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Standards recommendations for the Earth BioGenome Project.
Lawniczak, Mara K N; Durbin, Richard; Flicek, Paul; Lindblad-Toh, Kerstin; Wei, Xiaofeng; Archibald, John M; Baker, William J; Belov, Katherine; Blaxter, Mark L; Marques Bonet, Tomas; Childers, Anna K; Coddington, Jonathan A; Crandall, Keith A; Crawford, Andrew J; Davey, Robert P; Di Palma, Federica; Fang, Qi; Haerty, Wilfried; Hall, Neil; Hoff, Katharina J; Howe, Kerstin; Jarvis, Erich D; Johnson, Warren E; Johnson, Rebecca N; Kersey, Paul J; Liu, Xin; Lopez, Jose Victor; Myers, Eugene W; Pettersson, Olga Vinnere; Phillippy, Adam M; Poelchau, Monica F; Pruitt, Kim D; Rhie, Arang; Castilla-Rubio, Juan Carlos; Sahu, Sunil Kumar; Salmon, Nicholas A; Soltis, Pamela S; Swarbreck, David; Thibaud-Nissen, Françoise; Wang, Sibo; Wegrzyn, Jill L; Zhang, Guojie; Zhang, He; Lewin, Harris A; Richards, Stephen.
Afiliación
  • Lawniczak MKN; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
  • Durbin R; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
  • Flicek P; Department of Genetics, University of Cambridge, Cambridge CB3 0DH, United Kingdom.
  • Lindblad-Toh K; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
  • Wei X; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Cambridge CB10 1SD, United Kingdom.
  • Archibald JM; Broad Institute of MIT and Harvard, Cambridge, MA 02142.
  • Baker WJ; Science for Life Laboratory, Department of Medical Biochemistry and Microbiology, Uppsala University 751 23 Uppsala, Sweden.
  • Belov K; China National GeneBank, Shenzhen 518120, China.
  • Blaxter ML; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, NS B3H 4R2, Canada.
  • Marques Bonet T; Department of Accelerated Taxonomy, Royal Botanic Gardens, Kew, Surrey TW9 3AE, United Kingdom.
  • Childers AK; School of Life and Environmental Sciences, Faculty of Science, University of Sydney, Sydney, NSW 2006, Australia.
  • Coddington JA; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
  • Crandall KA; Institute of Evolutionary Biology, Consejo Superior de Investigaciones Científicas-Universitat Pompeau Fabra, Parc de Rechercha Biomédica Barcelona 08003 Barcelona, Spain.
  • Crawford AJ; Catalan Institution of Research and Advanced Studies 08010 Barcelona, Spain.
  • Davey RP; Centre Nacional d'Anàlisi Geonòmica - Centre for Genomic Regulation, Barcelona Institute of Science and Technology 08028 Barcelona, Spain.
  • Di Palma F; Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona 08193 Barcelona, Spain.
  • Fang Q; Bee Research Laboratory, Beltsville Agricultural Research Center, US Department of Agriculture, Agricultural Research Service, Beltsville, MD 20705.
  • Haerty W; Smithsonian Institution, National Museum of Natural History, Washington, DC 20560-0105.
  • Hall N; Computational Biology Institute and Department of Biostatistics & Bioinformatics, Milken Institute School of Public Health, The George Washington University, Washington, DC 20052.
  • Hoff KJ; Department of Biological Sciences, Universidad de los Andes 111711 Bogotá, Colombia.
  • Howe K; Engineering Biology, Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, United Kingdom.
  • Jarvis ED; Genome British Columbia, Vancouver, BC V5Z 0C4, Canada.
  • Johnson WE; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen 518083, China.
  • Johnson RN; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, United Kingdom.
  • Kersey PJ; Genome British Columbia, Vancouver, BC V5Z 0C4, Canada.
  • Liu X; Earlham Institute, Norwich Research Park, Norwich NR4 7UZ, United Kingdom.
  • Lopez JV; Institute of Mathematics and Computer Science, Center for Functional Genomics of Microbes, University of Greifswald 17489 Greifswald, Germany.
  • Myers EW; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton CB10 1SA, United Kingdom.
  • Pettersson OV; Vertebrate Genomes Lab, The Rockefeller University, New York, NY 10065.
  • Phillippy AM; HHMI, Chevy Chase, MD 20815.
  • Poelchau MF; Center for Species Survival, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA 22630.
  • Pruitt KD; The Walter Reed Biosystematics Unit, Museum Support Center MRC-534, Smithsonian Institution, Suitland, MD 20746-2863.
  • Rhie A; Smithsonian Institution, National Museum of Natural History, Washington, DC 20560-0105.
  • Castilla-Rubio JC; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge CB10 1SD, United Kingdom.
  • Sahu SK; China National GeneBank, Shenzhen 518120, China.
  • Salmon NA; Halmos College of Arts and Sciences, Guy Harvey Oceanographic Center, Nova Southeastern University, Dania Beach, FL 33004.
  • Soltis PS; Department of Systems Biology, Max Planck Institute of Molecular Cell Biology and Genetics, Dresden 01307, Germany.
  • Swarbreck D; Science for Life Laboratory in Uppsala, Uppsala University 75123 Uppsala, Sweden.
  • Thibaud-Nissen F; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, NIH, Bethesda, MD 20894.
  • Wang S; National Agricultural Library, USDA Agricultural Research Service, Beltsville, MD 20705.
  • Wegrzyn JL; National Center for Biotechnology Information, National Library of Medicine, NIH, Bethesda, MD 20894.
  • Zhang G; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, NIH, Bethesda, MD 20894.
  • Zhang H; Spacetime Ventures, São Paulo 05449-050, Brazil.
  • Lewin HA; China National GeneBank, Shenzhen 518120, China.
  • Richards S; BGI-Shenzhen, Beishan Industrial Zone, Shenzhen 518083, China.
Proc Natl Acad Sci U S A ; 119(4)2022 01 25.
Article en En | MEDLINE | ID: mdl-35042802
ABSTRACT
A global international initiative, such as the Earth BioGenome Project (EBP), requires both agreement and coordination on standards to ensure that the collective effort generates rapid progress toward its goals. To this end, the EBP initiated five technical standards committees comprising volunteer members from the global genomics scientific community Sample Collection and Processing, Sequencing and Assembly, Annotation, Analysis, and IT and Informatics. The current versions of the resulting standards documents are available on the EBP website, with the recognition that opportunities, technologies, and challenges may improve or change in the future, requiring flexibility for the EBP to meet its goals. Here, we describe some highlights from the proposed standards, and areas where additional challenges will need to be met.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Secuencia de Bases / Genómica / Eucariontes Límite: Animals / Humans Idioma: En Revista: Proc Natl Acad Sci U S A Año: 2022 Tipo del documento: Article País de afiliación: Reino Unido
Texto completo
Imprimir
XML
PubMed Links
Buscar en Google

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Secuencia de Bases / Genómica / Eucariontes Límite: Animals / Humans Idioma: En Revista: Proc Natl Acad Sci U S A Año: 2022 Tipo del documento: Article País de afiliación: Reino Unido