmentation-rearrangement of peptide backbones mediated by nitrogen dioxide, NO2 (.) , was explored using di-, tri-, and tetrapeptides 8-18 as model systems. The reaction, which is initiated through nonradical N-nitrosation of the peptide bond, shortens the peptide chain by the expulsion of one amino acid moiety with simultaneous fusion of the remaining molecular termini through formation of a new peptide bond. The relative rate of the fragmentation-rearrangement depends on the nature of the amino acids and decreases with increasing steric bulk at the α carbon in the order Gly>Ala>Val. Peptides that possessed consecutive aromatic side chains only gave products that resulted from nitrosation of the sterically less congested N-terminal amide. Such backbone fragmentation-rearrangement occurs under physiologically relevant conditions and could be an important reaction pathway for peptides, in which sections without readily oxidizable side chains are exposed to the air pollutant NO2 (.) . In addition to NO2 (.) -induced radical oxidation processes, this outcome shows that ionic reaction pathways, in particular nitrosation, should be factored in when assessing NO2 (.) reactivity in biological systems.

16.
Chem Res Toxicol ; 28(11): 2224-33, 2015 Nov 16.
Artigo em Inglês | MEDLINE | ID: mdl-26523953

RESUMO

Acetaminophen (paracetamol, APAP) is a safe and widely used analgesic medication when taken at therapeutic doses. However, APAP can cause potentially fatal hepatotoxicity when taken in overdose or in patients with metabolic irregularities. The production of the electrophilic and putatively toxic compound N-acetyl-p-benzoquinone imine (NAPQI), which cannot be efficiently detoxicated at high doses, is implicated in APAP toxicity. Numerous studies have identified that excess NAPQI can form covalent linkages to the thiol side chains of cysteine residues in proteins; however, the reactivity of NAPQI toward other amino acid side chains is largely unexplored. Here, we report a survey of the reactivity of NAPQI toward 11 N-acetyl amino acid methyl esters and four peptides. (1)H NMR analysis reveals that NAPQI forms covalent bonds to the side-chain functional groups of cysteine, methionine, tyrosine, and tryptophan residues. Analogous reaction products were observed when NAPQI was reacted with synthetic model peptides GAIL-X-GAILR for X = Cys, Met, Tyr, and Trp. Tandem mass spectrometry peptide sequencing showed that the NAPQI modification sites are located on the "X" residue in each case. However, when APAP and the GAIL-X-GAILR peptide were incubated with rat liver microsomes that contain many metabolic enzymes, NAPQI formed by oxidative metabolism reacted with GAIL-C-GAILR exclusively. For the peptides where X = Met, Tyr, and Trp, competing reactions between NAPQI and alternative nucleophiles precluded arylation of the target peptide by NAPQI. Although Cys residues are favorably targeted under these conditions, these data suggest that NAPQI can, in principle, also damage proteins at Met, Tyr, and Trp residues.


Assuntos
Aminoácidos/metabolismo , Benzoquinonas/metabolismo , Iminas/metabolismo , Concentração de Íons de Hidrogênio , Microssomos/metabolismo , Peptídeos/metabolismo , Ligação Proteica
17.
J Phys Chem A ; 119(38): 9812-20, 2015 Sep 24.
Artigo em Inglês | MEDLINE | ID: mdl-26335928

RESUMO

It has recently been discovered that carbonyl compounds can undergo UV-induced isomerization to their enol counterparts under atmospheric conditions. This study investigates the photoisomerization of glycolaldehyde (HOCH2CHO) to 1,2-ethenediol (HOCH═CHOH) and the subsequent (•)OH-initiated oxidation chemistry of the latter using quantum chemical calculations and stochastic master equation simulations. The keto-enol tautomerization of glycolaldehyde to 1,2-ethenediol is associated with a barrier of 66 kcal mol(-1) and involves a double-hydrogen shift mechanism to give the lower-energy Z isomer. This barrier lies below the energy of the UV/vis absorption band of glycolaldehyde and is also considerably below the energy of the products resulting from photolytic decomposition. The subsequent atmospheric oxidation of 1,2-ethenediol by (•)OH is initiated by addition of the radical to the π system to give the (•)CH(OH)CH(OH)2 radical, which is subsequently trapped by O2 to form the peroxyl radical (•)O2CH(OH)CH(OH)2. According to kinetic simulations, collisional deactivation of the latter is negligible and cannot compete with rapid fragmentation reactions, which lead to (i) formation of glyoxal hydrate [CH(OH)2CHO] and HO2(•) through an α-hydroxyl mechanism (96%) and (ii) two molecules of formic acid with release of (•)OH through a ß-hydroxyl pathway (4%). Phenomenological rate coefficients for these two reaction channels were obtained for use in atmospheric chemical modeling. At tropospheric (•)OH concentrations, the lifetime of 1,2-ethenediol toward reaction with (•)OH is calculated to be 68 h.


Assuntos
Acetaldeído/análogos & derivados , Etilenos/química , Radical Hidroxila/química , Modelos Teóricos , Fotoquímica , Acetaldeído/química , Cinética , Oxirredução , Teoria Quântica , Estereoisomerismo , Termodinâmica
18.
Environ Sci Technol ; 48(12): 6694-701, 2014 Jun 17.
Artigo em Inglês | MEDLINE | ID: mdl-24844308

RESUMO

Enols are emerging as trace atmospheric components that may play a significant role in the formation of organic acids in the atmosphere. We have investigated the hydroxyl radical ((•)OH) initiated oxidation chemistry of the simplest enol, vinyl alcohol (ethenol, CH2═CHOH), using quantum chemical calculations and energy-grained master equation simulations. A lifetime of around 4 h was determined for vinyl alcohol in the presence of tropospheric levels of (•)OH. The reaction proceeds by (•)OH addition at both the α (66%) and ß (33%) carbons of the π-system, yielding the C-centered radicals (•)CH2CH(OH)2, and HOCH2C(•)HOH, respectively. Subsequent trapping by O2 leads to the respective peroxyl radicals. About 90% of the chemically activated population of the major peroxyl radical adduct (•)O2CH2CH(OH)2 is predicted to undergo fragmentation to produce formic acid and formaldehyde, with regeneration of (•)OH. The minor peroxyl radical HOCH2C(OO(•))HOH is even less stable and undergoes almost exclusive HO2(•) elimination to form glycolaldehyde (HOCH2CHO). Formation of the latter has not been proposed before in the oxidation of vinyl alcohol. A kinetic mechanism for use in atmospheric modeling is provided, featuring phenomenological rate coefficients for formation of the three main product channels ((•)O2CH2CH(OH)2 [8%]; HC(O)OH + HCHO + (•)OH [56%]; HOCH2CHO + HO2(•) [37%]). Our study supports previous findings that vinyl alcohol should be rapidly removed from the atmosphere by reaction with (•)OH and O2 with glycolaldehyde being identified as a previously unconsidered product. Most importantly, it is shown that direct chemically activated reactions can lead to (•)OH and HO2(•) (HOx) recycling.


Assuntos
Álcoois/química , Atmosfera/química , Radical Hidroxila/química , Modelos Teóricos , Oxigênio/química , Simulação por Computador , Isomerismo , Cinética , Conformação Molecular , Oxirredução , Termodinâmica
19.
Phys Chem Chem Phys ; 16(45): 24954-64, 2014 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-25325244

RESUMO

ß-Hydroxyperoxyl radicals are formed during atmospheric oxidation of unsaturated volatile organic compounds such as isoprene. They are intermediates in the combustion of alcohols. In these environments the unimolecular isomerization and decomposition of ß-hydroxyperoxyl radicals may be of importance, either through chemical or thermal activation. We have used ion-trap mass spectrometry to generate the distonic charge-tagged ß-hydroxyalkyl radical anion, ˙CH2C(OH)(CH3)CH2C(O)O(-), and investigated its subsequent reaction with O2 in the gas phase under conditions that are devoid of complicating radical-radical reactions. Quantum chemical calculations and master equation/RRKM theory modeling are used to rationalize the results and discern a reaction mechanism. Reaction is found to proceed via initial hydrogen abstraction from the γ-methylene group and from the ß-hydroxyl group, with both reaction channels eventually forming isobaric product ions due to loss of either ˙OH + HCHO or ˙OH + CO2. Isotope labeling studies confirm that a 1,5-hydrogen shift from the ß-hydroxyl functionality results in a hydroperoxyalkoxyl radical intermediate that can undergo further unimolecular dissociations. Furthermore, this study confirms that the facile decomposition of ß-hydroxyperoxyl radicals can yield ˙OH in the gas phase.


Assuntos
Elétrons , Radical Hidroxila/química , Peróxidos/química , Espectrometria de Massas , Modelos Moleculares , Conformação Molecular , Oxigênio/química , Teoria Quântica
20.
J Phys Chem A ; 118(18): 3295-306, 2014 May 08.
Artigo em Inglês | MEDLINE | ID: mdl-24712711

RESUMO

Product and mechanistic studies were performed for the reaction of aromatic distonic peroxyl radical cations 4-PyrOO(•+) and 3-PyrOO(•+) with phenylacetylene (7) in the gas phase using mass spectrometric and computational techniques. PyrOO(•+) was generated through reaction of the respective distonic aryl radical cation Pyr(•+) with O2 in the ion source of the mass spectrometer. For the reaction involving the more electrophilic 4-PyrOO(•+), a rate coefficient of k1 = (2.2 ± 0.6) × 10(-10) cm(3) molecule(-1) s(-1) was determined at 298 K, while a value of k2 = (8.2 ± 2.1) × 10(-11) cm(3) molecule(-1) s(-1) was obtained for the reaction involving the less electrophilic 3-PyrOO(•+). This highlights the role of polar effects in these reactions, which are likely of high relevance for processes in combustions and atmospheric transformations. The mechanism was studied by computational methods, which showed that radical addition occurs exclusively at the less substituted alkyne site to give the distonic vinyl radical cation 8. The latter undergoes a series of subsequent rearrangements/fragmentations that are similar for both isomeric PyrOO(•+). γ-Fragmentation in 8 leads to the distonic aryloxyl radical cation PyrO(•+) and a singlet carbene 10. The product association complex [PyrO(•+) - 10] is the starting point for two important subsequent reactions, e.g., (i) rapid hydrogen transfer to form ketenyl radical 11 and the closed-shell species PyrOH(+), and (ii) oxygen transfer from PyrO(•+) to 10 that leads to α-keto aldehyde 13 and Pyr(•+), followed by hydrogen abstraction to give acyl radical 14 and PyrH(+). Additional major products are the closed-shell aromatic carbonyl compounds 20 and 30 that result from multistep rearrangements in vinyl radical 8, which are terminated by homolytic bond scission and release of neutral acyl radicals.


Assuntos
Acetileno/análogos & derivados , Peróxidos/química , Acetileno/química , Espectrometria de Massas , Simulação de Dinâmica Molecular , Estrutura Molecular
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