APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data.

Leonard, Simon; Meyer, Sam; Lacour, Stephan; Nasser, William; Hommais, Florence; Reverchon, Sylvie

Leonard, Simon; Meyer, Sam; Lacour, Stephan; Nasser, William; Hommais, Florence; Reverchon, Sylvie.

Affiliation

Leonard S; Université de Lyon, INSA-Lyon, Université Claude Bernard Lyon1, CNRS UMR5240, Laboratoire de Microbiologie, Adaptation, Pathogénie, 11 avenue Jean Capelle, F-69621 Villeurbanne, France.
Meyer S; Université de Lyon, INSA-Lyon, Université Claude Bernard Lyon1, CNRS UMR5240, Laboratoire de Microbiologie, Adaptation, Pathogénie, 11 avenue Jean Capelle, F-69621 Villeurbanne, France.
Lacour S; Univ. Grenoble Alpes, CNRS, Inria, LiPhy (UMR5588), 38000 Grenoble, France.
Nasser W; Université de Lyon, INSA-Lyon, Université Claude Bernard Lyon1, CNRS UMR5240, Laboratoire de Microbiologie, Adaptation, Pathogénie, 11 avenue Jean Capelle, F-69621 Villeurbanne, France.
Hommais F; Université de Lyon, INSA-Lyon, Université Claude Bernard Lyon1, CNRS UMR5240, Laboratoire de Microbiologie, Adaptation, Pathogénie, 11 avenue Jean Capelle, F-69621 Villeurbanne, France.
Reverchon S; Université de Lyon, INSA-Lyon, Université Claude Bernard Lyon1, CNRS UMR5240, Laboratoire de Microbiologie, Adaptation, Pathogénie, 11 avenue Jean Capelle, F-69621 Villeurbanne, France.

Nucleic Acids Res ; 47(15): e88, 2019 09 05.

Article in En | MEDLINE | ID: mdl-31147705

Subject(s)

Algorithms; Escherichia coli/genetics; Genome, Bacterial; RNA, Bacterial/genetics; RNA, Messenger/genetics; RNA, Small Untranslated/genetics; Salmonella enterica/genetics; Datasets as Topic; Enterobacteriaceae/genetics; Enterobacteriaceae/metabolism; Escherichia coli/metabolism; High-Throughput Nucleotide Sequencing; Internet; RNA, Antisense/classification; RNA, Antisense/genetics; RNA, Antisense/metabolism; RNA, Bacterial/classification; RNA, Bacterial/metabolism; RNA, Messenger/classification; RNA, Messenger/metabolism; RNA, Small Untranslated/classification; RNA, Small Untranslated/metabolism; Salmonella enterica/metabolism; Sequence Analysis, RNA; Software

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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Algorithms / RNA, Bacterial / RNA, Messenger / Genome, Bacterial / Salmonella enterica / Escherichia coli / RNA, Small Untranslated Language: En Journal: Nucleic Acids Res Year: 2019 Type: Article Affiliation country: France

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