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1.
BMC Plant Biol ; 24(1): 514, 2024 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-38849739

RESUMO

BACKGROUND: Drought is a major determinant for growth and productivity of all crops, including cereals, and the drought-induced detrimental effects are anticipated to jeopardize world food security under the ongoing global warming scenario. Biostimulants such as humic acid (HA) can improve drought tolerance in many cereals, including maize and sorghum. These two plant species are genetically related; however, maize is more susceptible to drought than sorghum. The physiological and biochemical mechanisms underlying such differential responses to water shortage in the absence and presence of HA, particularly under field conditions, are not fully understood. RESULTS: Herein, the effects of priming maize and sorghum seeds in 100 mg L-1 HA on their vegetative growth and physiological responses under increased levels of drought (100%, 80%, and 60% field capacity) were simultaneously monitored in the field. In the absence of HA, drought caused 37.0 and 58.7% reductions in biomass accumulation in maize compared to 21.2 and 32.3% in sorghum under low and high drought levels, respectively. These responses were associated with differential retardation in overall growth, relative water content (RWC), photosynthetic pigments and CO2 assimilation in both plants. In contrast, drought increased root traits as well as H2O2, malondialdehyde, and electrolyte leakage in both species. HA treatment significantly improved the growth of both plant species under well-watered and drought conditions, with maize being more responsive than sorghum. HA induced a 29.2% increase in the photosynthetic assimilation rate in maize compared to 15.0% in sorghum under high drought level. The HA-promotive effects were also associated with higher total chlorophyll, stomatal conductance, RWC, sucrose, total soluble sugars, total carbohydrates, proline, and total soluble proteins. HA also reduced the drought-induced oxidative stress via induction of non-enzymic and enzymic antioxidants at significantly different extents in maize and sorghum. CONCLUSION: The current results identify significant quantitative differences in a set of critical physiological biomarkers underlying the differential responses of field-grown maize and sorghum plants against drought. They also reveal the potential of HA priming as a drought-alleviating biostimulant and as an effective approach for sustainable maize and sorghum production and possibly other crops in drought-affected lands.


Assuntos
Secas , Substâncias Húmicas , Sorghum , Zea mays , Sorghum/fisiologia , Sorghum/crescimento & desenvolvimento , Zea mays/fisiologia , Zea mays/crescimento & desenvolvimento , Estresse Fisiológico , Fotossíntese
2.
BMC Plant Biol ; 24(1): 562, 2024 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-38877425

RESUMO

BACKGROUND: On tropical regions, phosphorus (P) fixation onto aluminum and iron oxides in soil clays restricts P diffusion from the soil to the root surface, limiting crop yields. While increased root surface area favors P uptake under low-P availability, the relationship between the three-dimensional arrangement of the root system and P efficiency remains elusive. Here, we simultaneously assessed allelic effects of loci associated with a variety of root and P efficiency traits, in addition to grain yield under low-P availability, using multi-trait genome-wide association. We also set out to establish the relationship between root architectural traits assessed in hydroponics and in a low-P soil. Our goal was to better understand the influence of root morphology and architecture in sorghum performance under low-P availability. RESULT: In general, the same alleles of associated SNPs increased root and P efficiency traits including grain yield in a low-P soil. We found that sorghum P efficiency relies on pleiotropic loci affecting root traits, which enhance grain yield under low-P availability. Root systems with enhanced surface area stemming from lateral root proliferation mostly up to 40 cm soil depth are important for sorghum adaptation to low-P soils, indicating that differences in root morphology leading to enhanced P uptake occur exactly in the soil layer where P is found at the highest concentration. CONCLUSION: Integrated QTLs detected in different mapping populations now provide a comprehensive molecular genetic framework for P efficiency studies in sorghum. This indicated extensive conservation of P efficiency QTL across populations and emphasized the terminal portion of chromosome 3 as an important region for P efficiency in sorghum. Increases in root surface area via enhancement of lateral root development is a relevant trait for sorghum low-P soil adaptation, impacting the overall architecture of the sorghum root system. In turn, particularly concerning the critical trait for water and nutrient uptake, root surface area, root system development in deeper soil layers does not occur at the expense of shallow rooting, which may be a key reason leading to the distinctive sorghum adaptation to tropical soils with multiple abiotic stresses including low P availability and drought.


Assuntos
Estudo de Associação Genômica Ampla , Fósforo , Raízes de Plantas , Locos de Características Quantitativas , Sorghum , Sorghum/genética , Sorghum/metabolismo , Sorghum/crescimento & desenvolvimento , Fósforo/metabolismo , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/metabolismo , Raízes de Plantas/genética , Raízes de Plantas/anatomia & histologia , Mapeamento Cromossômico , Polimorfismo de Nucleotídeo Único , Solo/química , Fenótipo
3.
Theor Appl Genet ; 137(10): 220, 2024 Sep 11.
Artigo em Inglês | MEDLINE | ID: mdl-39259361

RESUMO

KEY MESSAGE: We identified novel physiological and genetic responses to phosphorus starvation in sorghum diversity lines that augment current knowledge of breeding for climate-smart crops in Europe. Phosphorus (P) deficiency and finite P reserves for fertilizer production pose a threat to future global crop production. Understanding root system architecture (RSA) plasticity is central to breeding for P-efficient crops. Sorghum is regarded as a P-efficient and climate-smart crop with strong adaptability to different climatic regions of the world. Here we investigated early genetic responses of sorghum RSA to P deficiency in order to identified genotypes with interesting root phenotypes and responses under low P. A diverse set of sorghum lines (n = 285) was genotyped using DarTSeq generating 12,472 quality genome wide single-nucleotide polymorphisms. Root phenotyping was conducted in a paper-based hydroponic rhizotron system under controlled greenhouse conditions with low and optimal P nutrition, using 16 RSA traits to describe genetic and phenotypic variability at two time points. Genotypic and phenotypic P-response variations were observed for multiple root traits at 21 and 42 days after germination with high broad sense heritability (0.38-0.76). The classification of traits revealed four distinct sorghum RSA types, with genotypes clustering separately under both low and optimal P conditions, suggesting genetic control of root responses to P availability. Association studies identified quantitative trait loci in chromosomes Sb02, Sb03, Sb04, Sb06 and Sb09 linked with genes potentially involved in P transport and stress responses. The genetic dissection of key factors underlying RSA responses to P deficiency could enable early identification of P-efficient sorghum genotypes. Genotypes with interesting RSA traits for low P environments will be incorporated into current sorghum breeding programs for later growth stages and field-based evaluations.


Assuntos
Genótipo , Fenótipo , Fósforo , Raízes de Plantas , Polimorfismo de Nucleotídeo Único , Sorghum , Sorghum/genética , Sorghum/crescimento & desenvolvimento , Sorghum/fisiologia , Fósforo/metabolismo , Fósforo/deficiência , Raízes de Plantas/crescimento & desenvolvimento , Raízes de Plantas/genética , Melhoramento Vegetal , Locos de Características Quantitativas
4.
Theor Appl Genet ; 137(6): 137, 2024 May 21.
Artigo em Inglês | MEDLINE | ID: mdl-38769163

RESUMO

KEY MESSAGE: We identified a SbPLSH1gene conferring purple leaf sheath in sorghum (sorghumbicolor(L.) Moench)and developed a functional markerfor it. The purple leaf sheath of sorghum, a trait mostly related to anthocyanin deposition, is a visually distinguishable morphological marker widely used to evaluate the purity of crop hybrids. We aimed to dissect the genetic mechanism for leaf sheath color to mine the genes regulating this trait. In this study, two F2 populations were constructed by crossing a purple leaf sheath inbred line (Gaoliangzhe) with two green leaf sheath inbred lines (BTx623 and Silimei). Based on the results of bulked-segregant analysis sequencing, bulk-segregant RNA sequencing, and map-based cloning, SbPLSH1 (Sobic.006G175700), which encodes a bHLH transcription factor on chromosome 6, was identified as the candidate gene for purple leaf sheath in sorghum. Genetic analysis demonstrated that overexpression of SbPLSH1 in Arabidopsis resulted in anthocyanin deposition and purple petiole, while two single-nucleotide polymorphism (SNP) variants on the exon 6 resulted in loss of function. Further haplotype analysis revealed that there were two missense mutations and one cis-acting element mutation in SbPLSH1, which are closely associated with leaf sheath color in sorghum. Based on the variations, a functional marker (LSC4-2) for marker-assisted selection was developed, which has a broad-spectrum capability of distinguishing leaf sheath color in natural variants. In summary, this study lays a foundation for analyzing the genetic mechanism for sorghum leaf sheath color.


Assuntos
Antocianinas , Folhas de Planta , Polimorfismo de Nucleotídeo Único , Sorghum , Sorghum/genética , Sorghum/crescimento & desenvolvimento , Folhas de Planta/genética , Folhas de Planta/crescimento & desenvolvimento , Antocianinas/metabolismo , Marcadores Genéticos , Fenótipo , Pigmentação/genética , Mapeamento Cromossômico , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Arabidopsis/genética , Fatores de Transcrição Hélice-Alça-Hélice Básicos/genética , Fatores de Transcrição Hélice-Alça-Hélice Básicos/metabolismo , Genes de Plantas , Plantas Geneticamente Modificadas/genética , Haplótipos , Regulação da Expressão Gênica de Plantas
5.
Molecules ; 29(18)2024 Sep 16.
Artigo em Inglês | MEDLINE | ID: mdl-39339392

RESUMO

The utilization of biomass ash in sustainable agriculture and increasing its fertilizing efficiency by biological agents, potentially sequestering CO2, have become important issues for the global economy. The aim of this paper was to investigate the effects of ash from sorghum (Sorghum bicolor L. Moench) and Jerusalem artichoke (Helianthus tuberosus L.) biomass, a biogas plant digestate, and a Spirodela polyrhiza extract, acting alone or synergistically, on soil fertility and the development, health and physiological properties of sorghum plants. The results show novel information concerning differences in the composition and impact of ash, depending on its origin, soil properties and sorghum plant development. Sorghum ash was more effective than that from Jerusalem artichoke. Ash used alone and preferably acting synergistically with the digestate and Spirodela polyrhiza extract greatly increased soil fertility and the growth, biomass yield and health of sorghum plants. These improvements were associated with an increased chlorophyll content in leaves, better gas exchange (photosynthesis, transpiration, stomatal conductance), greater enzyme activity (acid and alkaline phosphatase, RNase, and total dehydrogenase), and a higher biomass energy value. The developed treatments improved environmental conditions by replacing synthetic fertilizers, increasing the sequestration of CO2, solving the ash storage problem, reducing the need for pesticides, and enabling a closed circulation of nutrients between plant and soil, maintaining high soil fertility.


Assuntos
Biomassa , Dióxido de Carbono , Fertilizantes , Extratos Vegetais , Sorghum , Sorghum/crescimento & desenvolvimento , Sorghum/metabolismo , Dióxido de Carbono/metabolismo , Extratos Vegetais/química , Solo/química , Produtos Agrícolas/crescimento & desenvolvimento , Produtos Agrícolas/metabolismo , Fotossíntese , Helianthus/crescimento & desenvolvimento , Helianthus/metabolismo , Clorofila/metabolismo , Biocombustíveis , Folhas de Planta/metabolismo , Folhas de Planta/química
6.
Plant Cell ; 32(11): 3500-3518, 2020 11.
Artigo em Inglês | MEDLINE | ID: mdl-32873633

RESUMO

Sorghum (Sorghum bicolor) and its relatives in the grass tribe Andropogoneae bear their flowers in pairs of spikelets in which one spikelet (seed-bearing or sessile spikelet [SS]) of the pair produces a seed and the other is sterile or male (staminate). This division of function does not occur in other major cereals such as wheat (Triticum aestivum) or rice (Oryza sativa). Additionally, one bract of the SS spikelet often produces a long extension, the awn, that is in the same position as, but independently derived from, that of wheat and rice. The function of the sterile spikelet is unknown and that of the awn has not been tested in Andropogoneae. We used radioactive and stable isotopes of carbon, RNA sequencing of metabolically important enzymes, and immunolocalization of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) to show that the sterile spikelet assimilates carbon, which is translocated to the largely heterotrophic SS. The awn shows no evidence of photosynthesis. These results apply to distantly related species of Andropogoneae. Removal of sterile spikelets in sorghum significantly decreases seed weight (yield) by ∼9%. Thus, the sterile spikelet, but not the awn, affects yield in the cultivated species and fitness in the wild species.


Assuntos
Proteínas de Plantas/metabolismo , Ribulose-Bifosfato Carboxilase/metabolismo , Sorghum/fisiologia , Andropogon/fisiologia , Carbono/metabolismo , Radioisótopos de Carbono , Regulação da Expressão Gênica de Plantas , Marcação por Isótopo , Malatos/metabolismo , Células do Mesofilo , Fotossíntese/genética , Folhas de Planta/genética , Proteínas de Plantas/genética , Poaceae/crescimento & desenvolvimento , Poaceae/fisiologia , Análise de Sequência de RNA , Sorghum/crescimento & desenvolvimento
7.
Plant J ; 108(1): 231-243, 2021 10.
Artigo em Inglês | MEDLINE | ID: mdl-34309934

RESUMO

Variation in grain size, a major determinant of grain yield and quality in cereal crops, is determined by both the plant's genetic potential and the available assimilate to fill the grain in the absence of stress. This study investigated grain size variation in response to variation in assimilate supply in sorghum using a diversity panel (n = 837) and a backcross-nested association mapping population (n = 1421) across four experiments. To explore the effects of genetic potential and assimilate availability on grain size, the top half of selected panicles was removed at anthesis. Results showed substantial variation in five grain size parameters with high heritability. Artificial reduction in grain number resulted in a general increase in grain weight, with the extent of the increase varying across genotypes. Genome-wide association studies identified 44 grain size quantitative trait locus (QTL) that were likely to act on assimilate availability and 50 QTL that were likely to act on genetic potential. This finding was further supported by functional enrichment analysis and co-location analysis with known grain number QTL and candidate genes. RNA interference and overexpression experiments were conducted to validate the function of one of the identified gene, SbDEP1, showing that SbDEP1 positively regulates grain number and negatively regulates grain size by controlling primary branching in sorghum. Haplotype analysis of SbDEP1 suggested a possible role in racial differentiation. The enhanced understanding of grain size variation in relation to assimilate availability presented in this study will benefit sorghum improvement and have implications for other cereal crops.


Assuntos
Locos de Características Quantitativas/genética , Sorghum/genética , Produtos Agrícolas , Grão Comestível/genética , Grão Comestível/crescimento & desenvolvimento , Estudo de Associação Genômica Ampla , Genótipo , Haplótipos , Fenótipo , Sementes/genética , Sementes/crescimento & desenvolvimento , Sorghum/crescimento & desenvolvimento
8.
Plant J ; 107(2): 343-359, 2021 07.
Artigo em Inglês | MEDLINE | ID: mdl-34087011

RESUMO

The most productive C4 food and biofuel crops, such as Saccharum officinarum (sugarcane), Sorghum bicolor (sorghum) and Zea mays (maize), all use NADP-ME-type C4 photosynthesis. Despite high productivities, these crops fall well short of the theoretical maximum solar conversion efficiency of 6%. Understanding the basis of these inefficiencies is key for bioengineering and breeding strategies to increase the sustainable productivity of these major C4 crops. Photosynthesis is studied predominantly at steady state in saturating light. In field stands of these crops light is continually changing, and often with rapid fluctuations. Although light may change in a second, the adjustment of photosynthesis may take many minutes, leading to inefficiencies. We measured the rates of CO2 uptake and stomatal conductance of maize, sorghum and sugarcane under fluctuating light regimes. The gas exchange results were combined with a new dynamic photosynthesis model to infer the limiting factors under non-steady-state conditions. The dynamic photosynthesis model was developed from an existing C4 metabolic model for maize and extended to include: (i) post-translational regulation of key photosynthetic enzymes and their temperature responses; (ii) dynamic stomatal conductance; and (iii) leaf energy balance. Testing the model outputs against measured rates of leaf CO2 uptake and stomatal conductance in the three C4 crops indicated that Rubisco activase, the pyruvate phosphate dikinase regulatory protein and stomatal conductance are the major limitations to the efficiency of NADP-ME-type C4 photosynthesis during dark-to-high light transitions. We propose that the level of influence of these limiting factors make them targets for bioengineering the improved photosynthetic efficiency of these key crops.


Assuntos
Produção Agrícola/métodos , Modelos Biológicos , Fotossíntese , Saccharum/crescimento & desenvolvimento , Sorghum/crescimento & desenvolvimento , Zea mays/crescimento & desenvolvimento , Dióxido de Carbono/metabolismo , Produtos Agrícolas/crescimento & desenvolvimento , Produtos Agrícolas/metabolismo , Luz , Saccharum/metabolismo , Sorghum/metabolismo , Zea mays/metabolismo
9.
Plant J ; 105(4): 1053-1071, 2021 02.
Artigo em Inglês | MEDLINE | ID: mdl-33211340

RESUMO

Stems of bioenergy sorghum (Sorghum bicolor L. Moench.), a drought-tolerant C4 grass, contain up to 50 nodes and internodes of varying length that span 4-5 m and account for approximately 84% of harvested biomass. Stem internode growth impacts plant height and biomass accumulation and is regulated by brassinosteroid signaling, auxin transport, and gibberellin biosynthesis. In addition, an AGCVIII kinase (Dw2) regulates sorghum stem internode growth, but the underlying mechanism and signaling network are unknown. Here we provide evidence that mutation of Dw2 reduces cell proliferation in internode intercalary meristems, inhibits endocytosis, and alters the distribution of heteroxylan and mixed linkage glucan in cell walls. Phosphoproteomic analysis showed that Dw2 signaling influences the phosphorylation of proteins involved in lipid signaling (PLDδ), endomembrane trafficking, hormone, light, and receptor signaling, and photosynthesis. Together, our results show that Dw2 modulates endomembrane function and cell division during sorghum internode growth, providing insight into the regulation of monocot stem development.


Assuntos
Proliferação de Células/fisiologia , Parede Celular/metabolismo , Proteínas de Plantas/metabolismo , Caules de Planta/metabolismo , Sorghum/fisiologia , Xilanos/metabolismo , Cromatografia Gasosa-Espectrometria de Massas , Hibridização In Situ , Microscopia Confocal , Fosforilação , Proteínas de Plantas/fisiologia , Caules de Planta/crescimento & desenvolvimento , Caules de Planta/fisiologia , Feixe Vascular de Plantas/metabolismo , Feixe Vascular de Plantas/fisiologia , Feixe Vascular de Plantas/ultraestrutura , Proteômica , Sorghum/enzimologia , Sorghum/crescimento & desenvolvimento , Sorghum/metabolismo
10.
Plant Mol Biol ; 108(1-2): 1-14, 2022 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34846608

RESUMO

KEY MESSAGE: Developing embryo and endosperm of sorghum show substantial and multifaceted differences in gene expression and alternative splicing, which are potentially relevant to heterosis. Differential regulation of gene expression and alternative splicing (AS) are major molecular mechanisms dictating plant growth and development, as well as underpinning heterosis in F1 hybrids. Here, using deep RNA-sequencing we analyzed differences in genome-wide gene expression and AS between developing embryo and endosperm, and between F1 hybrids and their pure-line parents in sorghum. We uncover dramatic differences in both gene expression and AS between embryo and endosperm with respect to gene features and functions, which are consistent with the fundamentally different biological roles of the two tissues. Accordingly, F1 hybrids showed substantial and multifaceted differences in gene expression and AS compared with their pure-line parents, again with clear tissue specificities including extents of difference, genes involved and functional enrichments. Our results provide useful transcriptome resources as well as novel insights for further elucidation of seed yield heterosis in sorghum and related crops.


Assuntos
Processamento Alternativo/genética , Endosperma/crescimento & desenvolvimento , Regulação da Expressão Gênica de Plantas/genética , Sementes/crescimento & desenvolvimento , Sorghum/genética , Endosperma/genética , Expressão Gênica/genética , Sequenciamento de Nucleotídeos em Larga Escala , Hibridização Genética/genética , Reação em Cadeia da Polimerase Via Transcriptase Reversa , Sementes/genética , Sorghum/crescimento & desenvolvimento , Sorghum/metabolismo , Especificidade da Espécie
11.
Plant Physiol ; 186(3): 1562-1579, 2021 07 06.
Artigo em Inglês | MEDLINE | ID: mdl-33856488

RESUMO

Stomatal density (SD) and stomatal complex area (SCA) are important traits that regulate gas exchange and abiotic stress response in plants. Despite sorghum (Sorghum bicolor) adaptation to arid conditions, the genetic potential of stomata-related traits remains unexplored due to challenges in available phenotyping methods. Hence, identifying loci that control stomatal traits is fundamental to designing strategies to breed sorghum with optimized stomatal regulation. We implemented both classical and deep learning methods to characterize genetic diversity in 311 grain sorghum accessions for stomatal traits at two different field environments. Nearly 12,000 images collected from abaxial (Ab) and adaxial (Ad) leaf surfaces revealed substantial variation in stomatal traits. Our study demonstrated significant accuracy between manual and deep learning methods in predicting SD and SCA. In sorghum, SD was 32%-39% greater on the Ab versus the Ad surface, while SCA on the Ab surface was 2%-5% smaller than on the Ad surface. Genome-Wide Association Study identified 71 genetic loci (38 were environment-specific) with significant genotype to phenotype associations for stomatal traits. Putative causal genes underlying the phenotypic variation were identified. Accessions with similar SCA but carrying contrasting haplotypes for SD were tested for stomatal conductance and carbon assimilation under field conditions. Our findings provide a foundation for further studies on the genetic and molecular mechanisms controlling stomata patterning and regulation in sorghum. An integrated physiological, deep learning, and genomic approach allowed us to unravel the genetic control of natural variation in stomata traits in sorghum, which can be applied to other plants.


Assuntos
Estudo de Associação Genômica Ampla , Genótipo , Fenótipo , Estômatos de Plantas/crescimento & desenvolvimento , Estômatos de Plantas/genética , Sorghum/crescimento & desenvolvimento , Sorghum/genética , Aprendizado Profundo , Grão Comestível/genética , Grão Comestível/crescimento & desenvolvimento , Regulação da Expressão Gênica no Desenvolvimento , Regulação da Expressão Gênica de Plantas , Genes de Plantas , Variação Genética , Folhas de Planta
12.
Theor Appl Genet ; 135(1): 201-216, 2022 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34633473

RESUMO

bHLH family proteins play an important role in plant stress response. However, the molecular mechanism regulating the salt response of bHLH is largely unknown. This study aimed to investigate the function and regulating mechanism of the sweet sorghum SbbHLH85 during salt stress. The results showed that SbbHLH85 was different from its homologs in other species. Also, it was a new atypical bHLH transcription factor and a key gene for root development in sweet sorghum. The overexpression of SbbHLH85 resulted in significantly increased number and length of root hairs via ABA and auxin signaling pathways, increasing the absorption of Na+. Thus, SbbHLH85 plays a negative regulatory role in the salt tolerance of sorghum. We identified a potential interaction partner of SbbHLH85, which was phosphate transporter chaperone PHF1 and modulated the distribution of phosphate, through screening a yeast two-hybrid library. Both yeast two-hybrid and BiFC experiments confirmed the interaction between SbbHLH85 and PHF1. The overexpression of SbbHLH85 led to a decrease in the expression of PHF1 as well as the content of Pi. Based on these results, we suggested that the increase in the Na+ content and the decrease in the Pi content resulted in the salt sensitivity of transgenic sorghum.


Assuntos
Fatores de Transcrição Hélice-Alça-Hélice Básicos/fisiologia , Proteínas de Plantas/fisiologia , Raízes de Plantas/crescimento & desenvolvimento , Tolerância ao Sal/fisiologia , Sorghum/fisiologia , Fatores de Transcrição Hélice-Alça-Hélice Básicos/genética , Clonagem Molecular , Perfilação da Expressão Gênica , Sequências Hélice-Alça-Hélice , Proteínas de Transporte de Fosfato/metabolismo , Proteínas de Plantas/genética , Plantas Geneticamente Modificadas , Estresse Salino , Tolerância ao Sal/genética , Transdução de Sinais , Sódio/metabolismo , Sorghum/genética , Sorghum/crescimento & desenvolvimento
13.
Int J Mol Sci ; 23(5)2022 Feb 22.
Artigo em Inglês | MEDLINE | ID: mdl-35269548

RESUMO

Grain size, grain number per panicle, and grain weight are crucial determinants of yield-related traits in cereals. Understanding the genetic basis of grain yield-related traits has been the main research object and nodal in crop science. Sorghum and maize, as very close C4 crops with high photosynthetic rates, stress tolerance and large biomass characteristics, are extensively used to produce food, feed, and biofuels worldwide. In this review, we comprehensively summarize a large number of quantitative trait loci (QTLs) associated with grain yield in sorghum and maize. We placed great emphasis on discussing 22 fine-mapped QTLs and 30 functionally characterized genes, which greatly hinders our deep understanding at the molecular mechanism level. This review provides a general overview of the comprehensive findings on grain yield QTLs and discusses the emerging trend in molecular marker-assisted breeding with these QTLs.


Assuntos
Locos de Características Quantitativas , Sorghum/crescimento & desenvolvimento , Zea mays/crescimento & desenvolvimento , Mapeamento Cromossômico , Grão Comestível/genética , Grão Comestível/crescimento & desenvolvimento , Grão Comestível/metabolismo , Fotossíntese , Melhoramento Vegetal , Sementes/genética , Sementes/crescimento & desenvolvimento , Sementes/metabolismo , Sorghum/genética , Sorghum/metabolismo , Zea mays/genética , Zea mays/metabolismo
14.
Planta ; 253(4): 82, 2021 Mar 25.
Artigo em Inglês | MEDLINE | ID: mdl-33765199

RESUMO

MAIN CONCLUSION: Plant traits of interest for sorghum breeders to develop dual-purpose varieties are stem diameter, flag leaf size, crop cycle, and number of grains per panicle. To develop dual-purpose varieties, breeders need to improve traits linked both to grain and biomass production. To identify these traits, we studied the phenotypic plasticity of eighteen traits and the performance of ten contrasting sorghum genotypes, used in West Africa. Trials were carried out in a randomized complete blocks design with four replicates from 2013 to 2016 in Bambey, Sinthiou Malem and Nioro du Rip in Senegal. The results revealed three plant types. The first type, "biomass production", contained genotypes IS15401 and SK5912, and was linked to cycle duration, leaf area, and plant height. The second type, "grain production", grouped the caudatum race sorghum 621B, F2-20 and Soumba, and was associated with the number of grains per panicle and the width of the flag leaf. The third group, "dual-purpose", corresponding to the genotypes Fadda, Nieleni and Pablo, combined some favourable traits for grain and biomass: stem diameter, internode length, number of green leaves and number of grains per panicle. The study showed that high and stable grain yields were associated with stability in flag leaf size, phenology and number of grains per panicle, and a high and stable biomass yield was associated with stability in stem diameter. Those stable plant traits might be of interest for sorghum breeders selecting to develop dual-purpose varieties.


Assuntos
Fenótipo , Sementes/crescimento & desenvolvimento , Sorghum , Adaptação Fisiológica , Biomassa , Grão Comestível/genética , Grão Comestível/crescimento & desenvolvimento , Sorghum/genética , Sorghum/crescimento & desenvolvimento
15.
Plant Cell Environ ; 44(3): 729-746, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33245145

RESUMO

Elevated tropospheric ozone concentration (O3 ) significantly reduces photosynthesis and productivity in several C4 crops including maize, switchgrass and sugarcane. However, it is unknown how O3 affects plant growth, development and productivity in sorghum (Sorghum bicolor L.), an emerging C4 bioenergy crop. Here, we investigated the effects of elevated O3 on photosynthesis, biomass and nutrient composition of a number of sorghum genotypes over two seasons in the field using free-air concentration enrichment (FACE), and in growth chambers. We also tested if elevated O3 altered the relationship between stomatal conductance and environmental conditions using two common stomatal conductance models. Sorghum genotypes showed significant variability in plant functional traits, including photosynthetic capacity, leaf N content and specific leaf area, but responded similarly to O3 . At the FACE experiment, elevated O3 did not alter net CO2 assimilation (A), stomatal conductance (gs ), stomatal sensitivity to the environment, chlorophyll fluorescence and plant biomass, but led to reductions in the maximum carboxylation capacity of phosphoenolpyruvate and increased stomatal limitation to A in both years. These findings suggest that bioenergy sorghum is tolerant to O3 and could be used to enhance biomass productivity in O3 polluted regions.


Assuntos
Ozônio/farmacologia , Fotossíntese/efeitos dos fármacos , Sorghum/metabolismo , Clorofila/metabolismo , Folhas de Planta/metabolismo , Folhas de Planta/fisiologia , Transpiração Vegetal/efeitos dos fármacos , Sorghum/efeitos dos fármacos , Sorghum/crescimento & desenvolvimento , Sorghum/fisiologia
16.
Theor Appl Genet ; 134(2): 731-742, 2021 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-33341904

RESUMO

KEY MESSAGE: A large collection of Ethiopian sorghum landraces, characterized by agro-ecology and racial-group, was found to contain high levels of diversity and admixture, with significant SNP associations identified for environmental adaptation. Sorghum [Sorghum bicolor L. (Moench)] is a major staple food crop in Ethiopia, exhibiting extensive genetic diversity with adaptations to diverse agroecologies. The environmental and climatic drivers, as well as the genomic basis of adaptation, are poorly understood in Ethiopian sorghum and are critical elements for the development of climate-resilient crops. Exploration of the genome-environment association (GEA) is important for identifying adaptive loci and predicting phenotypic variation. The current study aimed to better understand the GEA of a large collection of Ethiopian sorghum landraces (n = 940), characterized with genome-wide SNP markers, to investigate key traits related to adaptation to temperature, precipitation and altitude. The Ethiopian sorghum landrace collection was found to consist of 12 subpopulations with high levels of admixture (47%), representing all the major racial groups of cultivated sorghum with the exception of kafir. Redundancy analysis indicated that agroecology explained up to 10% of the total SNP variation, and geographical location up to 6%. GEA identified 18 significant SNP markers for environmental variables. These SNPs were found to be significantly enriched (P < 0.05) for a priori QTL for drought and cold adaptation. The findings from this study improve our understanding of the genetic control of adaptive traits in Ethiopian sorghum. Further, the Ethiopian sorghum germplasm collection provides sources of adaptation to harsh environments (cold and/or drought) that could be deployed in breeding programs globally for abiotic stress adaptation.


Assuntos
Adaptação Fisiológica , Clima , Variação Genética , Fenótipo , Melhoramento Vegetal , Proteínas de Plantas/genética , Sorghum/genética , Produtos Agrícolas/genética , Produtos Agrícolas/crescimento & desenvolvimento , Etiópia , Genoma de Planta , Estudo de Associação Genômica Ampla , Sorghum/crescimento & desenvolvimento
17.
Proc Natl Acad Sci U S A ; 115(26): 6679-6684, 2018 06 26.
Artigo em Inglês | MEDLINE | ID: mdl-29891664

RESUMO

Observed phenotypic variation in living organisms is shaped by genomes, environment, and their interactions. Flowering time under natural conditions can showcase the diverse outcome of the gene-environment interplay. However, identifying hidden patterns and specific factors underlying phenotypic plasticity under natural field conditions remains challenging. With a genetic population showing dynamic changes in flowering time, here we show that the integrated analyses of genomic responses to diverse environments is powerful to reveal the underlying genetic architecture. Specifically, the effect continuum of individual genes (Ma1 , Ma6 , FT, and ELF3) was found to vary in size and in direction along an environmental gradient that was quantified by photothermal time, a combination of two environmental factors (photoperiod and temperature). Gene-gene interaction was also contributing to the observed phenotypic plasticity. With the identified environmental index to quantitatively connect environments, a systematic genome-wide performance prediction framework was established through either genotype-specific reaction-norm parameters or genome-wide marker-effect continua. These parallel genome-wide approaches were demonstrated for in-season and on-target performance prediction by simultaneously exploiting genomics, environment profiling, and performance information. Improved understanding of mechanisms for phenotypic plasticity enables a concerted exploration that turns challenge into opportunity.


Assuntos
Interação Gene-Ambiente , Fenótipo , Sorghum/genética , Epistasia Genética , Flores/crescimento & desenvolvimento , Estudos de Associação Genética , Endogamia , Meio-Oeste dos Estados Unidos , Fotoperíodo , Melhoramento Vegetal , Polimorfismo de Nucleotídeo Único , Porto Rico , Estações do Ano , Sorghum/crescimento & desenvolvimento , Temperatura
18.
Proc Natl Acad Sci U S A ; 115(18): E4284-E4293, 2018 05 01.
Artigo em Inglês | MEDLINE | ID: mdl-29666229

RESUMO

Drought stress is a major obstacle to crop productivity, and the severity and frequency of drought are expected to increase in the coming century. Certain root-associated bacteria have been shown to mitigate the negative effects of drought stress on plant growth, and manipulation of the crop microbiome is an emerging strategy for overcoming drought stress in agricultural systems, yet the effect of drought on the development of the root microbiome is poorly understood. Through 16S rRNA amplicon and metatranscriptome sequencing, as well as root metabolomics, we demonstrate that drought delays the development of the early sorghum root microbiome and causes increased abundance and activity of monoderm bacteria, which lack an outer cell membrane and contain thick cell walls. Our data suggest that altered plant metabolism and increased activity of bacterial ATP-binding cassette (ABC) transporter genes are correlated with these shifts in community composition. Finally, inoculation experiments with monoderm isolates indicate that increased colonization of the root during drought can positively impact plant growth. Collectively, these results demonstrate the role that drought plays in restructuring the root microbiome and highlight the importance of temporal sampling when studying plant-associated microbiomes.


Assuntos
Bactérias , Microbiota , Raízes de Plantas/microbiologia , Sorghum/microbiologia , Transportadores de Cassetes de Ligação de ATP/genética , Transportadores de Cassetes de Ligação de ATP/metabolismo , Bactérias/genética , Bactérias/metabolismo , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Parede Celular/genética , Parede Celular/metabolismo , Desidratação/metabolismo , Desidratação/microbiologia , Raízes de Plantas/crescimento & desenvolvimento , RNA Bacteriano/genética , RNA Bacteriano/metabolismo , RNA Ribossômico 16S/genética , RNA Ribossômico 16S/metabolismo , Sorghum/crescimento & desenvolvimento
19.
Ecotoxicol Environ Saf ; 214: 112019, 2021 May.
Artigo em Inglês | MEDLINE | ID: mdl-33639494

RESUMO

Cd is a common pollutant that contaminates the ecological environment of soil-crop systems and threatens food security and human health. Sorghum (Sorghum bicolor (L.) Moench) has a great potential for use as energy feedstock and Cd phytoremediation. Therefore, the identification of sorghum genotypes with high Cd accumulation is of great significance to Cd pollution remediation and production of bioenergy. A total of 126 biomass sorghum genotypes grown in a Cd-polluted field were investigated, and their agronomic traits were analyzed, including plant height, leaf number, shoot dry weight (SDW), soil and plant analyzer development (SPAD) value, and concentration of metal ions at seedling stage. Plant height was an important factor for screening potential biomass sorghum species because it presented a significant correlation with the Cd concentration in shoots and SDW (P < 0.01). The highest and lowest Cd concentration in sorghum shoots were 7.88 and 0.99 mg kg-1, respectively. The Cd concentration presented a negative and significant correlation with Mn in sorghum shoots (r = -0.303, P < 0.01), which was in agreement with the results that sorghum species with high Cd concentrations have lower Mn concentrations. In the mature stage, sorghum 12530 presented higher Cd concentration and dry weight in shoots compared with other genotypes. In summary, plant height, SDW, and concentration of Mn in sorghum shoots are critical parameters that synthetically influence the accumulation of Cd in sorghum shoots.


Assuntos
Cádmio/metabolismo , Poluentes do Solo/metabolismo , Biodegradação Ambiental , Biomassa , Cádmio/análise , Grão Comestível/química , Recuperação e Remediação Ambiental , Genótipo , Humanos , Fenótipo , Desenvolvimento Vegetal , Folhas de Planta/química , Plântula/química , Solo , Poluentes do Solo/análise , Sorghum/crescimento & desenvolvimento
20.
Int J Mol Sci ; 22(18)2021 Sep 11.
Artigo em Inglês | MEDLINE | ID: mdl-34575989

RESUMO

Sorghum is one of the staple crops for millions of people in Sub-Saharan Africa (SSA) and South Asia (SA). The future climate in these sorghum production regions is likely to have unexpected short or long episodes of drought and/or high temperature (HT), which can cause significant yield losses. Therefore, to achieve food and nutritional security, drought and HT stress tolerance ability in sorghum must be genetically improved. Drought tolerance mechanism, stay green, and grain yield under stress has been widely studied. However, novel traits associated with drought (restricted transpiration and root architecture) need to be explored and utilized in breeding. In sorghum, knowledge on the traits associated with HT tolerance is limited. Heat shock transcription factors, dehydrins, and genes associated with hormones such as auxin, ethylene, and abscisic acid and compatible solutes are involved in drought stress modulation. In contrast, our understanding of HT tolerance at the omic level is limited and needs attention. Breeding programs have exploited limited traits with narrow genetic and genomic resources to develop drought or heat tolerant lines. Reproductive stages of sorghum are relatively more sensitive to stress compared to vegetative stages. Therefore, breeding should incorporate appropriate pre-flowering and post-flowering tolerance in a broad genetic base population and in heterotic hybrid breeding pipelines. Currently, more than 240 QTLs are reported for drought tolerance-associated traits in sorghum prospecting discovery of trait markers. Identifying traits and better understanding of physiological and genetic mechanisms and quantification of genetic variability for these traits may enhance HT tolerance. Drought and HT tolerance can be improved by better understanding mechanisms associated with tolerance and screening large germplasm collections to identify tolerant lines and incorporation of those traits into elite breeding lines. Systems approaches help in identifying the best donors of tolerance to be incorporated in the SSA and SA sorghum breeding programs. Integrated breeding with use of high-throughput precision phenomics and genomics can deliver a range of drought and HT tolerant genotypes that can improve yield and resilience of sorghum under drought and HT stresses.


Assuntos
Resistência à Doença/genética , Resposta ao Choque Térmico/genética , Melhoramento Vegetal , Característica Quantitativa Herdável , Sorghum , Desidratação/genética , Sorghum/genética , Sorghum/crescimento & desenvolvimento
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