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Subpar reporting of pre-analytical variables in RNA-focused blood plasma studies.
Van Der Schueren, Céleste; Decruyenaere, Philippe; Avila Cobos, Francisco; Bult, Johanna; Deleu, Jill; Dipalo, Laudonia Lidia; Helsmoortel, Hetty Hilde; Hulstaert, Eva; Morlion, Annelien; Ramos Varas, Elena; Schoofs, Kathleen; Trypsteen, Wim; Vanden Eynde, Eveline; Van Droogenbroeck, Hanne; Verniers, Kimberly; Vandesompele, Jo; Decock, Anneleen.
Afiliación
  • Van Der Schueren C; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Decruyenaere P; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Avila Cobos F; Department of Hematology, Ghent University Hospital, Belgium.
  • Bult J; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Deleu J; OncoRNALab, Cancer Research Institute Ghent (CRIG), Belgium.
  • Dipalo LL; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Helsmoortel HH; Department of Hematology, University Medical Center Groningen, The Netherlands.
  • Hulstaert E; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Morlion A; OncoRNALab, Cancer Research Institute Ghent (CRIG), Belgium.
  • Ramos Varas E; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Schoofs K; OncoRNALab, Cancer Research Institute Ghent (CRIG), Belgium.
  • Trypsteen W; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Vanden Eynde E; OncoRNALab, Cancer Research Institute Ghent (CRIG), Belgium.
  • Van Droogenbroeck H; Department of Biomolecular Medicine, Ghent University, Belgium.
  • Verniers K; OncoRNALab, Cancer Research Institute Ghent (CRIG), Belgium.
  • Vandesompele J; Department of Dermatology, AZ Sint-Blasius, Belgium.
  • Decock A; Department of Biomolecular Medicine, Ghent University, Belgium.
Mol Oncol ; 2024 Apr 02.
Article en En | MEDLINE | ID: mdl-38564603
ABSTRACT
Extracellular RNA (cell-free RNA; exRNA) from blood-derived liquid biopsies is an appealing, minimally invasive source of disease biomarkers. As pre-analytical variables strongly influence exRNA measurements, their reporting is essential for meaningful interpretation and replication of results. The aim of this review was to chart to what extent pre-analytical variables are documented, to pinpoint shortcomings and to improve future reporting. In total, 200 blood plasma exRNA studies published in 2018 or 2023 were reviewed for annotation of 22 variables associated with blood collection, plasma preparation, and RNA purification. Our results show that pre-analytical variables are poorly documented, with only three out of 22 variables described in over half of the publications. The percentage of variables reported ranged from 4.6% to 54.6% (mean 24.84%) in 2023 and from 4.6% to 57.1% (mean 28.60%) in 2018. Recommendations and guidelines (i.e., BRISQ, ASCO-CAP, BloodPAC, PPMPT, and CEN standards) have currently not resulted in improved reporting. In conclusion, our results highlight the lack of reporting pre-analytical variables in exRNA studies and advocate for a consistent use of available standards, endorsed by funders and journals.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Idioma: En Revista: Mol Oncol Asunto de la revista: BIOLOGIA MOLECULAR / NEOPLASIAS Año: 2024 Tipo del documento: Article País de afiliación: Bélgica

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Idioma: En Revista: Mol Oncol Asunto de la revista: BIOLOGIA MOLECULAR / NEOPLASIAS Año: 2024 Tipo del documento: Article País de afiliación: Bélgica