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Observing Biosynthetic Activity Utilizing Next Generation Sequencing and the DNA Linked Enzyme Coupled Assay.
Raad, Markus de; Modavi, Cyrus; Sukovich, David J; Anderson, J Christopher.
Afiliação
  • Raad M; Department of Biological Engineering, Synthetic Biology Institute, University of California, Berkeley , Berkeley, California 94704, United States.
  • Modavi C; Department of Biological Engineering, Synthetic Biology Institute, University of California, Berkeley , Berkeley, California 94704, United States.
  • Sukovich DJ; Department of Biological Engineering, Synthetic Biology Institute, University of California, Berkeley , Berkeley, California 94704, United States.
  • Anderson JC; Department of Biological Engineering, Synthetic Biology Institute, University of California, Berkeley , Berkeley, California 94704, United States.
ACS Chem Biol ; 12(1): 191-199, 2017 01 20.
Article em En | MEDLINE | ID: mdl-28103681
Currently, the identification of new genes drastically outpaces current experimental methods for determining their enzymatic function. This disparity necessitates the development of high-throughput techniques that operate with the same scalability as modern gene synthesis and sequencing technologies. In this paper, we demonstrate the versatility of the recently reported DNA-Linked Enzyme-Coupled Assay (DLEnCA) and its ability to support high-throughput data acquisition through next-generation sequencing (NGS). Utilizing methyltransferases, we highlight DLEnCA's ability to rapidly profile an enzyme's substrate specificity, determine relative enzyme kinetics, detect biosynthetic formation of a target molecule, and its potential to benefit from the scales and standardization afforded by NGS. This improved methodology minimizes the effort in acquiring biosynthetic knowledge by tying biochemical techniques to the rapidly evolving abilities in sequencing and synthesizing DNA.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Proteínas de Arabidopsis / Sequenciamento de Nucleotídeos em Larga Escala / Metiltransferases Idioma: En Revista: ACS Chem Biol Ano de publicação: 2017 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Proteínas de Arabidopsis / Sequenciamento de Nucleotídeos em Larga Escala / Metiltransferases Idioma: En Revista: ACS Chem Biol Ano de publicação: 2017 Tipo de documento: Article País de afiliação: Estados Unidos