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Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes.
Armstrong, George; Cantrell, Kalen; Huang, Shi; McDonald, Daniel; Haiminen, Niina; Carrieri, Anna Paola; Zhu, Qiyun; Gonzalez, Antonio; McGrath, Imran; Beck, Kristen L; Hakim, Daniel; Havulinna, Aki S; Méric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Jain, Mohit; Inouye, Michael; Swafford, Austin D; Kim, Ho-Cheol; Parida, Laxmi; Vázquez-Baeza, Yoshiki; Knight, Rob.
Affiliation
  • Armstrong G; Department of Pediatrics, School of Medicine, University of California, San Diego, California 92093, USA.
  • Cantrell K; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California 92093, USA.
  • Huang S; Bioinformatics and Systems Biology Program, University of California, San Diego, California 92093, USA.
  • McDonald D; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California 92093, USA.
  • Haiminen N; Department of Pediatrics, School of Medicine, University of California, San Diego, California 92093, USA.
  • Carrieri AP; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California 92093, USA.
  • Zhu Q; Department of Pediatrics, School of Medicine, University of California, San Diego, California 92093, USA.
  • Gonzalez A; IBM T. J. Watson Research Center, Yorktown Heights, New York 10562, USA.
  • McGrath I; IBM Research Europe, The Hartree Centre, Warrington WA4 4AD, United Kingdom.
  • Beck KL; School of Life Sciences, Arizona State University, Tempe, Arizona 85281, USA.
  • Hakim D; Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, Arizona 85281, USA.
  • Havulinna AS; Department of Pediatrics, School of Medicine, University of California, San Diego, California 92093, USA.
  • Méric G; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, California 92093, USA.
  • Niiranen T; Division of Biological Sciences, University of California San Diego, La Jolla, California 92093, USA.
  • Lahti L; IBM Almaden Research Center, San Jose, California 95120, USA.
  • Salomaa V; Department of Pediatrics, School of Medicine, University of California, San Diego, California 92093, USA.
  • Jain M; Bioinformatics and Systems Biology Program, University of California, San Diego, California 92093, USA.
  • Inouye M; Department of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki 00271, Finland.
  • Swafford AD; Institute for Molecular Medicine Finland (FIMM), HiLIFE, University of Helsinki, Helsinki 00014, Finland.
  • Kim HC; Cambridge Baker Systems Genomics Initiative, Baker Heart and Diabetes Institute, Melbourne, Victoria 3004, Australia.
  • Parida L; Department of Infectious Diseases, Central Clinical School, Monash University, Melbourne, Victoria 3800, Australia.
  • Vázquez-Baeza Y; Department of Public Health and Welfare, Finnish Institute for Health and Welfare, Helsinki 00271, Finland.
  • Knight R; Department of Internal Medicine, University of Turku, Turku 20014, Finland.
Genome Res ; 31(11): 2131-2137, 2021 11.
Article in En | MEDLINE | ID: mdl-34479875
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Microbiota Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2021 Type: Article Affiliation country: United States
Fulltext
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PubMed Links
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Full text: 1 Collection: 01-internacional Database: MEDLINE Main subject: Microbiota Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2021 Type: Article Affiliation country: United States