Creating reusable tools from scripts: the Galaxy Tool Factory.
Bioinformatics
; 28(23): 3139-40, 2012 Dec 01.
Article
em En
| MEDLINE
| ID: mdl-23024011
ABSTRACT
MOTIVATION Galaxy is a software application supporting high-throughput biology analyses and work flows, available as a free on-line service or as source code for local deployment. New tools can be written to extend Galaxy, and these can be shared using public Galaxy Tool Shed (GTS) repositories, but converting even simple scripts into tools requires effort from a skilled developer. RESULTS:
The Tool Factory is a novel Galaxy tool that automates the generation of all code needed to execute user-supplied scripts, and wraps them into new Galaxy tools for upload to a GTS, ready for review and installation through the Galaxy administrative interface. AVAILABILITY AND IMPLEMENTATION The Galaxy administrative interface supports automated installation from the main GTS. Source code and support are available at the project website, https//bitbucket.org/fubar/galaxytoolfactory. The Tool Factory is implemented as an installable Galaxy tool. CONTACT ross.lazarus@channing.harvard.edu.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Software
/
Processamento Eletrônico de Dados
/
Biologia Computacional
/
Sequenciamento de Nucleotídeos em Larga Escala
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2012
Tipo de documento:
Article
País de afiliação:
Austrália