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Beyond Boolean: Ternary networks and dynamics.
Yao, Yu-Xiang; Dong, Jia-Qi; Zhu, Jie-Ying; Huang, Liang; Pei, Duan-Qing; Lai, Ying-Cheng.
Afiliación
  • Yao YX; Lanzhou Center for Theoretical Physics and Key Laboratory of Theoretical Physics of Gansu Province, Lanzhou University, Lanzhou, Gansu 730000, China.
  • Dong JQ; Lanzhou Center for Theoretical Physics and Key Laboratory of Theoretical Physics of Gansu Province, Lanzhou University, Lanzhou, Gansu 730000, China.
  • Zhu JY; South China Institute for Stem Cell Biology and Regenerative Medicine, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, Guangdong 510530, China.
  • Huang L; Lanzhou Center for Theoretical Physics and Key Laboratory of Theoretical Physics of Gansu Province, Lanzhou University, Lanzhou, Gansu 730000, China.
  • Pei DQ; Laboratory of Cell Fate Control, School of Life Sciences, Westlake University, Hangzhou, Zhejiang 310024, China.
  • Lai YC; School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, Arizona 85287, USA.
Chaos ; 32(8): 083117, 2022 Aug.
Article en En | MEDLINE | ID: mdl-36049930
Boolean networks introduced by Kauffman, originally intended as a prototypical model for gaining insights into gene regulatory dynamics, have become a paradigm for understanding a variety of complex systems described by binary state variables. However, there are situations, e.g., in biology, where a binary state description of the underlying dynamical system is inadequate. We propose random ternary networks and investigate the general dynamical properties associated with the ternary discretization of the variables. We find that the ternary dynamics can be either ordered or disordered with a positive Lyapunov exponent, and the boundary between them in the parameter space can be determined analytically. A dynamical event that is key to determining the boundary is the emergence of an additional fixed point for which we provide numerical verification. We also find that the nodes playing a pivotal role in shaping the system dynamics have characteristically distinct behaviors in different regions of the parameter space, and, remarkably, the boundary between these regions coincides with that separating the ordered and disordered dynamics. Overall, our framework of ternary networks significantly broadens the classical Boolean paradigm by enabling a quantitative description of richer and more complex dynamical behaviors.
Asunto(s)

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Regulación de la Expresión Génica / Redes Reguladoras de Genes Tipo de estudio: Prognostic_studies Idioma: En Revista: Chaos Asunto de la revista: CIENCIA Año: 2022 Tipo del documento: Article País de afiliación: China

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Asunto principal: Regulación de la Expresión Génica / Redes Reguladoras de Genes Tipo de estudio: Prognostic_studies Idioma: En Revista: Chaos Asunto de la revista: CIENCIA Año: 2022 Tipo del documento: Article País de afiliación: China