Pesquisa | BVS Violência e Saúde

1.

Transient naive reprogramming corrects hiPS cells functionally and epigenetically.

Buckberry, Sam; Liu, Xiaodong; Poppe, Daniel; Tan, Jia Ping; Sun, Guizhi; Chen, Joseph; Nguyen, Trung Viet; de Mendoza, Alex; Pflueger, Jahnvi; Frazer, Thomas; Vargas-Landín, Dulce B; Paynter, Jacob M; Smits, Nathan; Liu, Ning; Ouyang, John F; Rossello, Fernando J; Chy, Hun S; Rackham, Owen J L; Laslett, Andrew L; Breen, James; Faulkner, Geoffrey J; Nefzger, Christian M; Polo, Jose M; Lister, Ryan.

Nature ; 620(7975): 863-872, 2023 Aug.

Artigo em Inglês | MEDLINE | ID: mdl-37587336

2.

Enteric neurons increase maternal food intake during reproduction.

Hadjieconomou, Dafni; King, George; Gaspar, Pedro; Mineo, Alessandro; Blackie, Laura; Ameku, Tomotsune; Studd, Chris; de Mendoza, Alex; Diao, Fengqiu; White, Benjamin H; Brown, André E X; Plaçais, Pierre-Yves; Préat, Thomas; Miguel-Aliaga, Irene.

Nature ; 587(7834): 455-459, 2020 11.

Artigo em Inglês | MEDLINE | ID: mdl-33116314

3.

DNA methyltransferase DNMT3A forms interaction networks with the CpG site and flanking sequence elements for efficient methylation.

Dukatz, Michael; Dittrich, Marianna; Stahl, Elias; Adam, Sabrina; de Mendoza, Alex; Bashtrykov, Pavel; Jeltsch, Albert.

J Biol Chem ; 298(10): 102462, 2022 10.

Artigo em Inglês | MEDLINE | ID: mdl-36067881

4.

Towards understanding the origin of animal development.

Ruiz-Trillo, Iñaki; de Mendoza, Alex.

Development ; 147(23)2020 12 03.

Artigo em Inglês | MEDLINE | ID: mdl-33272929

5.

Capture of a functionally active methyl-CpG binding domain by an arthropod retrotransposon family.

de Mendoza, Alex; Pflueger, Jahnvi; Lister, Ryan.

Genome Res ; 29(8): 1277-1286, 2019 08.

Artigo em Inglês | MEDLINE | ID: mdl-31239280

6.

Developmental remodelling of non-CG methylation at satellite DNA repeats.

Ross, Samuel E; Angeloni, Allegra; Geng, Fan-Suo; de Mendoza, Alex; Bogdanovic, Ozren.

Nucleic Acids Res ; 48(22): 12675-12688, 2020 12 16.

Artigo em Inglês | MEDLINE | ID: mdl-33271598

7.

Author Correction: Enteric neurons increase maternal food intake during reproduction.

Hadjieconomou, Dafni; King, George; Gaspar, Pedro; Mineo, Alessandro; Blackie, Laura; Ameku, Tomotsune; Studd, Chris; de Mendoza, Alex; Diao, Fengqiu; White, Benjamin H; Brown, André E X; Plaçais, Pierre-Yves; Préat, Thomas; Miguel-Aliaga, Irene.

Nature ; 588(7839): E36, 2020 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-33303962

8.

Sterol and genomic analyses validate the sponge biomarker hypothesis.

Gold, David A; Grabenstatter, Jonathan; de Mendoza, Alex; Riesgo, Ana; Ruiz-Trillo, Iñaki; Summons, Roger E.

Proc Natl Acad Sci U S A ; 113(10): 2684-9, 2016 Mar 08.

Artigo em Inglês | MEDLINE | ID: mdl-26903629

9.

Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages.

de Mendoza, Alex; Sebé-Pedrós, Arnau; Sestak, Martin Sebastijan; Matejcic, Marija; Torruella, Guifré; Domazet-Loso, Tomislav; Ruiz-Trillo, Iñaki.

Proc Natl Acad Sci U S A ; 110(50): E4858-66, 2013 Dec 10.

Artigo em Inglês | MEDLINE | ID: mdl-24277850

10.

Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division.

Desvoyes, Bénédicte; de Mendoza, Alex; Ruiz-Trillo, Iñaki; Gutierrez, Crisanto.

J Exp Bot ; 65(10): 2657-66, 2014 Jun.

Artigo em Inglês | MEDLINE | ID: mdl-24323507

11.

Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons.

Dossmann, Leonie; Emperle, Max; Dukatz, Michael; de Mendoza, Alex; Bashtrykov, Pavel; Jeltsch, Albert.

Commun Biol ; 7(1): 582, 2024 May 16.

Artigo em Inglês | MEDLINE | ID: mdl-38755427

12.

Hagfish genome elucidates vertebrate whole-genome duplication events and their evolutionary consequences.

Yu, Daqi; Ren, Yandong; Uesaka, Masahiro; Beavan, Alan J S; Muffato, Matthieu; Shen, Jieyu; Li, Yongxin; Sato, Iori; Wan, Wenting; Clark, James W; Keating, Joseph N; Carlisle, Emily M; Dearden, Richard P; Giles, Sam; Randle, Emma; Sansom, Robert S; Feuda, Roberto; Fleming, James F; Sugahara, Fumiaki; Cummins, Carla; Patricio, Mateus; Akanni, Wasiu; D'Aniello, Salvatore; Bertolucci, Cristiano; Irie, Naoki; Alev, Cantas; Sheng, Guojun; de Mendoza, Alex; Maeso, Ignacio; Irimia, Manuel; Fromm, Bastian; Peterson, Kevin J; Das, Sabyasachi; Hirano, Masayuki; Rast, Jonathan P; Cooper, Max D; Paps, Jordi; Pisani, Davide; Kuratani, Shigeru; Martin, Fergal J; Wang, Wen; Donoghue, Philip C J; Zhang, Yong E; Pascual-Anaya, Juan.

Nat Ecol Evol ; 8(3): 519-535, 2024 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-38216617

13.

A mammalian DNA methylation landscape.

de Mendoza, Alex.

Science ; 381(6658): 602-603, 2023 08 11.

Artigo em Inglês | MEDLINE | ID: mdl-37561871

14.

The mysterious evolutionary origin for the GNE gene and the root of bilateria.

de Mendoza, Alex; Ruiz-Trillo, Iñaki.

Mol Biol Evol ; 28(11): 2987-91, 2011 Nov.

Artigo em Inglês | MEDLINE | ID: mdl-21616910

15.

Unexpected repertoire of metazoan transcription factors in the unicellular holozoan Capsaspora owczarzaki.

Sebé-Pedrós, Arnau; de Mendoza, Alex; Lang, B Franz; Degnan, Bernard M; Ruiz-Trillo, Iñaki.

Mol Biol Evol ; 28(3): 1241-1254, 2011 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-21087945

16.

Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability.

de Mendoza, Alex; Nguyen, Trung Viet; Ford, Ethan; Poppe, Daniel; Buckberry, Sam; Pflueger, Jahnvi; Grimmer, Matthew R; Stolzenburg, Sabine; Bogdanovic, Ozren; Oshlack, Alicia; Farnham, Peggy J; Blancafort, Pilar; Lister, Ryan.

Genome Biol ; 23(1): 163, 2022 07 26.

Artigo em Inglês | MEDLINE | ID: mdl-35883107

17.

The emergence of the brain non-CpG methylation system in vertebrates.

de Mendoza, Alex; Poppe, Daniel; Buckberry, Sam; Pflueger, Jahnvi; Albertin, Caroline B; Daish, Tasman; Bertrand, Stephanie; de la Calle-Mustienes, Elisa; Gómez-Skarmeta, José Luis; Nery, Joseph R; Ecker, Joseph R; Baer, Boris; Ragsdale, Clifton W; Grützner, Frank; Escriva, Hector; Venkatesh, Byrappa; Bogdanovic, Ozren; Lister, Ryan.

Nat Ecol Evol ; 5(3): 369-378, 2021 03.

Artigo em Inglês | MEDLINE | ID: mdl-33462491

18.

Evolution of the MAGUK protein gene family in premetazoan lineages.

de Mendoza, Alex; Suga, Hiroshi; Ruiz-Trillo, Iñaki.

BMC Evol Biol ; 10: 93, 2010 Apr 01.

Artigo em Inglês | MEDLINE | ID: mdl-20359327

19.

Evolution of DNA Methylome Diversity in Eukaryotes.

de Mendoza, Alex; Lister, Ryan; Bogdanovic, Ozren.

J Mol Biol ; 432(6): 1687-1705, 2020 Mar 13.

Artigo em Inglês | MEDLINE | ID: mdl-31726061

20.

Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri.

Kenny, Nathan J; Francis, Warren R; Rivera-Vicéns, Ramón E; Juravel, Ksenia; de Mendoza, Alex; Díez-Vives, Cristina; Lister, Ryan; Bezares-Calderón, Luis A; Grombacher, Lauren; Roller, Masa; Barlow, Lael D; Camilli, Sara; Ryan, Joseph F; Wörheide, Gert; Hill, April L; Riesgo, Ana; Leys, Sally P.

Nat Commun ; 11(1): 3676, 2020 07 27.

Artigo em Inglês | MEDLINE | ID: mdl-32719321

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