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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.
Sczyrba, Alexander; Hofmann, Peter; Belmann, Peter; Koslicki, David; Janssen, Stefan; Dröge, Johannes; Gregor, Ivan; Majda, Stephan; Fiedler, Jessika; Dahms, Eik; Bremges, Andreas; Fritz, Adrian; Garrido-Oter, Ruben; Jørgensen, Tue Sparholt; Shapiro, Nicole; Blood, Philip D; Gurevich, Alexey; Bai, Yang; Turaev, Dmitrij; DeMaere, Matthew Z; Chikhi, Rayan; Nagarajan, Niranjan; Quince, Christopher; Meyer, Fernando; Balvociute, Monika; Hansen, Lars Hestbjerg; Sørensen, Søren J; Chia, Burton K H; Denis, Bertrand; Froula, Jeff L; Wang, Zhong; Egan, Robert; Don Kang, Dongwan; Cook, Jeffrey J; Deltel, Charles; Beckstette, Michael; Lemaitre, Claire; Peterlongo, Pierre; Rizk, Guillaume; Lavenier, Dominique; Wu, Yu-Wei; Singer, Steven W; Jain, Chirag; Strous, Marc; Klingenberg, Heiner; Meinicke, Peter; Barton, Michael D; Lingner, Thomas; Lin, Hsin-Hung; Liao, Yu-Chieh.
Affiliation
  • Sczyrba A; Faculty of Technology, Bielefeld University, Bielefeld, Germany.
  • Hofmann P; Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
  • Belmann P; Formerly Department of Algorithmic Bioinformatics, Heinrich Heine University (HHU), Duesseldorf, Germany.
  • Koslicki D; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Janssen S; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • Dröge J; Faculty of Technology, Bielefeld University, Bielefeld, Germany.
  • Gregor I; Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
  • Majda S; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Fiedler J; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • Dahms E; Mathematics Department, Oregon State University, Corvallis, Oregon, USA.
  • Bremges A; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Fritz A; Department of Pediatrics, University of California, San Diego, California, USA.
  • Garrido-Oter R; Department of Computer Science and Engineering, University of California, San Diego, California, USA.
  • Jørgensen TS; Formerly Department of Algorithmic Bioinformatics, Heinrich Heine University (HHU), Duesseldorf, Germany.
  • Shapiro N; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Blood PD; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • Gurevich A; Formerly Department of Algorithmic Bioinformatics, Heinrich Heine University (HHU), Duesseldorf, Germany.
  • Bai Y; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Turaev D; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • DeMaere MZ; Formerly Department of Algorithmic Bioinformatics, Heinrich Heine University (HHU), Duesseldorf, Germany.
  • Chikhi R; Formerly Department of Algorithmic Bioinformatics, Heinrich Heine University (HHU), Duesseldorf, Germany.
  • Nagarajan N; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Quince C; Formerly Department of Algorithmic Bioinformatics, Heinrich Heine University (HHU), Duesseldorf, Germany.
  • Meyer F; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Balvociute M; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • Hansen LH; Faculty of Technology, Bielefeld University, Bielefeld, Germany.
  • Sørensen SJ; Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
  • Chia BKH; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Denis B; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • Froula JL; German Center for Infection Research (DZIF), partner site Hannover-Braunschweig, Braunschweig, Germany.
  • Wang Z; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Egan R; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • Don Kang D; Formerly Department of Algorithmic Bioinformatics, Heinrich Heine University (HHU), Duesseldorf, Germany.
  • Cook JJ; Department of Computational Biology of Infection Research, Helmholtz Centre for Infection Research (HZI), Braunschweig, Germany.
  • Deltel C; Braunschweig Integrated Centre of Systems Biology (BRICS), Braunschweig, Germany.
  • Beckstette M; Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
  • Lemaitre C; Cluster of Excellence on Plant Sciences (CEPLAS).
  • Peterlongo P; Department of Environmental Science, Section of Environmental microbiology and Biotechnology, Aarhus University, Roskilde, Denmark.
  • Rizk G; Department of Microbiology, University of Copenhagen, Copenhagen, Denmark.
  • Lavenier D; Department of Science and Environment, Roskilde University, Roskilde, Denmark.
  • Wu YW; Department of Energy, Joint Genome Institute, Walnut Creek, California, USA.
  • Singer SW; Pittsburgh Supercomputing Center, Carnegie Mellon University, Pittsburgh, Pennsylvania, USA.
  • Jain C; Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, Saint Petersburg State University, Saint Petersburg, Russia.
  • Strous M; Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
  • Klingenberg H; Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, Austria.
  • Meinicke P; The ithree institute, University of Technology Sydney, Sydney, New South Wales, Australia.
  • Barton MD; Department of Computer Science, Research Center in Computer Science (CRIStAL), Signal and Automatic Control of Lille, Lille, France.
  • Lingner T; National Centre of the Scientific Research (CNRS), Rennes, France.
  • Lin HH; Department of Computational and Systems Biology, Genome Institute of Singapore, Singapore.
  • Liao YC; Department of Microbiology and Infection, Warwick Medical School, University of Warwick, Coventry, UK.
Nat Methods ; 14(11): 1063-1071, 2017 Nov.
Article in En | MEDLINE | ID: mdl-28967888
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Metagenomics Language: En Journal: Nat Methods Journal subject: TECNICAS E PROCEDIMENTOS DE LABORATORIO Year: 2017 Type: Article Affiliation country: Germany
Fulltext
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Software / Metagenomics Language: En Journal: Nat Methods Journal subject: TECNICAS E PROCEDIMENTOS DE LABORATORIO Year: 2017 Type: Article Affiliation country: Germany