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Reducing cryoEM file storage using lossy image formats.
Eng, Edward T; Kopylov, Mykhailo; Negro, Carl J; Dallaykan, Sarkis; Rice, William J; Jordan, Kelsey D; Kelley, Kotaro; Carragher, Bridget; Potter, Clinton S.
Afiliación
  • Eng ET; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA.
  • Kopylov M; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA.
  • Negro CJ; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA.
  • Dallaykan S; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA.
  • Rice WJ; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA.
  • Jordan KD; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA.
  • Kelley K; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA.
  • Carragher B; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA.
  • Potter CS; Simons Electron Microscopy Center, New York Structural Biology Center, 89 Convent Ave, New York, NY 10027, USA; Department of Biochemistry and Molecular Biophysics, Columbia University, New York, NY 10032, USA. Electronic address: cpotter@nysbc.org.
J Struct Biol ; 207(1): 49-55, 2019 07 01.
Article en En | MEDLINE | ID: mdl-31121317
Recent advances in instrumentation and software for cryoEM have increased the applicability and utility of this method. High levels of automation and faster data acquisition rates require hard decisions to be made regarding data retention. Here we investigate the efficacy of data compression applied to aligned summed movie files. Surprisingly, these images can be compressed using a standard lossy method that reduces file storage by 90-95% and yet can still be processed to provide sub-2 Šreconstructed maps. We do not advocate this as an archival method, but it may provide a useful means for retaining images as an historical record, especially at large facilities.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Almacenamiento y Recuperación de la Información / Microscopía por Crioelectrón / Compresión de Datos Tipo de estudio: Prognostic_studies Idioma: En Revista: J Struct Biol Asunto de la revista: BIOLOGIA MOLECULAR Año: 2019 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Almacenamiento y Recuperación de la Información / Microscopía por Crioelectrón / Compresión de Datos Tipo de estudio: Prognostic_studies Idioma: En Revista: J Struct Biol Asunto de la revista: BIOLOGIA MOLECULAR Año: 2019 Tipo del documento: Article País de afiliación: Estados Unidos