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Role of heterogeneity: National scale data-driven agent-based modeling for the US COVID-19 Scenario Modeling Hub.
Chen, Jiangzhuo; Bhattacharya, Parantapa; Hoops, Stefan; Machi, Dustin; Adiga, Abhijin; Mortveit, Henning; Venkatramanan, Srinivasan; Lewis, Bryan; Marathe, Madhav.
Afiliación
  • Chen J; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA. Electronic address: chenj@virginia.edu.
  • Bhattacharya P; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.
  • Hoops S; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.
  • Machi D; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.
  • Adiga A; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.
  • Mortveit H; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA; Department of Engineering Systems and Environment, University of Virginia, Charlottesville, VA, USA.
  • Venkatramanan S; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.
  • Lewis B; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA.
  • Marathe M; Biocomplexity Institute, University of Virginia, Charlottesville, VA, USA; Department of Computer Science, University of Virginia, Charlottesville, VA, USA. Electronic address: marathe@virginia.edu.
Epidemics ; 48: 100779, 2024 Jun 27.
Article en En | MEDLINE | ID: mdl-39024889
ABSTRACT
UVA-EpiHiper is a national scale agent-based model to support the US COVID-19 Scenario Modeling Hub (SMH). UVA-EpiHiper uses a detailed representation of the underlying social contact network along with data measured during the course of the pandemic to initialize and calibrate the model. In this paper, we study the role of heterogeneity on model complexity and resulting epidemic dynamics using UVA-EpiHiper. We discuss various sources of heterogeneity that we encounter in the use of UVA-EpiHiper to support modeling and analysis of epidemic dynamics under various scenarios. We also discuss how this affects model complexity and computational complexity of the corresponding simulations. Using round 13 of the SMH as an example, we discuss how UVA-EpiHiper was initialized and calibrated. We then discuss how the detailed output produced by UVA-EpiHiper can be analyzed to obtain interesting insights. We find that despite the complexity in the model, the software, and the computation incurred to an agent-based model in scenario modeling, it is capable of capturing various heterogeneities of real-world systems, especially those in networks and behaviors, and enables analyzing heterogeneities in epidemiological outcomes between different demographic, geographic, and social cohorts. In applying UVA-EpiHiper to round 13 scenario modeling, we find that disease outcomes are different between and within states, and between demographic groups, which can be attributed to heterogeneities in population demographics, network structures, and initial immunity.
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Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Idioma: En Revista: Epidemics Año: 2024 Tipo del documento: Article

Texto completo: 1 Colección: 01-internacional Banco de datos: MEDLINE Idioma: En Revista: Epidemics Año: 2024 Tipo del documento: Article