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The BioMart community portal: an innovative alternative to large, centralized data repositories.
Smedley, Damian; Haider, Syed; Durinck, Steffen; Pandini, Luca; Provero, Paolo; Allen, James; Arnaiz, Olivier; Awedh, Mohammad Hamza; Baldock, Richard; Barbiera, Giulia; Bardou, Philippe; Beck, Tim; Blake, Andrew; Bonierbale, Merideth; Brookes, Anthony J; Bucci, Gabriele; Buetti, Iwan; Burge, Sarah; Cabau, Cédric; Carlson, Joseph W; Chelala, Claude; Chrysostomou, Charalambos; Cittaro, Davide; Collin, Olivier; Cordova, Raul; Cutts, Rosalind J; Dassi, Erik; Di Genova, Alex; Djari, Anis; Esposito, Anthony; Estrella, Heather; Eyras, Eduardo; Fernandez-Banet, Julio; Forbes, Simon; Free, Robert C; Fujisawa, Takatomo; Gadaleta, Emanuela; Garcia-Manteiga, Jose M; Goodstein, David; Gray, Kristian; Guerra-Assunção, José Afonso; Haggarty, Bernard; Han, Dong-Jin; Han, Byung Woo; Harris, Todd; Harshbarger, Jayson; Hastings, Robert K; Hayes, Richard D; Hoede, Claire; Hu, Shen.
Afiliación
  • Smedley D; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
  • Haider S; The Weatherall Institute Of Molecular Medicine, University of Oxford, Oxford, OX3 9DS, UK.
  • Durinck S; Genentech, Inc. 1 DNA Way South San Francisco, CA 94080, USA.
  • Pandini L; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
  • Provero P; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy Dept of Molecular Biotechnology and Health Sciences University of Turin, Italy.
  • Allen J; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
  • Arnaiz O; Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris Sud, 1 avenue de la terrasse, 91198 Gif sur Yvette, France.
  • Awedh MH; Department of Electrical and Computer Engineering, Faculty of Engineering, King Abdulaziz University, Jeddah, Saudi Arabia.
  • Baldock R; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Edinburgh, EH4 2XU, UK.
  • Barbiera G; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
  • Bardou P; Sigenae, INRA, Castanet-Tolosan, France.
  • Beck T; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
  • Blake A; MRC Harwell, Harwell Science and Innovation Campus, Oxfordshire, OX11 0RD, UK.
  • Bonierbale M; International Potato Center (CIP), Lima, 1558, Peru.
  • Brookes AJ; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
  • Bucci G; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
  • Buetti I; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
  • Burge S; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
  • Cabau C; Sigenae, INRA, Castanet-Tolosan, France.
  • Carlson JW; Department of Energy, Joint Genome Institute, Walnut Creek, USA.
  • Chelala C; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
  • Chrysostomou C; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
  • Cittaro D; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
  • Collin O; IRISA-INRIA, Campus de Beaulieu 35042 Rennes, France.
  • Cordova R; International Potato Center (CIP), Lima, 1558, Peru.
  • Cutts RJ; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
  • Dassi E; Laboratory of Translational Genomics, Centre for Integrative Biology, University of Trento, Trento, Italy.
  • Di Genova A; Center for Mathematical Modeling and Center for Genome Regulation, University of Chile, Beauchef 851, 7th floor, Chile.
  • Djari A; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
  • Esposito A; Oncology Computational Biology, Pfizer, La Jolla, USA.
  • Estrella H; Oncology Computational Biology, Pfizer, La Jolla, USA.
  • Eyras E; Catalan Institute for Research and Advanced Studies (ICREA), Passeig Lluis Companys 23, E-08010 Barcelona, Spain Universitat Pompeu Fabra, Dr Aiguader 88 E-08003 Barcelona, Spain.
  • Fernandez-Banet J; Oncology Computational Biology, Pfizer, La Jolla, USA.
  • Forbes S; Wellcome Trust Sanger Institute, Welcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
  • Free RC; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
  • Fujisawa T; Kasuza DNA Research Institute, Chiba, 292-0818, Japan.
  • Gadaleta E; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
  • Garcia-Manteiga JM; Center for Translational Genomics and Bioinformatics San Raffaele Scientific Institute, Via Olgettina 58, 20132 Milan, Italy.
  • Goodstein D; Department of Energy, Joint Genome Institute, Walnut Creek, USA.
  • Gray K; HUGO Gene Nomenclature Committee (HGNC), European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, CB10 1SD, UK.
  • Guerra-Assunção JA; Centre for Molecular Oncology, Barts Cancer Institute, Queen Mary University of London, Charterhouse Square, London EC1M 6BQ, UK.
  • Haggarty B; MRC Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital, Edinburgh, EH4 2XU, UK.
  • Han DJ; Medicinal Bioconvergence Research Center, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Department of Molecular Medicine and Biopharmaceutical Sciences, Seoul National University, Seoul 151-742, Republic of Korea.
  • Han BW; Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, Seoul 151-742, Republic of Korea Information Center for Bio-pharmacological Network, Seoul National University, Suwon 443-270, Republic of Korea.
  • Harris T; Ontario Institute for Cancer Research, Toronto, M5G 0A3, Canada.
  • Harshbarger J; RIKEN Center for Life Science Technologies (CLST), Division of Genomic Technologies (DGT), Kanagawa, 230-0045, Japan.
  • Hastings RK; Department of Genetics, University of Leicester, University Road, Leicester, LE1 7RH, UK.
  • Hayes RD; Department of Energy, Joint Genome Institute, Walnut Creek, USA.
  • Hoede C; Plate-forme bio-informatique Genotoul, Mathématiques et Informatique Appliquées de Toulouse, INRA, Castanet-Tolosan, France.
  • Hu S; School of Dentistry and Dental Research Institute, University of California Los Angeles (UCLA), Los Angeles, CA 90095-1668, USA.
Nucleic Acids Res ; 43(W1): W589-98, 2015 Jul 01.
Article en En | MEDLINE | ID: mdl-25897122
ABSTRACT
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported by 30 scientific organizations. It includes over 800 different biological datasets spanning genomics, proteomics, model organisms, cancer data, ontology information and more. All resources available through the portal are independently administered and funded by their host organizations. The BioMart data federation technology provides a unified interface to all the available data. The latest version of the portal comes with many new databases that have been created by our ever-growing community. It also comes with better support and extensibility for data analysis and visualization tools. A new addition to our toolbox, the enrichment analysis tool is now accessible through graphical and web service interface. The BioMart community portal averages over one million requests per day. Building on this level of service and the wealth of information that has become available, the BioMart Community Portal has introduced a new, more scalable and cheaper alternative to the large data stores maintained by specialized organizations.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Sistemas de Administración de Bases de Datos Límite: Humans Idioma: En Revista: Nucleic Acids Res Año: 2015 Tipo del documento: Article País de afiliación: Reino Unido
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Sistemas de Administración de Bases de Datos Límite: Humans Idioma: En Revista: Nucleic Acids Res Año: 2015 Tipo del documento: Article País de afiliación: Reino Unido