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1.
Circ Res ; 107(9): 1094-101, 2010 Oct 29.
Artigo em Inglês | MEDLINE | ID: mdl-20814020

RESUMO

RATIONALE: Proteasomal degradation is altered in many disease phenotypes including cardiac hypertrophy, a prevalent condition leading to heart failure. Our recent investigations identified heterogeneous subpopulations of proteasome complexes in the heart and implicated multiple mechanisms for their regulation. OBJECTIVE: The study aimed at identification of molecular mechanisms changing proteasome function in the hypertrophic heart. METHOD AND RESULTS: Proteasome function, expression, and assembly were analyzed during the development of cardiac hypertrophy induced by ß-adrenergic stimulation. The analysis revealed, for the first time, divergent regulation of proteasome function in cardiac hypertrophy. Proteasome complexes have 3 different proteolytic activities, which are ATP-dependent for 26S complexes (19S assembled with 20S) and ATP-independent for 20S core particles. The 26S activities were enhanced in hypertrophic hearts, partially because of increased expression and assembly of 19S subunits with 20S core complexes. In contrast, caspase- and trypsin-like 20S activities were significantly decreased. Activation of endogenous cAMP-dependent protein kinase (PKA) rescued the depressed 20S functions, supporting the notion that PKA signaling is a positive regulator of protein degradation in the heart. Chymotrypsin-like 20S activity was stably maintained during cardiac remodeling, indicating a switch in proteasome subpopulations, which was supported by altered expression and incorporation of inducible ß subunits. CONCLUSIONS: Three novel mechanisms for the regulation of proteasome activities were discovered in the development of cardiac hypertrophy: (1) increased incorporation of inducible subunits in 20S proteasomes; (2) enhanced 20S sensitivity to PKA activation; and (3) increased 26S assembly. PKA modulation of proteasome complexes may provide a novel therapeutic avenue for restoration of cardiac function in the diseased myocardium.


Assuntos
Cardiomegalia/induzido quimicamente , Cardiomegalia/enzimologia , Isoproterenol/toxicidade , Complexo de Endopeptidases do Proteassoma/fisiologia , Animais , Cardiomegalia/patologia , Proteínas Quinases Dependentes de AMP Cíclico/metabolismo , Hidrólise , Masculino , Camundongos , Camundongos Endogâmicos ICR , Complexo de Endopeptidases do Proteassoma/biossíntese , Complexo de Endopeptidases do Proteassoma/genética , Complexo de Endopeptidases do Proteassoma/metabolismo , Desnaturação Proteica/efeitos dos fármacos , Desnaturação Proteica/genética , Processamento de Proteína Pós-Traducional/genética , Transdução de Sinais/efeitos dos fármacos , Transdução de Sinais/genética
2.
Biochim Biophys Acta ; 1804(6): 1294-300, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20152942

RESUMO

Environmental variables such as pH can significantly influence the folding and stability of a protein molecule. In the present investigation, we compared the alkaline pH-induced unfolding of two homologous serine hydroxymethyltransferase from mesophilic Bacillus subtilis (bsSHMT) and thermophilic Bacillus stearothermophilus (bstSHMT) using various biophysical techniques. The thermophilic enzyme bstSHMT was found to be more resistant to alkaline denaturation compared to its mesophilic counterpart, bsSHMT. Unfolding studies using domain-swapped chimera, constructed by swapping the C-terminal domain of these two wild-type proteins, revealed that C-terminal domain plays a pivotal role in the folding, stability and subunit interaction of these proteins. Primary amino acid sequence analysis of the proteins showed that bsSHMT has six unconserved lysine residues in C-terminal domain, which are absent in bstSHMT. Chemical modification of lysine side chains resulted in stabilization of monomers, only in case of bsSHMT. Moreover, comparison between homology model of bsSHMT with the crystal structure of bstSHMT revealed that a small stretch of 11 amino acids at the end of C-terminal domain was found protruding outside the molecule as a flexible coiled structure in bsSHMT. Taken together these findings suggest that possibly the presence of these non-identical lysine moieties and a small extension of C-terminal domain may be responsible for low stability of bsSHMT under alkaline pH condition.


Assuntos
Bacillus subtilis/enzimologia , Proteínas de Bactérias/química , Geobacillus stearothermophilus/enzimologia , Glicina Hidroximetiltransferase/química , Dobramento de Proteína , Multimerização Proteica , Bacillus subtilis/genética , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Estabilidade Enzimática/fisiologia , Geobacillus stearothermophilus/genética , Glicina Hidroximetiltransferase/genética , Glicina Hidroximetiltransferase/metabolismo , Concentração de Íons de Hidrogênio , Desnaturação Proteica/genética , Desnaturação Proteica/imunologia , Estrutura Terciária de Proteína , Proteínas Recombinantes de Fusão/química , Proteínas Recombinantes de Fusão/genética , Proteínas Recombinantes de Fusão/metabolismo , Especificidade da Espécie
3.
Proc Natl Acad Sci U S A ; 105(34): 12242-7, 2008 Aug 26.
Artigo em Inglês | MEDLINE | ID: mdl-18708527

RESUMO

An accurate force field is essential to computational protein design and protein fold prediction studies. Proper force field tuning is problematic, however, due in part to the incomplete modeling of the unfolded state. Here, we evaluate and optimize a protein design force field by constraining the amino acid composition of the designed sequences to that of a well behaved model protein. According to the random energy model, unfolded state energies are dependent only on amino acid composition and not the specific arrangement of amino acids. Therefore, energy discrepancies between computational predictions and experimental results, for sequences of identical composition, can be directly attributed to flaws in the force field's ability to properly account for folded state sequence energies. This aspect of fixed composition design allows for force field optimization by focusing solely on the interactions in the folded state. Several rounds of fixed composition optimization of the 56-residue beta1 domain of protein G yielded force field parameters with significantly greater predictive power: Optimized sequences exhibited higher wild-type sequence identity in critical regions of the structure, and the wild-type sequence showed an improved Z-score. Experimental studies revealed a designed 24-fold mutant to be stably folded with a melting temperature similar to that of the wild-type protein. Sequence designs using engrailed homeodomain as a scaffold produced similar results, suggesting the tuned force field parameters were not specific to protein G.


Assuntos
Modelos Moleculares , Dobramento de Proteína , Proteínas/química , Sequência de Aminoácidos , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Proteínas Mutantes/química , Desnaturação Proteica/genética , Temperatura
4.
Biochemistry ; 49(6): 1310-8, 2010 Feb 16.
Artigo em Inglês | MEDLINE | ID: mdl-20073511

RESUMO

Using osmolyte cosolvents, we show that hydrogen-bonding contributions can be separated from hydrophobic interactions in the denatured state ensemble (DSE). Specifically, the effects of urea and the protecting osmolytes sarcosine and TMAO are reported on the thermally unfolded DSE of Nank4-7*, a truncated notch ankyrin protein. The high thermal energy of this state in the presence and absence of 6 M urea or 1 M sarcosine solution is sufficient to allow large changes in the hydrodynamic radius (R(h)) and secondary structure accretion without populating the native state. The CD change at 228 nm is proportional to the inverse of the volume of the DSE, giving a compact species equivalent to a premolten globule in 1 M sarcosine. The same general effects portraying hierarchical folding observed in the DSE at 55 degrees C are also often seen at room temperature. Analysis of Nank4-7* DSE structural energetics at room temperature as a function of solvent provides rationale for understanding the structural and dimensional effects in terms of how modulation of the solvent alters solvent quality for the peptide backbone. Results show that while the strength of hydrophobic interactions changes little on transferring the DSE from 6 M urea to water and then to 1 M TMAO, backbone-backbone (hydrogen-bonding) interactions are greatly enhanced due to progressively poorer solvent quality for the peptide backbone. Thus, increased intrachain hydrogen bonding guides secondary structure accretion and DSE contraction as solvent quality is decreased. This process is accompanied by increasing hydrophobic contacts as chain contraction gathers hydrophobes into proximity and the declining urea-backbone free energy gradient reaches urea concentrations that are energetically insufficient to keep hydrophobes apart in the DSE.


Assuntos
Proteínas de Drosophila/química , Osmose , Receptores Notch/química , Ureia/química , Água/química , Animais , Repetição de Anquirina/genética , Proteínas de Drosophila/genética , Proteínas de Drosophila/metabolismo , Deleção de Genes , Ligação de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Metilaminas/química , Fragmentos de Peptídeos/química , Fragmentos de Peptídeos/genética , Fragmentos de Peptídeos/metabolismo , Desnaturação Proteica/genética , Estabilidade Proteica , Estrutura Terciária de Proteína/genética , Transporte Proteico/genética , Receptores Notch/genética , Receptores Notch/metabolismo , Sarcosina/química , Termodinâmica , Água/metabolismo
5.
Biochem Biophys Res Commun ; 395(3): 348-51, 2010 May 07.
Artigo em Inglês | MEDLINE | ID: mdl-20381458

RESUMO

Arginase is a binuclear Mn(2+)-metalloenzyme of urea cycle that hydrolyses arginine to ornithine and urea. Unlike other arginases, the Helicobacter pylori enzyme is selective for Co(2+). Previous study reported that DTT strongly inhibits the H. pylori enzyme activity suggesting that a disulphide bond is critical for the catalysis. In this study, we have undertaken steady-state kinetics, circular dichroism and mutational analysis to examine the role of a disulphide bond in this protein. By mutational analysis, we show that the disulphide bond is not important for catalytic activity; rather it plays an important role for the stability of the protein as observed from thermal denaturation studies. The loss of catalytic activity in the wild-type protein with DTT is due to the interaction with Co(2+). This is verified with the Mn(2+)-reconstituted proteins which showed a marginal loss in the activity with DTT.


Assuntos
Arginase/química , Cisteína/química , Helicobacter pylori/enzimologia , Arginase/genética , Arginase/metabolismo , Catálise , Cobalto/metabolismo , Cisteína/genética , Análise Mutacional de DNA , Ditiotreitol/química , Estabilidade Enzimática , Manganês/metabolismo , Mutação , Desnaturação Proteica/genética
6.
Biochemistry ; 48(15): 3468-76, 2009 Apr 21.
Artigo em Inglês | MEDLINE | ID: mdl-19222162

RESUMO

The B domain of protein A (BDPA), a three-helix bundle of 60 residues, folds via a nucleation-condensation mechanism in apparent two-state kinetics. We have applied a time-resolved FRET (tr-FRET) approach to characterize the ensembles of BDPA during chemical denaturation. The distribution of the distance between residues 22 and 55, which are close and separated by helices 2 and 3 in the native state, was determined by global analysis of the time-resolved fluorescence decay curves of the probes. Narrow distributions were observed when the protein was equilibrated in guanidinium chloride (GdmCl) concentrations below 1.5 M (native state, N) and above the transition zone at 2.6-3.0 M GdmCl (denatured state, D). Considerably broader distributions were found around the transition point (2.0 M GdmCl) or much higher GdmCl concentrations (>3.0 M). Comparative global analysis of the tr-FRET data showed a compact denatured state of the protein, characterized by narrow distribution and relatively small mean distance between residues 22 and 55 that was observed at mild denaturing conditions (<3 M GdmCl). This experiment supports the two-state folding mechanism of BDPA and indicates the existence of effective nonlocal, probably hydrophobic, intramolecular interactions that stabilize a pretty uniform ensemble of compact denatured molecules at intermediate denaturing conditions.


Assuntos
Transferência Ressonante de Energia de Fluorescência , Proteína Estafilocócica A/química , Proteína Estafilocócica A/metabolismo , Transferência Ressonante de Energia de Fluorescência/métodos , Guanidina/química , Interações Hidrofóbicas e Hidrofílicas , Desnaturação Proteica/genética , Dobramento de Proteína , Estrutura Terciária de Proteína/genética , Proteína Estafilocócica A/genética , Fatores de Tempo
7.
Biochemistry ; 48(49): 11825-30, 2009 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-19877713

RESUMO

Analysis of curved chevron plots is a powerful tool in investigating protein folding pathways, as the curvatures can be used to gain information about both early and late folding events. When and if accumulation of low-energy intermediates can be ruled out, two different models have classically been applied to describe curved chevron plots, namely , (i) Hammond effects along smooth barrier profiles and (ii) changes in the rate-limiting step between two discrete transition states. The two models lead to very similar numerical solutions, which are generally indistinguishable. This is not surprising, since the smooth barrier assumption approximates barrier profiles with a more complex topology involving multiple local maxima that are too close, or too broad, to yield clear-cut kinks in the chevron data. In this work, we have reconstructed the transition state shifts as a function of protein stability over a wide stability range for three small globular proteins, to screen for fingerprints more sensitive for different barrier profiles. We show that such an analysis represents a valuable test for the discrimination between the two different scenarios.


Assuntos
Metabolismo Energético/fisiologia , Domínios PDZ/fisiologia , Dobramento de Proteína , Transdução de Sinais/fisiologia , Proteína 4 Homóloga a Disks-Large , Metabolismo Energético/genética , Humanos , Peptídeos e Proteínas de Sinalização Intracelular/química , Peptídeos e Proteínas de Sinalização Intracelular/metabolismo , Peptídeos e Proteínas de Sinalização Intracelular/fisiologia , Cinética , Proteínas de Membrana/química , Proteínas de Membrana/metabolismo , Proteínas de Membrana/fisiologia , Mutagênese Sítio-Dirigida , Domínios PDZ/genética , Fosfoproteínas/química , Fosfoproteínas/metabolismo , Fosfoproteínas/fisiologia , Desnaturação Proteica/genética , Transdução de Sinais/genética , Proteína da Zônula de Oclusão-1
8.
Biochemistry ; 48(10): 2226-36, 2009 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-19231887

RESUMO

Although aspartate residue D263 of Rhodospirillum rubrum Rubisco is close to the active site and invariant in all reported Rubiscos, its possible functional and structural roles in Rubisco activity have not been investigated. We have mutagenised D263 to several selected amino acids (asparagine, alanine, serine, glutamate, and glutamine) to probe possible roles in facilitating proton movements within the active site and maintaining structural positioning of key active-site groups. The mutants have been characterized by kinetic methods and by differential scanning calorimetry (DSC) to examine the effects of the substitutions on the stability of the folded state. We show that D263 is essential for maintaining effective levels of catalysis with the mutations reducing carboxylation variously by up to 100-fold but having less than 10% effect on the carboxylase/oxygenase specificity of the catalytic reaction. Removing the charge of the residue 263 side chain significantly strengthens binding of the activating (carbamylating) CO(2) molecule. In contrast, a charge on the 263 site has only a small influence on binding of the positively charged Mg(2+) ion, suggesting that the local protein structure provides different shielding of the formal charges on the Mg(2+) ion and the epsilon-lysine group of K191. Interestingly, introduction of an internal cavity (D263S and D263A) and insertion of an extra -CH(2)- group (D263E and D263Q) have opposite effects on catalysis, the former relatively small and the latter much larger, suggesting that the extra side-chain group induces a specific structural distortion that inhibits formation of the transition state. As the DSC results show that the mutations only slightly increase the kinetic stability of the folded state, we conclude that the rate-limiting (activated) step of unfolding involves substantial unfolding of the structure but not in the region of site 263. In summary, interaction of D263 with H287 of a largely electrostatic nature appears critical for maintaining correct positioning of catalytic groups in the active site. The conservation of D263 can thus be accounted for by its contribution to the maintenance of a finely tuned structure in this region abutting the active site.


Assuntos
Ácido Aspártico/metabolismo , Rhodospirillum rubrum/enzimologia , Ribulose-Bifosfato Carboxilase/química , Ribulose-Bifosfato Carboxilase/metabolismo , Substituição de Aminoácidos/fisiologia , Ácido Aspártico/genética , Biocatálise , Varredura Diferencial de Calorimetria , Dióxido de Carbono/química , Dióxido de Carbono/metabolismo , Domínio Catalítico/genética , Estabilidade Enzimática/genética , Temperatura Alta , Cinética , Magnésio/química , Magnésio/metabolismo , Ligação Proteica/genética , Desnaturação Proteica/genética , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Rhodospirillum rubrum/genética , Ribulose-Bifosfato Carboxilase/genética , Ribulosefosfatos/química , Ribulosefosfatos/metabolismo , Especificidade por Substrato/genética , Termodinâmica
9.
Biochemistry ; 48(22): 4926-36, 2009 Jun 09.
Artigo em Inglês | MEDLINE | ID: mdl-19382746

RESUMO

Periplasmic Skp facilitates folding and membrane insertion of many outer membrane proteins (OMPs) into the outer membrane of Gram-negative bacteria. We have examined the binding sites of outer membrane protein A (OmpA) from Escherichia coli in its complexes with the membrane protein chaperone Skp and with Skp and lipopolysaccharide (LPS) by site-directed fluorescence spectroscopy. Single-Trp OmpA mutants, W(n)-OmpA, with tryptophan at position n in the polypeptide chain were isolated in the unfolded form in 8 M urea. In five beta(x)W(n)-OmpA mutants, the tryptophan was located in beta-strand x, in four l(y)W(n)-OmpA mutants, in outer loop y, and in three t(z)W(n)-OmpA mutants in turn z of the beta-barrel transmembrane domain (TMD) of OmpA. PDW(286)-OmpA contained tryptophan in the periplasmic domain (PD). After dilution of the denaturant urea in aqueous solution, spectra indicated a more hydrophobic environment of the tryptophans in beta(x)W(n) mutants in comparison to l(y)W(n)-OmpA and t(z)W(n)-OmpA, indicating that the loops and turns form the surface of hydrophobically collapsed OmpA, while the strand regions are less exposed to water. Addition of Skp increased the fluorescence of all OmpA mutants except PDW(286)-OmpA, demonstrating binding of Skp to the entire beta-barrel domain but not to the PD of OmpA. Skp bound the TMD of OmpA asymmetrically, displaying much stronger interactions with strands beta(1) to beta(3) in the N-terminus than with strands beta(5) to beta(7) in the C-terminus. This asymmetry was not observed for the outer loops and the periplasmic turns of the TMD of OmpA. The fluorescence results demonstrated that all turns and loops l(1), l(2), and l(4) were as strongly bound to Skp as the N-terminal beta-strands. Addition of five negatively charged LPS per one preformed Skp.W(n)-OmpA complex released the C-terminal loops l(2), l(3), and l(4) of the TMD of OmpA from the complex, while its periplasmic turn regions remained bound to Skp. Our results demonstrate that interactions of Skp.OmpA complexes with LPS change the conformation of OmpA in the Skp complex for facilitated insertion and folding into membranes.


Assuntos
Proteínas da Membrana Bacteriana Externa/química , Proteínas da Membrana Bacteriana Externa/genética , Proteínas de Ligação a DNA/química , Proteínas de Ligação a DNA/genética , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/genética , Chaperonas Moleculares/química , Chaperonas Moleculares/genética , Complexos Multiproteicos/química , Proteínas Periplásmicas de Ligação/química , Proteínas Periplásmicas de Ligação/genética , Sequência de Aminoácidos , Substituição de Aminoácidos/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Cisteína/genética , Proteínas de Ligação a DNA/metabolismo , Proteínas de Escherichia coli/metabolismo , Lipopolissacarídeos/química , Lipopolissacarídeos/genética , Lipopolissacarídeos/metabolismo , Chaperonas Moleculares/metabolismo , Dados de Sequência Molecular , Complexos Multiproteicos/genética , Complexos Multiproteicos/metabolismo , Mutagênese Sítio-Dirigida/métodos , Proteínas Periplásmicas de Ligação/metabolismo , Ligação Proteica , Conformação Proteica , Desnaturação Proteica/genética , Dobramento de Proteína , Estrutura Terciária de Proteína/genética , Espectrometria de Fluorescência/métodos , Triptofano/genética , Triptofano/metabolismo
10.
Biochim Biophys Acta ; 1784(11): 1771-6, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18555809

RESUMO

Using several tens of rationally-selected substitutions, insertions and deletions of predominantly non-contiguous residues, we have remodeled the solvent-exposed face of a beta sheet functioning as the substrate-binding and catalytically-active groove of a thermophile cellulase (Rhodothermus marinus Cel12A) to cause it to resemble, both in its structure and function, the equivalent groove of a mesophile homolog (Trichoderma reesei Cel12A). The engineered protein, a mesoactive-thermostable cellulase (MT Cel12A) displays the temperature of optimal function of its mesophile ancestor and the temperature of melting of its thermophile ancestor, suggesting that such 'grafting' of a mesophile-derived surface onto a thermophile-derived structural scaffold can potentially help generate novel enzymes that recombine structural and functional features of homologous proteins sourced from different domains of life.


Assuntos
Celulases/química , Engenharia de Proteínas/métodos , Rhodothermus/enzimologia , Homologia Estrutural de Proteína , Temperatura , Trichoderma/enzimologia , Sequência de Aminoácidos , Domínio Catalítico/genética , Celulases/genética , Celulases/metabolismo , Concentração de Íons de Hidrogênio , Modelos Moleculares , Dados de Sequência Molecular , Desnaturação Proteica/genética , Dobramento de Proteína , Estrutura Secundária de Proteína , Rhodothermus/genética , Rhodothermus/metabolismo , Propriedades de Superfície , Termodinâmica , Temperatura de Transição , Trichoderma/genética , Trichoderma/metabolismo
11.
Acta Crystallogr D Biol Crystallogr ; 65(Pt 1): 67-73, 2009 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19153468

RESUMO

Fibroblast growth factors (FGFs) are involved in diverse cellular processes such as cell migration, angiogenesis, osteogenesis, wound healing and embryonic and foetal development. Human acidic fibroblast growth factor (FGF-1) is the only member of the FGF family that binds with high affinity to all four FGF receptors and thus is considered to be the human mitogen with the broadest specificity. However, pharmacological applications of FGF-1 are limited owing to its low stability. It has previously been reported that the introduction of single mutations can significantly improve the stability of FGF-1 and its resistance to proteolytic degradation. Here, the structure of the Q40P/S47I/H93G triple mutant of FGF-1, which exhibits much higher stability, a prolonged half-life and enhanced mitogenic activity, is presented. Compared with the wild-type structure, three localized conformational changes in the stable triple mutant were observed, which is in agreement with the perfect energetic additivity of the single mutations described in a previous study. The huge change in FGF-1 stability (the denaturation temperature increased by 21.5 K, equivalent to DeltaDeltaG(den) = 24.3 kJ mol(-1)) seems to result from the formation of a short 3(10)-helix (position 40), an improvement in the propensity of amino acids to form beta-sheets (position 47) and the rearrangement of a local hydrogen-bond network (positions 47 and 93).


Assuntos
Fator 1 de Crescimento de Fibroblastos/química , Mutação , Proteínas Recombinantes/genética , Clonagem Molecular , Cristalização , Cristalografia por Raios X , Fator 1 de Crescimento de Fibroblastos/genética , Fator 1 de Crescimento de Fibroblastos/metabolismo , Meia-Vida , Humanos , Ligação de Hidrogênio , Mutagênese Sítio-Dirigida , Conformação Proteica , Desnaturação Proteica/genética , Estabilidade Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/metabolismo , Termodinâmica
12.
J Neurochem ; 110(2): 719-33, 2009 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-19457084

RESUMO

Proteosomal degradation of proteins is one of the major mechanisms of intracellular protein turnover. Failure of the proteosome to degrade misfolded protein is implicated in the accumulation of alpha-synuclein in Parkinson's disease (PD). Heme oxygenase-1 (HO-1), an enzyme that converts heme to free iron, carbon monoxide (CO) and biliverdin (bilirubin precursor) is expressed in response to various stressors. HO-1 is up-regulated in PD- and Alzheimer's disease-affected neural tissues. In this study, we found that HO-1 over-expression engenders dose-dependent decreases in alpha-synuclein protein levels in human neuroblastoma M17 cells. When over-expression of HO-1 was silenced in HO-1 transfected cells, level of alpha-synuclein was restored. Likewise, treatment of HO-1 over-expressing cells with the HO-1 inhibitor, tin mesoporphyrin, the iron chelator deferoxamine or antagonist of CO-dependent cGMP activation, methylene blue, mitigated the HO-1-induced reduction in alpha-synuclein levels. Furthermore, when HO-1 over-expressing cells were treated with the proteosome inhibitors, lactacystin and MG132, level of alpha-synuclein was almost completely restored. In contrast to the effect on alpha-synuclein [wild-type (WT)] levels, HO-1 over-expression did not significantly impact PD-associated alpha-synuclein (A30P) levels in these cells. HO-1 also significantly reduced aggregation of alpha-synuclein (WT) but not that of A30P. Our results suggest that HO-1, which is expressed when neurons are exposed to toxic stimuli capable of inducing protein misfolding, triggers proteosomal degradation of proteins and prevents intracellular accumulation of protein aggregates and inclusions. Resistance to HO-1 induced proteosomal degradation may render the familial PD-associated A30P mutation prone to toxic intracellular aggregation.


Assuntos
Regulação Enzimológica da Expressão Gênica/genética , Heme Oxigenase-1/genética , Neuroblastoma/metabolismo , Doença de Parkinson/metabolismo , Complexo de Endopeptidases do Proteassoma/metabolismo , alfa-Sinucleína/metabolismo , Animais , Inativação Gênica , Heme Oxigenase-1/biossíntese , Heme Oxigenase-1/deficiência , Humanos , Mutação , Neuroblastoma/enzimologia , Neuroblastoma/genética , Doença de Parkinson/genética , Complexo de Endopeptidases do Proteassoma/genética , Complexo de Endopeptidases do Proteassoma/fisiologia , Desnaturação Proteica/genética , Estabilidade Proteica , Ratos , Células Tumorais Cultivadas , alfa-Sinucleína/antagonistas & inibidores , alfa-Sinucleína/genética
13.
J Cell Biol ; 150(1): 77-88, 2000 Jul 10.
Artigo em Inglês | MEDLINE | ID: mdl-10893258

RESUMO

The unfolded protein response (UPR) is an intracellular signaling pathway that relays signals from the lumen of the ER to activate target genes in the nucleus. We devised a genetic screen in the yeast Saccharomyces cerevisiae to isolate mutants that are dependent on activation of the pathway for viability. Using this strategy, we isolated mutants affecting various aspects of ER function, including protein translocation, folding, glycosylation, glycosylphosphatidylinositol modification, and ER-associated protein degradation (ERAD). Extending results gleaned from the genetic studies, we demonstrate that the UPR regulates trafficking of proteins at the translocon to balance the needs of biosynthesis and ERAD. The approach also revealed connections of the UPR to other regulatory pathways. In particular, we identified SON1/RPN4, a recently described transcriptional regulator for genes encoding subunits of the proteasome. Our genetic strategy, therefore, offers a powerful means to provide insight into the physiology of the UPR and to identify novel genes with roles in many aspects of secretory and membrane protein biogenesis.


Assuntos
Retículo Endoplasmático/metabolismo , Proteínas de Membrana/biossíntese , Dobramento de Proteína , Proteínas de Saccharomyces cerevisiae , Saccharomyces cerevisiae/metabolismo , Clonagem Molecular , Cisteína Endopeptidases , Proteínas de Ligação a DNA/genética , Proteínas de Ligação a DNA/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Genes Reguladores/genética , Teste de Complementação Genética , Glicosilação , Glicosilfosfatidilinositóis/metabolismo , Complexos Multienzimáticos , Mutagênese , Complexo de Endopeptidases do Proteassoma , Desnaturação Proteica/genética , Processamento de Proteína Pós-Traducional , Saccharomyces cerevisiae/genética , Transdução de Sinais , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo
14.
Biochim Biophys Acta ; 1774(8): 975-84, 2007 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-17644457

RESUMO

We have taken advantage of the intrinsic fluorescence properties of chitosanases to rapidly and quantitatively evaluate the protective effect of chitosan against thermal denaturation of chitosanases. The studies were done using wild type chitosanases N174 produced by Streptomyces sp. N174 and SCO produced by Streptomyces coelicolor A3(2). In addition, two mutants of N174 genetically engineered by single amino acid substitutions (A104L and K164R) and one "consensus" (N174-CONS) chitosanase designed by multiple amino acid substitutions of N174 were analyzed. Chitosan used had a weight average molecular weight (Mw) of 220 kDa and was 85% deacetylated. Results showed a pH and concentration-dependent protective effect of chitosan in all the cases. However, the extent of thermal protection varied depending on chitosanases, suggesting that key amino acid residues contributed to resistance to heat denaturation. The transition temperatures (T(m)) of N174 were 54 degrees C and 69.5 degrees C in the absence and presence (6 g/l) of chitosan, respectively. T(m) were increased by 11.6 degrees C (N174-CONS), 13.8 degrees C (CSN-A104L), 15.6 degrees C (N174-K164R) and 25.2 degrees C (SCO) in the presence of chitosan (6 g/l). The thermal protective effect was attributed to an enzyme-ligand thermostabilization mechanism since it was not mimicked by the presence of anionic (carboxymethyl cellulose, heparin) or cationic (polyethylene imine) polymers, polyhydroxylated (glycerol, sorbitol) compounds or inorganic salts. Furthermore, the data from fluorometry experiments were in agreement with those obtained by analysis of reaction time-courses performed at 61 degrees C in which case CSN-A104L was rapidly inactivated whereas N174, N174-CONS and N174-K164R remained active over a reaction time of 90 min. This study presents evidence that (1) the fluorometric determination of T(m) in the presence of chitosan is a reliable technique for a rapid assessment of the thermal behavior of chitosanases, (2) it is applicable to structure-function studies of mutant chitosanases and, (3) it can be useful to provide an insight into the mechanism by which mutations can influence chitosanase stability.


Assuntos
Substituição de Aminoácidos , Proteínas de Bactérias/química , Quitosana/química , Glicosídeo Hidrolases/química , Dobramento de Proteína , Streptomyces coelicolor/enzimologia , Proteínas de Bactérias/genética , Catálise , Glicosídeo Hidrolases/genética , Temperatura Alta , Concentração de Íons de Hidrogênio , Desnaturação Proteica/genética , Espectrometria de Fluorescência , Streptomyces coelicolor/genética , Relação Estrutura-Atividade
15.
Proteins ; 70(4): 1280-93, 2008 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-17876824

RESUMO

Directed evolution techniques have been used to improve the thermal stability of the xylanase A from Bacillus subtilis (XylA). Two generations of random mutant libraries generated by error prone PCR coupled with a single generation of DNA shuffling produced a series of mutant proteins with increasing thermostability. The most Thermostable XylA variant from the third generation contained four mutations Q7H, G13R, S22P, and S179C that showed an increase in melting temperature of 20 degrees C. The thermodynamic properties of a representative subset of nine XylA variants showing a range of thermostabilities were measured by thermal denaturation as monitored by the change in the far ultraviolet circular dichroism signal. Analysis of the data from these thermostable variants demonstrated a correlation between the decrease in the heat capacity change (deltaC(p)) with an increase in the midpoint of the transition temperature (T(m)) on transition from the native to the unfolded state. This result could not be interpreted within the context of the changes in accessible surface area of the protein on transition from the native to unfolded states. Since all the mutations are located at the surface of the protein, these results suggest that an explanation of the decrease in deltaC(p) should include effects arising from the protein/solvent interface.


Assuntos
Bacillus subtilis/enzimologia , Evolução Molecular Direcionada , Endo-1,4-beta-Xilanases/química , Temperatura , Termodinâmica , Proteínas de Bactérias , Endo-1,4-beta-Xilanases/genética , Estabilidade Enzimática/genética , Mutação de Sentido Incorreto , Desnaturação Proteica/genética
16.
FEBS J ; 275(7): 1400-1410, 2008 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-18279386

RESUMO

Protein degradation in the cytosol of Escherichia coli is carried out by a variety of different proteolytic machines, including ClpAP. The ClpA component is a hexameric AAA+ (ATPase associated with various cellular activities) chaperone that utilizes the energy of ATP to control substrate recognition and unfolding. The precise role of the N-domains of ClpA in this process, however, remains elusive. Here, we have analysed the role of five highly conserved basic residues in the N-domain of ClpA by monitoring the binding, unfolding and degradation of several different substrates, including short unstructured peptides, tagged and untagged proteins. Interestingly, mutation of three of these basic residues within the N-domain of ClpA (H94, R86 and R100) did not alter substrate degradation. In contrast mutation of two conserved arginine residues (R90 and R131), flanking a putative peptide-binding groove within the N-domain of ClpA, specifically compromised the ability of ClpA to unfold and degrade selected substrates but did not prevent substrate recognition, ClpS-mediated substrate delivery or ClpP binding. In contrast, a highly conserved tyrosine residue lining the central pore of the ClpA hexamer was essential for the degradation of all substrate types analysed, including both folded and unstructured proteins. Taken together, these data suggest that ClpA utilizes two structural elements, one in the N-domain and the other in the pore of the hexamer, both of which are required for efficient unfolding of some protein substrates.


Assuntos
Endopeptidase Clp/química , Endopeptidase Clp/fisiologia , Proteínas de Escherichia coli/química , Proteínas de Escherichia coli/fisiologia , Chaperonas Moleculares/fisiologia , Dobramento de Proteína , Motivos de Aminoácidos/genética , Sequência de Aminoácidos , Substituição de Aminoácidos/genética , Arginina/genética , Sequência Conservada , Endopeptidase Clp/genética , Escherichia coli/enzimologia , Escherichia coli/genética , Proteínas de Escherichia coli/genética , Proteínas de Choque Térmico/genética , Chaperonas Moleculares/genética , Dados de Sequência Molecular , Mutação , Desnaturação Proteica/genética , Estrutura Terciária de Proteína/genética , Especificidade por Substrato/genética
17.
Biosci Biotechnol Biochem ; 72(11): 2998-3001, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18997417

RESUMO

The unfolded protein response (UPR) is a regulatory system to maintain the homeostasis of ER functions. Here we report a comparison of express levels of UPR relevant genes in Aspergillus oryzae between solid-state and submerged cultivation. The results were that up-regulation of the UPR mechanism in solid-state culture was higher than in submerged culture (heat-shock or non-stress conditions). This might have been a result of changing culture conditions.


Assuntos
Aspergillus oryzae/genética , Aspergillus oryzae/metabolismo , Meios de Cultura , Regulação Fúngica da Expressão Gênica , Genes Fúngicos , Resposta ao Choque Térmico/genética , Desnaturação Proteica/genética
18.
Biosci Biotechnol Biochem ; 72(9): 2467-71, 2008 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-18776672

RESUMO

An Escherichia coli hygromycin B phosphotransferase (HPH) and its thermostabilized mutant protein, HPH5, containing five amino acid substitutions, D20G, A118V, S225P, Q226L, and T246A (Nakamura et al., J. Biosci. Bioeng., 100, 158-163 (2005)), obtained by an in vivo directed evolution procedure in Thermus thermophilus, were produced and purified from E. coli recombinants, and enzymatic comparisons were performed. The optimum temperatures for enzyme activity were 50 and 55 degrees C for HPH and HPH5 respectively, but the thermal stability of the enzyme activity and the temperature for protein denaturation of HPH5 increased, from 36 and 37.2 degrees C of HPH to 53 and 58.8 degrees C respectively. Specific activities and steady-state kinetics measured at 25 degrees C showed only slight differences between the two enzymes. From these results we concluded that HPH5 was thermostabilized at the protein level, and that the mutations introduced did not affect its enzyme activity, at least under the assay conditions.


Assuntos
Proteínas de Escherichia coli/genética , Escherichia coli/enzimologia , Mutação , Fosfotransferases (Aceptor do Grupo Álcool)/análise , Fosfotransferases (Aceptor do Grupo Álcool)/genética , Estabilidade Enzimática , Escherichia coli/genética , Escherichia coli/metabolismo , Cinética , Desnaturação Proteica/genética , Proteínas Recombinantes/isolamento & purificação , Proteínas Recombinantes/metabolismo , Temperatura
19.
Int J Biochem Cell Biol ; 39(10): 1816-27, 2007.
Artigo em Inglês | MEDLINE | ID: mdl-17616428

RESUMO

Domain-domain interactions may be very important to the structure and functions of many multidomain proteins. However, little is known about the role of the linker in the folding, stability and function of multidomain proteins. In this research, muscle creatine kinase (CK), a dimeric two-domain protein, was used as a model protein to investigate the role of the linker in CK activity, stability and folding by mutational analysis. Two of the three mutations, L115D and L121D, resulted in a gradual decrease in CK activity and secondary structures, but did not affect CK inactivation induced by heat or guanidine hydrochloride (GdnHCl). The mutations also caused much more serious aggregation during heat- and GdnHCl-induced denaturation and refolding from the GdnHCl-denatured state. More importantly, none of the three mutants could successfully recover their activities by dilution-initiated refolding, and the rate constant of CK refolding was gradually decreased by the mutations. These results suggested that mutations of the hydrophobic residues in the linker might affect the correct positioning of the domains and thus disrupt the efficient recognition and interactions between the two domains. The results herein indicated that in addition to its role in the in vivo functions, the linker also played a crucial role in the stability and folding of CK.


Assuntos
Creatina Quinase Forma MM/química , Creatina Quinase Forma MM/metabolismo , Dobramento de Proteína , Sequência de Aminoácidos , Animais , Creatina Quinase Forma MM/genética , Estabilidade Enzimática , Modelos Moleculares , Dados de Sequência Molecular , Mutagênese Sítio-Dirigida , Mutação/fisiologia , Desnaturação Proteica/genética , Estrutura Terciária de Proteína/fisiologia , Coelhos , Temperatura
20.
J Med Genet ; 43(10): 769-87, 2006 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-16571647

RESUMO

Marfan syndrome (MFS), a relatively common autosomal dominant hereditary disorder of connective tissue with prominent manifestations in the skeletal, ocular, and cardiovascular systems, is caused by mutations in the gene for fibrillin-1 (FBN1). The leading cause of premature death in untreated individuals with MFS is acute aortic dissection, which often follows a period of progressive dilatation of the ascending aorta. Recent research on the molecular physiology of fibrillin and the pathophysiology of MFS and related disorders has changed our understanding of this disorder by demonstrating changes in growth factor signalling and in matrix-cell interactions. The purpose of this review is to provide a comprehensive overview of recent advances in the molecular biology of fibrillin and fibrillin-rich microfibrils. Mutations in FBN1 and other genes found in MFS and related disorders will be discussed, and novel concepts concerning the complex and multiple mechanisms of the pathogenesis of MFS will be explained.


Assuntos
Síndrome de Marfan/genética , Receptores de Ativinas Tipo I/genética , Dissecção Aórtica/genética , Animais , Aneurisma da Aorta Torácica/genética , Proteínas Contráteis/fisiologia , Bases de Dados Genéticas , Proteínas da Matriz Extracelular/fisiologia , Fibrilina-1 , Fibrilinas , Humanos , Proteínas de Ligação a TGF-beta Latente/genética , Síndrome de Marfan/complicações , Camundongos , Microfibrilas/metabolismo , Proteínas dos Microfilamentos/genética , Modelos Animais , Modelos Biológicos , Desnaturação Proteica/genética , Proteínas Serina-Treonina Quinases , Fatores de Processamento de RNA , Receptor do Fator de Crescimento Transformador beta Tipo I , Receptor do Fator de Crescimento Transformador beta Tipo II , Receptores de Fatores de Crescimento Transformadores beta/genética
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