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1.
J Anim Physiol Anim Nutr (Berl) ; 101(5): e67-e76, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-27747957

RESUMO

This study aimed to evaluate the effects of juniper essential oil on the growth performance, rumen fermentation parameters, rumen protozoa population, blood antioxidant enzyme parameters and faecal content in growing Saanen kids. Thirty-six male Saanen kids (36 ± 14 days of age) were used in the study. Each group consisted of 9 kids. The control group (G1) was fed with a diet that consisted of the above concentrated feed and oat hay, whereas the experimental groups consumed the same diet but with the concentrated feed uniformly sprayed with juniper essential oil 0.4 ml/kg (G2), 0.8 ml/kg (G3) or 2 ml/kg (G4). There were no differences (p > 0.05) in live weight, live weight gain or feed consumption between the control and experimental groups. There was a significant improvement (p < 0.05) in feed efficiency in the G3 group. There were no differences in the rumen pH, rumen volatile fatty acid (VFA) profile or faecal pH of the control and experimental groups. The rumen NH3 N values were similar at the middle and end of the experiment, but at the start of the experiment, the rumen NH3 N values differed between the control and experimental groups (p < 0.05). The faecal score value was significantly (p < 0.05) decreased in the experimental groups. The addition of juniper essential oil supplementation to the rations caused significant effects on the kids' antioxidant blood parameters. Although the superoxide dismutase (SOD) activity, total antioxidant capacity (TAC) and catalase values were significantly (p < 0.05) increased in the experimental groups (G2, G3 and G4), especially group G4, the blood glutathione peroxidase (GPX) value significantly decreased in the experimental groups. The results of this study suggest that supplementation of juniper oil is more effective on antioxidant parameters than on performance parameters and may be used as a natural antioxidant product.


Assuntos
Antioxidantes/metabolismo , Cabras/crescimento & desenvolvimento , Juniperus/química , Óleos de Plantas/farmacologia , Rúmen/parasitologia , Amônia/química , Amônia/metabolismo , Ração Animal/análise , Animais , Dieta/veterinária , Suplementos Nutricionais , Fermentação , Concentração de Íons de Hidrogênio , Óleos Voláteis/química , Óleos Voláteis/farmacologia , Óleos de Plantas/química , Rúmen/química , Rúmen/efeitos dos fármacos
2.
J Sci Food Agric ; 96(1): 223-31, 2016 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-25582909

RESUMO

BACKGROUND: Cereal grains are important ingredients of ruminant diets, but their rapid degradation seriously impairs rumen fermentation and the host's health. The goal of this study was to evaluate whether processing of barley grain with 1 or 5% lactic acid (LA) and 1 or 5% tannic acid (TA), without or with an additional heat treatment (1% LAH or 1% TAH), may affect microbial ruminal abundance, fermentation profile, and nutrient degradation in vitro. RESULTS: Processing with LA lowered (P < 0.05) the concentration of short-chain fatty acids (SCFAs), proportions of branched-chain SCFA, and the acetate-to-propionate ratio. Treatment with 1% TAH and 1% LAH lowered (P < 0.05) gene copy numbers of total protozoa, rumen lipopolysaccharide, and degradation of crude protein, and tended (P = 0.08) to lower the proportion of the genus Prevotella. Treatment of barley grain with 1% LA or 1% LAH stimulated Clostridium cluster XIV. Degradation of fibre was enhanced (P < 0.05) by all LA and TA treatments. CONCLUSION: Chemical and heat treatment of barley grain modulated the ruminal fermentation profile and enhanced fibre degradation; however, processing of grain with LA seems to be superior because this effect was not associated with a concomitant depression in ruminal degradation of organic matter.


Assuntos
Fibras na Dieta/metabolismo , Grão Comestível/química , Fermentação , Hordeum , Ácido Láctico , Rúmen , Taninos , Ração Animal , Animais , Clostridium/crescimento & desenvolvimento , Dieta/veterinária , Proteínas Alimentares/metabolismo , Digestão , Ácidos Graxos Voláteis/metabolismo , Manipulação de Alimentos/métodos , Microbioma Gastrointestinal , Temperatura Alta , Técnicas In Vitro , Lipopolissacarídeos , Prevotella/crescimento & desenvolvimento , Rúmen/metabolismo , Rúmen/microbiologia
3.
Trop Anim Health Prod ; 48(6): 1135-40, 2016 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-27107749

RESUMO

Four rumen-fistulated swamp buffaloes (Bubalus bubalis) were randomly allocated to investigate rumen adaptation of urea on feed intake, nutrient digestibility, fermentation efficiency, and microbial protein synthesis. Buffaloes were fed with rice straw ad libitum for a period of 2 weeks and then were shifted to a step-up diet regimen by supplementation of concentrate containing 20 and 40 g/kg urea at 5 g/kg BW for a period of 2 and 4 weeks, respectively. The results revealed that feed intake and nutrient digestibility were increased by urea supplementation (P < 0.05) both at two and four period of consumption. However, ruminal pH, temperature, and protozoal population were neither affected by urea nor adaptation period (P > 0.05) while bacterial and fungal zoospores were increased especially at 40 g/kg urea. Data from real-time PCR further showed that total bacteria and the three predominant cellulolytic bacteria (Ruminococcus albus, Fibrobacter succinogenes, Ruminococcus flavefaciens) were increased by urea supplementation both at 2 and 4 weeks of urea feeding. Furthermore, methane production was similar among treatments while microbial protein synthesis was enhanced when buffaloes were fed with urea after a period of 2 weeks especially at 40 g/kg urea (P < 0.05). It can be concluded that urea supplementation could increase feed intake, nutrient digestibility, microbial protein synthesis, and fermentation efficiency of swamp buffaloes fed on rice straw. It is suggested that buffaloes could adapt well and utilize urea as a N source effectively within a period of 2 weeks uptake without adverse effect.


Assuntos
Ração Animal/análise , Criação de Animais Domésticos , Búfalos/fisiologia , Dieta/veterinária , Oryza , Rúmen/metabolismo , Fenômenos Fisiológicos da Nutrição Animal , Animais , Suplementos Nutricionais , Comportamento Alimentar , Tailândia , Ureia/metabolismo , Áreas Alagadas
4.
Trop Anim Health Prod ; 48(8): 1673-1678, 2016 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-27620869

RESUMO

The objective of this study was to evaluate the effects of banana flower power pellet (BAFLOP-pellet) and plant oil source on in vitro gas production, fermentation efficiency, and methane (CH4) production. Rumen fluid was collected from two rumen-fistulated dairy steers fed on rice straw-based diet with concentrate supplement to maintain normal rumen ecology. All supplemented feed were added to respective treatments in the 30:70 roughage to concentrate-based substrate. The treatments were arranged according to a 3 × 3 factorial arrangement in a completely randomized design. First factor was different levels of BAFLOP-pellet supplementation (0, 30, and 60 g/kg of dietary substrate) and second factor was plant oil source supplementation [non-supplemented, 20 g/kg krabok seed oil (KSO), and 20 g/kg coconut oil (CO) of dietary substrate, respectively]. Under this investigation, BAFLOP-pellet supplementation increased gas production kinetics and in vitro digestibility (P < 0.05). Ruminal pH was dropped post incubation time in the non-supplemented group but was enhanced in BAFLOP-pellet-supplemented treatments. On the other hand, supplementation of KSO and CO depressed gas production and digestibility, but did not influence ruminal pH. In addition, protozoal population and CH4 production were decreased by BAFLOP-pellet and plant oil addition (P < 0.05). Based on this study, it could be concluded that supplementation of BAFLOP-pellet and plant oil source could enhance the in vitro fermentation efficiency while reduced protozoal population and CH4 production. It is suggested that BAFLOP-pellet (60 g/kg of dietary substrate) and KSO/CO (20 g/kg of dietary substrate) could be used to manipulate rumen fermentation characteristics fed on high-concentrate diet.


Assuntos
Ração Animal/análise , Criação de Animais Domésticos , Bovinos/fisiologia , Indústria de Laticínios , Dieta/veterinária , Rúmen/metabolismo , Animais , Suplementos Nutricionais , Digestão/efeitos dos fármacos , Feminino , Fermentação , Flores , Metano/metabolismo , Musa , Óleos de Plantas/administração & dosagem , Óleos de Plantas/farmacologia
5.
J Anim Physiol Anim Nutr (Berl) ; 99(3): 449-56, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-25244259

RESUMO

Four rumen-fistulated beef cattle were randomly assigned to four treatments according to a 4 × 4 Latin square design to study the influence of urea and calcium hydroxide [Ca(OH)2 ] treatment of rice straw to improve the nutritive value of rice straw. Four dietary treatments were as follows: untreated rice straw, 50 g/kg urea-treated rice straw, 20 g/kg urea + 20 g/kg calcium hydroxide-treated rice straw and 30 g/kg urea + 20 g/kg calcium hydroxide-treated rice straw. All animals were kept in individual pens and fed with concentrate at 0.5 g/kg of BW (DM), rice straw was fed ad libitum. The experiment was conducted for four periods, and each period lasted for 21 days. During the first 14 days, DM feed intake measurements were made while during the last 7 days, all cattle were moved to metabolism crates for total faeces and urine collections. The results revealed that 20 g/kg urea + 20 g/kg calcium hydroxide-treated rice straw improved the nutritive value of rice straw, in terms of dry matter intake, digestibility, ruminal volatile fatty acids, population of bacteria and fungi, nitrogen retention and microbial protein synthesis. Based on this study, it could be concluded that using urea plus calcium hydroxide was one alternative method to improve the nutritive value of rice straw, rumen ecology and fermentation and thus a reduction of treatment cost.


Assuntos
Ração Animal/análise , Hidróxido de Cálcio/química , Oryza/química , Caules de Planta/química , Rúmen/efeitos dos fármacos , Ureia/química , Fenômenos Fisiológicos da Nutrição Animal , Animais , Bactérias/classificação , Bactérias/efeitos dos fármacos , Proteínas de Bactérias/biossíntese , Bovinos , Dieta/veterinária , Regulação Bacteriana da Expressão Gênica/efeitos dos fármacos , Masculino , Rúmen/microbiologia
6.
Trop Anim Health Prod ; 47(8): 1473-80, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26205904

RESUMO

This study aimed to investigate the effect of mangosteen (Garcinia mangostana) peel powder (MSP) supplementation on feed intake, nutrient digestibility, ruminal fermentation, and milk production in lactating dairy cows fed a concentrate containing yeast fermented cassava chip protein (YEFECAP). Four crossbred dairy cows (50 % Holstein-Friesian and 50 % Thai native breed) in mid-lactation, 404 ± 50.0 kg of body weight and 90 ± 5 day in milk with daily milk production of 9 ± 2.0 kg/day, were randomly assigned according to a 4 × 4 Latin square design to receive 4 dietary treatments. The treatments were different levels of MSP supplementation at 0, 100, 200, and 300 g/head/day. Rice straw was used as a roughage source and fed ad libitum to all cows, and concentrate containing YEFECAP at 200 g/kg concentrate was offered corresponding to concentrate to milk yield ratio at 1:2. Results revealed that feed intake, apparent nutrient digestibility, ruminal pH and temperature, and total volatile fatty acid were not significantly affected by MSP supplementation (P > 0.05). However, increasing levels of MSP supplementation increased molar proportion of propionate while ammonia-nitrogen, acetate, and acetate to propionate ratio were decreased (P < 0.01). Moreover, milk production and economic return were increased linearly (P < 0.01) with the increasing level of MSP supplementation. The present findings suggested that supplementation of MSP especially at 300 g/head/day with concentrate containing YEFECAP at 200 g/kg could improve rumen fermentation efficiency, milk production and protein content, and economical return of lactating dairy cows fed on rice straw.


Assuntos
Suplementos Nutricionais , Garcinia mangostana , Lactação/efeitos dos fármacos , Preparações de Plantas/farmacologia , Rúmen/efeitos dos fármacos , Animais , Bovinos , Dieta/veterinária , Fibras na Dieta , Digestão/efeitos dos fármacos , Ácidos Graxos Voláteis/análise , Feminino , Fermentação/efeitos dos fármacos , Manihot , Leite/estatística & dados numéricos , Oryza , Proteínas de Vegetais Comestíveis , Distribuição Aleatória , Rúmen/metabolismo , Saccharomyces cerevisiae
7.
J Appl Microbiol ; 116(1): 14-22, 2014 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-24118832

RESUMO

AIMS: To develop and test a fluorescence in situ hybridization (FISH) based technique and to identify and quantify simultaneously those methanogenic populations colonizing Entodinium spp. in the rumen of cows fed different forages. METHODS AND RESULTS: New FISH probes targeting protozoal Entodinium spp. were designed and used together with FISH probes for methanogens in the cow rumen. The composition and relative abundance of methanogenic populations colonizing Entodinium simplex-, E. caudaum- and Entodinium furca-related populations were similar. Methanogens including Methanobrevibacter thaueri, Methanobrevibacter millerae and Methanobrevibacter smithii, and members of Methanomicrobium and Methanosphaera were generally the predominant colonizers of protozoa, regardless of the forage fed to cattle. Individual animals appeared to differ in which ruminal methanogenic populations colonized each of the individual Entodinium spp. CONCLUSIONS: Simultaneous FISH probing is shown here to be a reliable and effective approach to investigate the dynamics of symbiotic relationships between ruminal protozoa and methanogens at a single cell level. Phylogenetically closely related Entodinium spp. were colonized by similar methanogenic populations regardless of the forage fed. SIGNIFICANCE AND IMPACT OF THE STUDY: This is the first report of the methanogenic archaeal populations that specifically colonize Entodinium spp. as identified using simultaneous FISH probing.


Assuntos
Medicago sativa , Rúmen , Animais , Bovinos , Euryarchaeota , Hibridização in Situ Fluorescente , RNA Ribossômico 16S , Rúmen/parasitologia , Triticale
8.
Asian-Australas J Anim Sci ; 25(8): 1124-31, 2012 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-25049671

RESUMO

Four Thai - rumen fistulated male swamp buffaloes (Bubalus bubalis), about four years old with 400±20 kg liveweight, were randomly assigned according to a 4×4 Latin square design to receive dietary treatments. The treatments were: ground corn cob (GCC) replacement for cassava chip (CC) in concentrate at 0% (T1); GCC replacement at 33% (T2); GCC replacement at 67% (T3); and GCC replacement at 100% (T4), respectively. During the experiment, concentrate was offered at 0.5% BW while 5% urea-treated rice straw was given at ad libitum. The result revealed that there was no effect of GCC replacement on DMI among treatments. In addition, digestibilities of DM, OM and CP were not different while aNDF linearly increased with an increasing level of GCC replacement. However, GCC replacement did not affect rumen fermentation such as ruminal pH, NH3-N and VFA concentration; except C3 proportion which was the highest at 33% replacement while the lowest was at 100% replacement. All replacements of GCC resulted in similar protozoal and bacterial populations and microbial protein synthesis (MPS). Purine derivatives (PD) concentration in urine and PD to creatinine (PDC) index were varied with time of urination and among treatments at 0 to 8 and 8 to 16 h post feeding and higher values were shown among the GCC replacement groups. However at 16 to 24 h-post feeding, it was untraceable. In addition, creatinine concentration was similar among all treatments at every sampling time. Based on the above results, GCC can be used as an energy source for swamp buffalo fed with rice straw. Spot sampling of urine can be used for purine derivatives determination.

9.
Vet Sci ; 8(12)2021 Nov 28.
Artigo em Inglês | MEDLINE | ID: mdl-34941821

RESUMO

The effect of dry yeast (DY) (Saccharomyces cerevisiae) supplementation in a high-concentrate diet was evaluated for rumen fermentation, blood parameters, microbial populations, and growth performance in fattening steers. Sixteen crossbred steers (Charolais x American Brahman) at 375 ± 25 kg live weight were divided into four groups that received DY supplementation at 0, 5, 10, and 15 g/hd/d using a completely randomized block design. Basal diets were fed as a total mixed ration (roughage to concentrate ratio of 30:70). Results showed that supplementation with DY improved dry matter (DM) intake and digestibility of organic matter (OM), neutral detergent fiber (NDF), and acid detergent fiber (ADF) (p < 0.05), but DM and crude protein (CP) were similar among treatments (p > 0.05). Ruminal pH (>6.0) of fattening steer remained stable (p > 0.05), and pH was maintained at or above 6.0 with DY. The concentration of propionic acid (C3) increased (p < 0.05) with 10 and 15 g/hd/d DY supplementation, while acetic acid (C2) and butyric acid (C4) decreased. Methane (CH4) production in the rumen decreased as DY increased (p < 0.05). Fibrobacter succinogenes and Ruminococcus flavefaciens populations increased (p < 0.05), whereas protozoal and methanogen populations decreased with DY addition at 10 and 15 g/hd/d, while Ruminococcus albus did not change (p > 0.05) among the treatments. Adding DY at 10 and 15 g/hd/d improved growth performance. Thus, the addition of DY to fattening steers with a high concentrate diet improved feed intake, nutrient digestibility, rumen ecology, and growth performance, while mitigating ruminal methane production.

10.
J Appl Genet ; 61(2): 287-297, 2020 May.
Artigo em Inglês | MEDLINE | ID: mdl-32006353

RESUMO

Rumen, one of the most productive diverse microbial habitats plays a vital role in the breakdown of feed to produce energy for maintenance and milk production in cattle. Culture-based procedures could identify only 10% of microbial species present in the rumen. Kerala, one of the southern states of India, owns only one native cattle breed, the Vechur cattle, which is noted for its short stature, disease resistance and adaptability to hot humid climate. Lower population density and decreased milk production potential of Vechur cattle led to the development of crossbred cattle of Kerala, with higher milk yield. A study was conducted to assess the rumen microbial profile of low productive Vechur cattle and high productive crossbred cattle for a better understanding of the relationship between the host and microbial community. DNA isolated from rumen liquor of five cattle each from both genetic groups maintained on standard ration (forage, concentrate ratio of 50:50) was subjected to whole metagenome sequencing. Bioinformatics and statistical analysis revealed that bacteria followed by archaea and eukaryota dominated in the Vechur cattle as well as the crossbred cattle rumen. Bacterial community was dominated by Bacteroidetes and Firmicutes phyla in both genetic groups with a higher Firmicutes to Bacteroidetes ratio of 0.45 in Vechur cattle. Among archaea, Euryarchaeota was more abundant, which constitute methanogens, contributing 98% of total archaeal reads. Prevalent protozoal genus found in the Vechur cattle rumen was Entodinium and in crossbred cattle rumen was Entamoeba. In Vechur and crossbred cattle rumen, 1086 and 1262 microbial species were observed exclusively and 4731 species were shared between habitats. There was a significant difference in total microbial species abundance between the two genetic groups and Vechur cattle displayed significantly higher microbial diversity compared to crossbred. As per literature, this is presumably the first report of rumen metagenome profile of Vechur cattle, a unique short breed of India.


Assuntos
Variação Genética/genética , Metagenoma/genética , Microbiota/genética , Rúmen/microbiologia , Animais , Archaea/classificação , Archaea/genética , Bactérias/classificação , Bactérias/genética , Bovinos , Classificação , Índia , Metagenômica , RNA Ribossômico 16S/genética
12.
Vet World ; 10(6): 616-622, 2017 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-28717312

RESUMO

AIM: A comparative study was conducted on crossbred cattle and buffaloes to investigate the effect of feeding high and low roughage total mixed ration (TMR) diets on rumen metabolites and enzymatic profiles. MATERIALS AND METHODS: Three rumen-fistulated crossbred cattle and buffalo were randomly assigned as per 3×3 switch over design for 21-days. Three TMR diets consisting of concentrate mixture, wheat straw and green maize fodder in the ratios of (T1) 60:20:20, (T2) 40:30:30, and (T3) 20:40:40, respectively, were fed to the animals ad libitum. Rumen liquor samples were collected at 0, 2, 4, 6, and 8 h post feeding for the estimation of rumen biochemical parameters on 2 consecutive days in each trial. RESULTS: The lactic acid concentration and pH value were comparable in both species and treatments. Feed intake (99.77±2.51 g/kg body weight), ruminal ammonia nitrogen, and total nitrogen were significantly (p<0.05) higher in buffalo and in treatment group fed with high concentrate diet. Production of total volatile fatty acids (VFAs) was non-significant (p>0.05) among treatments and significantly (p<0.05) greater in crossbred cattle than buffaloes. Molar proportions of individual VFAs propionate (C3), propionate:butyrate (C3:C4), and (acetate+butyrate):propionate ([C2+C4]:C3) ratio in both crossbred cattle and buffalo were not affected by high or low roughage diet, but percentage of acetate and butyrate varied significantly (p<0.05) among treatment groups. Activities of microbial enzymes were comparable among species and different treatment groups. A total number of rumen protozoa were significantly (p<0.05) higher in crossbred cattle than buffaloes along with significantly (p<0.05) higher population in animal fed with high concentrate diet (T1). CONCLUSION: Rumen microbial population and fermentation depend on constituents of the treatment diet. However, microbial enzyme activity remains similar among species and different treatments. High concentrate diet increases number of rumen protozoa, and the number is higher in crossbred cattle than buffaloes.

13.
mBio ; 8(4)2017 08 15.
Artigo em Inglês | MEDLINE | ID: mdl-28811339

RESUMO

Ruminants sustain a long-lasting obligatory relationship with their rumen microbiome dating back 50 million years. In this unique host-microbiome relationship, the host's ability to digest its feed is completely dependent on its coevolved microbiome. This extraordinary alliance raises questions regarding the dependent relationship between ruminants' genetics and physiology and the rumen microbiome structure, composition, and metabolism. To elucidate this relationship, we examined the association of host genetics with the phylogenetic and functional composition of the rumen microbiome. We accomplished this by studying a population of 78 Holstein-Friesian dairy cows, using a combination of rumen microbiota data and other phenotypes from each animal with genotypic data from a subset of 47 animals. We identified 22 operational taxonomic units (OTUs) whose abundances were associated with rumen metabolic traits and host physiological traits and which showed measurable heritability. The abundance patterns of these microbes can explain high proportions of variance in rumen metabolism and many of the host physiological attributes such as its energy-harvesting efficiency. Interestingly, these OTUs shared higher phylogenetic similarity between themselves than expected by chance, suggesting occupation of a specific ecological niche within the rumen ecosystem. The findings presented here suggest that ruminant genetics and physiology are correlated with microbiome structure and that host genetics may shape the microbiome landscape by enriching for phylogenetically related taxa that may occupy a unique niche.IMPORTANCE Dairy cows are an essential nutritional source for the world's population; as such, they are extensively farmed throughout our planet and subsequently impact our environment. The microbial communities that reside in the upper digestive tract of these animals in a compartment named the rumen degrade and ferment the plant biomass that the animal ingests. Our recent efforts, as well as those of others, have shown that this microbial community's composition and functionality are tightly linked to the cow's capacity to harvest energy from its feed, as well as to other physiological traits. In this study, we identified microbial groups that are heritable and also linked to the cow's production parameters. This finding could potentially allow us to apply selection programs on specific rumen microbial components that are linked to the animal's physiology and beneficial to production. Hence, it is a steppingstone toward microbiome manipulation for increasing food availability while lowering environmental impacts such as methane emission.


Assuntos
Bactérias/genética , Metabolismo Energético , Microbioma Gastrointestinal/genética , Rúmen/microbiologia , Ração Animal , Animais , Biomassa , Bovinos , Feminino , Metagenoma , Metano/metabolismo , Filogenia , Análise de Sequência de DNA
14.
Syst Appl Microbiol ; 38(1): 67-76, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25467553

RESUMO

The rumen compartment of the ruminant digestive tract is an enlarged fermentation chamber which houses a diverse collection of symbiotic microorganisms that provide the host animal with a remarkable ability to digest plant lignocellulosic materials. Characterization of the ruminal microbial community provides opportunities to improve animal food digestion efficiency, mitigate methane emission, and develop efficient fermentation systems to convert plant biomasses into biofuels. In this study, 16S rRNA gene amplicon pyrosequencing was applied in order to explore the structure of the bacterial community inhabiting the camel rumen. Using 76,333 quality-checked, chimera- and singleton-filtered reads, 4954 operational taxonomic units (OTUs) were identified at a 97% species level sequence identity. At the phylum level, more than 96% of the reads were affiliated to OTUs belonging to Bacteroidetes (51%), Firmicutes (31%), Proteobacteria (4.8%), Spirochaetes (3.5%), Fibrobacteres (3.1%), Verrucomicrobia (2.7%), and Tenericutes (0.95%). A total of 15% of the OTUs (746) that contained representative sequences from all major taxa were shared by all animals and they were considered as candidate members of the core camel rumen microbiome. Analysis of microbial composition through the solid and liquid fractions of rumen digesta revealed differential enrichment of members of Fibrobacter, Clostridium, Ruminococcus, and Treponema in the solid fraction, as well as members of Prevotella, Verrucomicrobia, Cyanobacteria, and Succinivibrio in the liquid fraction. The results clearly showed that the camel rumen microbiome was structurally similar but compositionally distinct from that of other ruminants, such as the cow. The unique characteristic of the camel rumen microbiome that differentiated it from those of other ruminants was the significant enrichment for cellulolytic bacteria.


Assuntos
Camelus/microbiologia , Microbioma Gastrointestinal/genética , Rúmen/microbiologia , Animais , Bacteroidetes/genética , Feminino , Firmicutes/genética , Metagenoma , Tipagem Molecular , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
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