Indigenous plants promote insect biodiversity in urban greenspaces.

The contribution of urban greenspaces to support biodiversity and provide benefits for people is increasingly recognized. However, ongoing management practices favor vegetation oversimplification, often limiting greenspaces to lawns and tree canopy rather than multi-layered vegetation that includes under- and midstorey, and the use of nonnative species. These practices hinder the potential of greenspaces to sustain indigenous biodiversity, particularly for taxa like insects that rely on plants for food and habitat. Yet, little is known about which plant species may maximize positive outcomes for taxonomically and functionally diverse insect communities in greenspaces. Additionally, while cities are expected to experience high rates of introductions, quantitative assessments of the relative occupancy of indigenous vs. introduced insect species in greenspace are rare, hindering understanding of how management may promote indigenous biodiversity while limiting the establishment of introduced insects. Using a hierarchically replicated study design across 15 public parks, we recorded occurrence data from 552 insect species on 133 plant species, differing in planting design element (lawn, midstorey, and tree canopy), midstorey growth form (forbs, lilioids, graminoids, and shrubs) and origin (nonnative, native, and indigenous), to assess (1) the relative contributions of indigenous and introduced insect species and (2) which plant species sustained the highest number of indigenous insects. We found that the insect community was overwhelmingly composed of indigenous rather than introduced species. Our findings further highlight the core role of multi-layered vegetation in sustaining high insect biodiversity in urban areas, with indigenous midstorey and canopy representing key elements to maintain rich and functionally diverse indigenous insect communities. Intriguingly, graminoids supported the highest indigenous insect richness across all studied growth forms by plant origin groups. Our work highlights the opportunity presented by indigenous understory and midstorey plants, particularly indigenous graminoids, in our study area to promote indigenous insect biodiversity in urban greenspaces. Our study provides a blueprint and stimulus for architects, engineers, developers, designers, and planners to incorporate into their practice plant species palettes that foster a larger presence of indigenous over regionally native or nonnative plant species, while incorporating a broader mixture of midstorey growth forms.

Adaptive Evolution as a Predictor of Species-Specific Innate Immune Response.

It has been proposed that positive selection may be associated with protein functional change. For example, human and macaque have different outcomes to HIV infection and it has been shown that residues under positive selection in the macaque TRIM5α receptor locate to the region known to influence species-specific response to HIV. In general, however, the relationship between sequence and function has proven difficult to fully elucidate, and it is the role of large-scale studies to help bridge this gap in our understanding by revealing major patterns in the data that correlate genotype with function or phenotype. In this study, we investigate the level of species-specific positive selection in innate immune genes from human and mouse. In total, we analyzed 456 innate immune genes using codon-based models of evolution, comparing human, mouse, and 19 other vertebrate species to identify putative species-specific positive selection. Then we used population genomic data from the recently completed Neanderthal genome project, the 1000 human genomes project, and the 17 laboratory mouse genomes project to determine whether the residues that were putatively positively selected are fixed or variable in these populations. We find evidence of species-specific positive selection on both the human and the mouse branches and we show that the classes of genes under positive selection cluster by function and by interaction. Data from this study provide us with targets to test the relationship between positive selection and protein function and ultimately to test the relationship between positive selection and discordant phenotypes.

Plant species phenology differs between climate and land-use scenarios and relates to plant functional traits.

Phenological shifts due to changing climate are often highly species and context specific. Land-use practices such as mowing or grazing directly affect the phenology of grassland species, but it is unclear if plants are similarly affected by climate change in differently managed grassland systems such as meadows and pastures. Functional traits have a high potential to explain phenological shifts and might help to understand species-specific and land-use-specific phenological responses to changes in climate. In the large-scale field experiment Global Change Experimental Facility (GCEF), we monitored the first flowering day, last flowering day, flowering duration, and day of peak flowering, of 17 herbaceous grassland species under ambient and future climate conditions, comparing meadows and pastures. Both climate and land use impacted the flowering phenology of plant species in species-specific ways. We did not find evidence for interacting effects of climate and land-use type on plant phenology. However, the data indicate that microclimatic and microsite conditions on meadows and pastures were differently affected by future climate, making differential effects on meadows and pastures likely. Functional traits, including the phenological niche and grassland utilization indicator values, explained species-specific phenological climate responses. Late flowering species and species with a low mowing tolerance advanced their flowering more strongly under future climate. Long flowering species and species following an acquisitive strategy (high specific leaf area, high mowing tolerance, and high forage value) advanced their flowering end more strongly and thus more strongly shortened their flowering under future climate. We associated these trait-response relationships primarily with a phenological drought escape during summer. Our results provide novel insights on how climate and land use impact the flowering phenology of grassland species and we highlight the role of functional traits in mediating phenological responses to climate.

Physiological mechanisms of exogenous organic acids to alleviate aluminum toxicity in seedlings of mungbean, buckwheat, and rice.

One of the major constraints for crop yield in acidic soils is the phytotoxicity of aluminum ions (Al3+), which primarily affects the roots. To mitigate the harmful effects of Al toxicity, plants use organic acids to chelate Al internally and externally. In this study, the effects of exogenous organic acids on Al toxicity in rice, mung bean, and buckwheat were investigated. Specifically, the study examined the ameliorative effect of three organic acids (oxalic acid, malic acid, and citric acid, each at a concentration of (100 µmol/L) on root elongation, fresh weight, Al content, organic acid key enzymes, and rhizosphere pH in hydroponic media containing (100 µmol/L) Al. The experimental results revealed species-specific responses to aluminum tolerance and the alleviating effects of different organic acids. Buckwheat was found to be the most aluminum-tolerant, followed by mung bean, while rice was the least tolerant. Exogenous application of oxalic acid promoted root elongation, increased root fresh weight, and enhanced the activity of the PEPC enzyme in mung bean. Malic acid, on the other hand, alleviated Al toxicity in rice by promoting root elongation, increasing root fresh weight, enhancing the activity of the PEPC enzyme, and decreasing the activity of the MDH enzyme. In buckwheat, citric acid application reduced Al toxicity by promoting root elongation, increasing root weight, and decreasing the activities of CS and GO enzymes. These findings indicate that different organic acids can reduce Al toxicity in different plant species by employing different physiological mechanisms.

Stress gradients and biodiversity: monoculture vulnerability drives stronger biodiversity effects during drought years.

Climate change will increase the likelihood and severity of droughts into the future. Although diversity may buffer plant communities against the negative effects of drought, the mechanisms underlying this pattern remain unclear. Higher-diversity plant communities may have a higher likelihood of including more drought-resistant species that can compensate for drought-sensitive species ("insurance effects"). Alternatively, higher-diversity communities may alter environmental conditions and improve performance of even drought-sensitive species. Here we planted nonleguminous forbs and grasses into monocultures and four- and eight-species mixtures, and measured species and plot productivity every year from 2000 to 2010. We found that six of our eight species were suppressed when growing in monoculture during dry years. These same species were unaffected by drought when growing in higher-diversity mixtures. Because of this poor performance in monoculture (not insurance effects), the biodiversity productivity relationship was strongest during the driest years. If biodiversity ameliorates hot/dry conditions and therefore improves performance of drought-sensitive species during periods of low rainfall, this may mean biodiversity can be used as a tool to protect individual species from drought conditions.

Response of life-history traits of estuarine nematodes to the surfactant sodium dodecyl sulfate.

Species responses to stress are expected to be dependent on their life-history strategy. In this study, we compare the responses of two free-living marine nematodes, Litoditis marina and Diplolaimella dievengatensis, both considered opportunistic, fast-growing, and stress-tolerant species, to the exposure to sublethal concentrations of sodium dodecyl sulfate (SDS) surfactant. Specifically, we evaluated the growth and reproduction rates, as well as the survival of individuals exposed from eggs and/or juveniles (J1) onwards. Exposure to SDS significantly affected the growth and reproduction rates of both species. However, whereas growth and reproduction rates of D. dievengatensis were significantly enhanced at low and intermediate concentrations of SDS (0.001% and 0.003%), for L. marina both parameters were significantly reduced by all SDS concentrations tested (0.001%, 0.003% and 0.006%). Exposure to SDS did not affect the survival of adult nematodes of D. dievengatensis, while for L. marina, survival of males exposed to 0.006% SDS was significantly reduced compared to the control. Responses of the life-history traits growth, fecundity and survival did not exhibit clear trade-offs. The contrasting responses of D. dievengatensis and L. marina indicate that biologically and ecologically similar species can have remarkably distinct tolerances to stress, and that, in agreement with recent studies, rhabditid nematodes cannot a priori be considered very stress tolerant. Consequently, single species traits and phylogenetic relatedness are poor predictors of nematode responses to toxic stress posed by anthropogenic activities.

Biomonitoring of perylene in symbiotic reef and non-reef building corals and species-specific responses in the Kharg and Larak coral reefs (Persian Gulf, Iran): Bioaccumulation and source identification.

In this study, coral soft tissue, skeleton and zooxanthellae, as well as their ambient sediment and seawater were analyzed for polycyclic aromatic hydrocarbons (PAHs) with a special focus on perylene. Samples were collected from two different environments: the Kharg Island, which is affected by numerous anthropogenic stressors and Larak Island, which is mainly used for recreational and fishing activities and is characterized by dense vegetation. The heaviest loadings of PAHs were observed on Kharg Island, yet higher concentrations of perylene were detected on Larak Island and it was identified as the prevailing compound in this area. Pyrogenic perylene sources were prevailing on Kharg Island, whereas the perylene on Larak Island was determined to be of natural origin. After analyzing the biological samples, higher perylene concentrations were observed in zooxanthellae than in tissue and skeleton. The lowest and the highest perylene loadings were found in the tissue and skeleton of Platygyra daedalea and Porites lutea, respectively. This applies to both reefs. We found that perylene distribution in the corals and their ambient environment follows an irregular pattern, demonstrating remarkable effects from the local inputs. The lipid content in the coral tissue and the location of the coral colony were deduced to be the main factors affecting perylene distribution in corals. On Larak Island, a significant correlation between perylene loadings in sediment and corals was observed. On Kharg Island, a strong interaction between the water column and the corals was detected. The symbiotic relationship between the corals and zooxanthellae might play the most significant role in bioconcentration and bioaccumulation of perylene. Due to the insolubility of PAHs, they could be transferred through a food chain to zooxanthellae and eventually deposited in the coral bodies.