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SurvMaximin: Robust federated approach to transporting survival risk prediction models.
Wang, Xuan; Zhang, Harrison G; Xiong, Xin; Hong, Chuan; Weber, Griffin M; Brat, Gabriel A; Bonzel, Clara-Lea; Luo, Yuan; Duan, Rui; Palmer, Nathan P; Hutch, Meghan R; Gutiérrez-Sacristán, Alba; Bellazzi, Riccardo; Chiovato, Luca; Cho, Kelly; Dagliati, Arianna; Estiri, Hossein; García-Barrio, Noelia; Griffier, Romain; Hanauer, David A; Ho, Yuk-Lam; Holmes, John H; Keller, Mark S; Klann MEng, Jeffrey G; L'Yi, Sehi; Lozano-Zahonero, Sara; Maidlow, Sarah E; Makoudjou, Adeline; Malovini, Alberto; Moal, Bertrand; Moore, Jason H; Morris, Michele; Mowery, Danielle L; Murphy, Shawn N; Neuraz, Antoine; Yuan Ngiam, Kee; Omenn, Gilbert S; Patel, Lav P; Pedrera-Jiménez, Miguel; Prunotto, Andrea; Jebathilagam Samayamuthu, Malarkodi; Sanz Vidorreta, Fernando J; Schriver, Emily R; Schubert, Petra; Serrano-Balazote, Pablo; South, Andrew M; Tan, Amelia L M; Tan, Byorn W L; Tibollo, Valentina; Tippmann, Patric.
Afiliación
  • Wang X; Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
  • Zhang HG; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Xiong X; Department of Biostatistics, Harvard T. H. Chan School of Public Health, Boston, MA, USA.
  • Hong C; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Weber GM; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Brat GA; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Bonzel CL; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Luo Y; Department of Preventive Medicine Northwestern University, Chicago, IL, USA.
  • Duan R; Department of Biostatistics, Harvard University, Boston, MA, USA.
  • Palmer NP; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Hutch MR; Department of Preventive Medicine Northwestern University, Chicago, IL, USA.
  • Gutiérrez-Sacristán A; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Bellazzi R; Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy.
  • Chiovato L; Unit of Internal Medicine and Endocrinology, Istituti Clinici Scientifici Maugeri SpA SB IRCCS, Pavia, Italy.
  • Cho K; Population Health and Data Science, VA Boston Healthcare System, Boston, MA, USA; Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA, USA.
  • Dagliati A; Department of Electrical, Computer and Biomedical Engineering, University of Pavia, Pavia, Italy.
  • Estiri H; Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.
  • García-Barrio N; Health Informatics, Hospital Universitario 12 de Octubre, Madrid, Spain.
  • Griffier R; IAM unit, Bordeaux University Hospital, Bordeaux, France; INSERM Bordeaux Population Health ERIAS TEAM, ERIAS - Inserm U1219 BPH, Bordeaux, France.
  • Hanauer DA; Department of Learning Health Sciences, University of Michigan, Ann Arbor, MI, USA.
  • Ho YL; Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA, USA.
  • Holmes JH; Department of Biostatistics, Epidemiology, and Informatics University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
  • Keller MS; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Klann MEng JG; Department of Medicine, Massachusetts General Hospital, Boston, MA, USA.
  • L'Yi S; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Lozano-Zahonero S; Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.
  • Maidlow SE; Michigan Institute for Clinical and Health Research (MICHR) Informatics, University of Michigan, Ann Arbor, MI, USA.
  • Makoudjou A; Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.
  • Malovini A; Laboratory of Informatics and Systems Engineering for Clinical Research, Istituti Clinici Scientifici Maugeri SpA SB IRCCS, Pavia, Italy.
  • Moal B; IAM unit, Bordeaux University Hospital, Bordeaux, France.
  • Moore JH; Department of Computational Biomedicine, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
  • Morris M; Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.
  • Mowery DL; Department of Biostatistics, Epidemiology, and Informatics University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
  • Murphy SN; Department of Neurology, Massachusetts General Hospital, Boston, MA, USA.
  • Neuraz A; Department of biomedical informatics, Hôpital Necker-Enfants Malade, Assistance Publique Hôpitaux de Paris (APHP), University of Paris, Paris, France.
  • Yuan Ngiam K; Department of Biomedical informatics, WiSDM, National University Health Systems, Singapore.
  • Omenn GS; Depts of Computational Medicine & Bioinformatics, Internal Medicine, Human Genetics, Public Health University of Michigan, Ann Arbor, MI, USA.
  • Patel LP; Department of Internal Medicine, Division of Medical Informatics, University Of Kansas Medical Center.
  • Pedrera-Jiménez M; Health Informatics, Hospital Universitario 12 de Octubre, Madrid, Spain.
  • Prunotto A; Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.
  • Jebathilagam Samayamuthu M; Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA.
  • Sanz Vidorreta FJ; Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.
  • Schriver ER; Data Analytics Center, University of Pennsylvania Health System, Philadelphia, PA, USA.
  • Schubert P; Massachusetts Veterans Epidemiology Research and Information Center (MAVERIC), VA Boston Healthcare System, Boston, MA, USA.
  • Serrano-Balazote P; Health Informatics, Hospital Universitario 12 de Octubre, Madrid, Spain.
  • South AM; Department of Pediatrics-Section of Nephrology, Brenner Children's, Wake Forest School of Medicine, Winston Salem, NC, USA.
  • Tan ALM; Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.
  • Tan BWL; Department of Medicine, National University Hospital, Singapore.
  • Tibollo V; Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.
  • Tippmann P; Institute of Medical Biometry and Statistics, Faculty of Medicine and Medical Center, University of Freiburg, Freiburg, Germany.
J Biomed Inform ; 134: 104176, 2022 10.
Article en En | MEDLINE | ID: mdl-36007785
ABSTRACT

OBJECTIVE:

For multi-center heterogeneous Real-World Data (RWD) with time-to-event outcomes and high-dimensional features, we propose the SurvMaximin algorithm to estimate Cox model feature coefficients for a target population by borrowing summary information from a set of health care centers without sharing patient-level information. MATERIALS AND

METHODS:

For each of the centers from which we want to borrow information to improve the prediction performance for the target population, a penalized Cox model is fitted to estimate feature coefficients for the center. Using estimated feature coefficients and the covariance matrix of the target population, we then obtain a SurvMaximin estimated set of feature coefficients for the target population. The target population can be an entire cohort comprised of all centers, corresponding to federated learning, or a single center, corresponding to transfer learning.

RESULTS:

Simulation studies and a real-world international electronic health records application study, with 15 participating health care centers across three countries (France, Germany, and the U.S.), show that the proposed SurvMaximin algorithm achieves comparable or higher accuracy compared with the estimator using only the information of the target site and other existing methods. The SurvMaximin estimator is robust to variations in sample sizes and estimated feature coefficients between centers, which amounts to significantly improved estimates for target sites with fewer observations.

CONCLUSIONS:

The SurvMaximin method is well suited for both federated and transfer learning in the high-dimensional survival analysis setting. SurvMaximin only requires a one-time summary information exchange from participating centers. Estimated regression vectors can be very heterogeneous. SurvMaximin provides robust Cox feature coefficient estimates without outcome information in the target population and is privacy-preserving.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Algoritmos / Registros Electrónicos de Salud Tipo de estudio: Clinical_trials / Etiology_studies / Prognostic_studies / Risk_factors_studies Límite: Humans Idioma: En Revista: J Biomed Inform Asunto de la revista: INFORMATICA MEDICA Año: 2022 Tipo del documento: Article País de afiliación: Estados Unidos

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Algoritmos / Registros Electrónicos de Salud Tipo de estudio: Clinical_trials / Etiology_studies / Prognostic_studies / Risk_factors_studies Límite: Humans Idioma: En Revista: J Biomed Inform Asunto de la revista: INFORMATICA MEDICA Año: 2022 Tipo del documento: Article País de afiliación: Estados Unidos