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Bayesian analysis of isothermal titration calorimetry for binding thermodynamics.
Nguyen, Trung Hai; Rustenburg, Ariën S; Krimmer, Stefan G; Zhang, Hexi; Clark, John D; Novick, Paul A; Branson, Kim; Pande, Vijay S; Chodera, John D; Minh, David D L.
Afiliação
  • Nguyen TH; Department of Chemistry, Illinois Institute of Technology, Chicago, IL, United States of America.
  • Rustenburg AS; Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, United States of America.
  • Krimmer SG; Graduate Program in Physiology, Biophysics, and Systems Biology, Weill Cornell Medical College, New York, NY, United States of America.
  • Zhang H; Department of Pharmaceutical Chemistry, University of Marburg, Marbacher Weg 6, Marburg, Germany.
  • Clark JD; Department of Chemistry, Illinois Institute of Technology, Chicago, IL, United States of America.
  • Novick PA; Department of Chemistry, Illinois Institute of Technology, Chicago, IL, United States of America.
  • Branson K; Department of Chemistry, Stanford University, Stanford, CA, United States of America.
  • Pande VS; Department of Chemistry, Stanford University, Stanford, CA, United States of America.
  • Chodera JD; Department of Chemistry, Stanford University, Stanford, CA, United States of America.
  • Minh DDL; Computational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, United States of America.
PLoS One ; 13(9): e0203224, 2018.
Article em En | MEDLINE | ID: mdl-30212471
ABSTRACT
Isothermal titration calorimetry (ITC) is the only technique able to determine both the enthalpy and entropy of noncovalent association in a single experiment. The standard data analysis method based on nonlinear regression, however, provides unrealistically small uncertainty estimates due to its neglect of dominant sources of error. Here, we present a Bayesian framework for sampling from the posterior distribution of all thermodynamic parameters and other quantities of interest from one or more ITC experiments, allowing uncertainties and correlations to be quantitatively assessed. For a series of ITC measurements on metalchelator and proteinligand systems, the Bayesian approach yields uncertainties which represent the variability from experiment to experiment more accurately than the standard data analysis. In some datasets, the median enthalpy of binding is shifted by as much as 1.5 kcal/mol. A Python implementation suitable for analysis of data generated by MicroCal instruments (and adaptable to other calorimeters) is freely available online.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Calorimetria Tipo de estudo: Health_economic_evaluation / Prognostic_studies Idioma: En Revista: PLoS One Assunto da revista: CIENCIA / MEDICINA Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Calorimetria Tipo de estudo: Health_economic_evaluation / Prognostic_studies Idioma: En Revista: PLoS One Assunto da revista: CIENCIA / MEDICINA Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Estados Unidos