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Alignathon: a competitive assessment of whole-genome alignment methods.
Earl, Dent; Nguyen, Ngan; Hickey, Glenn; Harris, Robert S; Fitzgerald, Stephen; Beal, Kathryn; Seledtsov, Igor; Molodtsov, Vladimir; Raney, Brian J; Clawson, Hiram; Kim, Jaebum; Kemena, Carsten; Chang, Jia-Ming; Erb, Ionas; Poliakov, Alexander; Hou, Minmei; Herrero, Javier; Kent, William James; Solovyev, Victor; Darling, Aaron E; Ma, Jian; Notredame, Cedric; Brudno, Michael; Dubchak, Inna; Haussler, David; Paten, Benedict.
Affiliation
  • Earl D; Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA; Biomolecular Engineering Department, University of California Santa Cruz, Santa Cruz, California 95064, USA;
  • Nguyen N; Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA; Biomolecular Engineering Department, University of California Santa Cruz, Santa Cruz, California 95064, USA;
  • Hickey G; School of Computer Science, McGill University, Montreal, QC H3A 0G4, Canada;
  • Harris RS; Department of Biology, The Pennsylvania State University, University Park, Pennsylvania 16801, USA;
  • Fitzgerald S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom;
  • Beal K; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom;
  • Seledtsov I; Softberry Inc., Mount Kisco, New York 10549, USA;
  • Molodtsov V; Softberry Inc., Mount Kisco, New York 10549, USA;
  • Raney BJ; Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA;
  • Clawson H; Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA;
  • Kim J; Department of Animal Biotechnology, Konkuk University, Seoul 143-701, Korea;
  • Kemena C; Centre For Genomic Regulation (CRG), 08003 Barcelona, Spain; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain; Westfalian Wilhelms University, Institute of Evolution and Biodiversity, 48149 Muenster, Germany;
  • Chang JM; Centre For Genomic Regulation (CRG), 08003 Barcelona, Spain; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain; Institute of Human Genetics (IGH), UPR 1142, CNRS, Montpellier, France;
  • Erb I; Centre For Genomic Regulation (CRG), 08003 Barcelona, Spain; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain;
  • Poliakov A; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA;
  • Hou M; Department of Computer Science, Northern Illinois University, DeKalb, Illinois 60115, USA;
  • Herrero J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, United Kingdom; The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH, United Kingdom;
  • Kent WJ; Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA; Biomolecular Engineering Department, University of California Santa Cruz, Santa Cruz, California 95064, USA;
  • Solovyev V; Softberry Inc., Mount Kisco, New York 10549, USA;
  • Darling AE; ithree Institute, University of Technology Sydney, NSW 2007, Australia;
  • Ma J; Department of Bioengineering and Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Illinois 61801, USA;
  • Notredame C; Centre For Genomic Regulation (CRG), 08003 Barcelona, Spain; Universitat Pompeu Fabra (UPF), 08003 Barcelona, Spain;
  • Brudno M; Department of Computer Science and the Donnelly Centre, University of Toronto, Toronto, ON M5S 3G4, Canada; Centre for Computational Medicine and the Genetics and Genome Biology Program, Hospital for Sick Children, Toronto, ON M5G 1X8, Canada;
  • Dubchak I; Department of Energy Joint Genome Institute, Walnut Creek, California 94598, USA; Lawrence Berkeley National Laboratory, Berkeley, California 94710, USA;
  • Haussler D; Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA; Biomolecular Engineering Department, University of California Santa Cruz, Santa Cruz, California 95064, USA; Howard Hughes Medical Institute, Chevy Chase, Maryland 20815-6789, USA
  • Paten B; Center for Biomolecular Science and Engineering, University of California Santa Cruz, Santa Cruz, California 95064, USA; Biomolecular Engineering Department, University of California Santa Cruz, Santa Cruz, California 95064, USA;
Genome Res ; 24(12): 2077-89, 2014 Dec.
Article in En | MEDLINE | ID: mdl-25273068
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Sequence Alignment / Genome / Genomics Type of study: Prognostic_studies Limits: Animals / Humans Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2014 Type: Article
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Sequence Alignment / Genome / Genomics Type of study: Prognostic_studies Limits: Animals / Humans Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2014 Type: Article