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Open-source Software Sustainability Models: Initial White Paper From the Informatics Technology for Cancer Research Sustainability and Industry Partnership Working Group.
Ye, Ye; Barapatre, Seemran; Davis, Michael K; Elliston, Keith O; Davatzikos, Christos; Fedorov, Andrey; Fillion-Robin, Jean-Christophe; Foster, Ian; Gilbertson, John R; Lasso, Andras; Miller, James V; Morgan, Martin; Pieper, Steve; Raumann, Brigitte E; Sarachan, Brion D; Savova, Guergana; Silverstein, Jonathan C; Taylor, Donald P; Zelnis, Joyce B; Zhang, Guo-Qiang; Cuticchia, Jamie; Becich, Michael J.
Afiliación
  • Ye Y; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, United States.
  • Barapatre S; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, United States.
  • Davis MK; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, United States.
  • Elliston KO; Axiomedix, Inc., Bedford, MA, United States.
  • Davatzikos C; PHEMI Systems Corp., Vancouver, BC, Canada.
  • Fedorov A; tranSMART foundation, Wakefield, MA, United States.
  • Fillion-Robin JC; Department of Radiology, School of Medicine, University of Pennsylvania, Philadelphia, PA, United States.
  • Foster I; Brigham and Women's Hospital, Harvard Medical School, Boston, MA, United States.
  • Gilbertson JR; Kitware Inc., Clifton Park, NY, United States.
  • Lasso A; Department of Computer Science, University of Chicago, Chicago, IL, United States.
  • Miller JV; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, United States.
  • Morgan M; The Perk Lab for Percutaneous Surgery, School of Computing, Queen's University, Kingston, ON, Canada.
  • Pieper S; GE Global Research, Niskayuna, NY, United States.
  • Raumann BE; Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, United States.
  • Sarachan BD; Isomics Inc., Cambridge, MA, United States.
  • Savova G; Globus, University of Chicago, Chicago, IL, United States.
  • Silverstein JC; GE Global Research, Niskayuna, NY, United States.
  • Taylor DP; Boston Children's Hospital, Harvard Medical School, Boston, MA, United States.
  • Zelnis JB; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, United States.
  • Zhang GQ; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, United States.
  • Cuticchia J; Department of Biomedical Informatics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, United States.
  • Becich MJ; The University of Texas Health Science Center at Houston, Houston, TX, United States.
J Med Internet Res ; 23(12): e20028, 2021 12 02.
Article en En | MEDLINE | ID: mdl-34860667
ABSTRACT

BACKGROUND:

The National Cancer Institute Informatics Technology for Cancer Research (ITCR) program provides a series of funding mechanisms to create an ecosystem of open-source software (OSS) that serves the needs of cancer research. As the ITCR ecosystem substantially grows, it faces the challenge of the long-term sustainability of the software being developed by ITCR grantees. To address this challenge, the ITCR sustainability and industry partnership working group (SIP-WG) was convened in 2019.

OBJECTIVE:

The charter of the SIP-WG is to investigate options to enhance the long-term sustainability of the OSS being developed by ITCR, in part by developing a collection of business model archetypes that can serve as sustainability plans for ITCR OSS development initiatives. The working group assembled models from the ITCR program, from other studies, and from the engagement of its extensive network of relationships with other organizations (eg, Chan Zuckerberg Initiative, Open Source Initiative, and Software Sustainability Institute) in support of this objective.

METHODS:

This paper reviews the existing sustainability models and describes 10 OSS use cases disseminated by the SIP-WG and others, including 3D Slicer, Bioconductor, Cytoscape, Globus, i2b2 (Informatics for Integrating Biology and the Bedside) and tranSMART, Insight Toolkit, Linux, Observational Health Data Sciences and Informatics tools, R, and REDCap (Research Electronic Data Capture), in 10 sustainability aspects governance, documentation, code quality, support, ecosystem collaboration, security, legal, finance, marketing, and dependency hygiene.

RESULTS:

Information available to the public reveals that all 10 OSS have effective governance, comprehensive documentation, high code quality, reliable dependency hygiene, strong user and developer support, and active marketing. These OSS include a variety of licensing models (eg, general public license version 2, general public license version 3, Berkeley Software Distribution, and Apache 3) and financial models (eg, federal research funding, industry and membership support, and commercial support). However, detailed information on ecosystem collaboration and security is not publicly provided by most OSS.

CONCLUSIONS:

We recommend 6 essential attributes for research software alignment with unmet scientific needs, a dedicated development team, a vibrant user community, a feasible licensing model, a sustainable financial model, and effective product management. We also stress important actions to be considered in future ITCR activities that involve the discussion of the sustainability and licensing models for ITCR OSS, the establishment of a central library, the allocation of consulting resources to code quality control, ecosystem collaboration, security, and dependency hygiene.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Ecosistema / Neoplasias Límite: Humans Idioma: En Revista: J Med Internet Res Asunto de la revista: INFORMATICA MEDICA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Ecosistema / Neoplasias Límite: Humans Idioma: En Revista: J Med Internet Res Asunto de la revista: INFORMATICA MEDICA Año: 2021 Tipo del documento: Article País de afiliación: Estados Unidos