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Draft Genome of Burkholderia cenocepacia TAtl-371, a Strain from the Burkholderia cepacia Complex Retains Antagonism in Different Carbon and Nitrogen Sources.
Rojas-Rojas, Fernando Uriel; Sánchez-López, David; Tapia-García, Erika Yanet; Arroyo-Herrera, Ivan; Maymon, Maskit; Humm, Ethan; Huntemann, Marcel; Clum, Alicia; Pillay, Manoj; Palaniappan, Krishnaveni; Varghese, Neha; Mikhailova, Natalia; Stamatis, Dimitrios; Reddy, T B K; Ivanova, Natalia; Kyrpides, Nikos; Woyke, Tanja; Shapiro, Nicole; Hirsch, Ann M; Ibarra, J Antonio; Estrada-de Los Santos, Paulina.
Afiliação
  • Rojas-Rojas FU; Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
  • Sánchez-López D; Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
  • Tapia-García EY; Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
  • Arroyo-Herrera I; Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
  • Maymon M; Department of Molecular, Cell and Developmental Biology, University of California-Los Angeles, Los Angeles, CA, 90095, USA.
  • Humm E; Department of Molecular, Cell and Developmental Biology, University of California-Los Angeles, Los Angeles, CA, 90095, USA.
  • Huntemann M; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Clum A; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Pillay M; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Palaniappan K; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Varghese N; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Mikhailova N; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Stamatis D; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Reddy TBK; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Ivanova N; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Kyrpides N; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Woyke T; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Shapiro N; DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, 94598, USA.
  • Hirsch AM; Department of Molecular, Cell and Developmental Biology, University of California-Los Angeles, Los Angeles, CA, 90095, USA.
  • Ibarra JA; Molecular Biology Institute, University of California-Los Angeles, Los Angeles, CA, 90095, USA.
  • Estrada-de Los Santos P; Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas, Prol. Carpio y Plan de Ayala s/n. Col. Santo Tomás, Del. Miguel Hidalgo, C.P. 11340, Ciudad de México, Mexico.
Curr Microbiol ; 76(5): 566-574, 2019 May.
Article em En | MEDLINE | ID: mdl-30820638
ABSTRACT
Burkholderia cenocepacia TAtl-371 was isolated from the rhizosphere of a tomato plant growing in Atlatlahucan, Morelos, Mexico. This strain exhibited a broad antimicrobial spectrum against bacteria, yeast, and fungi. Here, we report and describe the improved, high-quality permanent draft genome of B. cenocepacia TAtl-371, which was sequenced using a combination of PacBio RS and PacBio RS II sequencing methods. The 7,496,106 bp genome of the TAtl-371 strain is arranged in three scaffolds, contains 6722 protein-coding genes, and 99 RNA only-encoding genes. Genome analysis revealed genes related to biosynthesis of antimicrobials such as non-ribosomal peptides, siderophores, chitinases, and bacteriocins. Moreover, analysis of bacterial growth on different carbon and nitrogen sources shows that the strain retains its antimicrobial ability.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Carbono / Genoma Bacteriano / Complexo Burkholderia cepacia / Burkholderia cenocepacia / Antibiose / Nitrogênio País/Região como assunto: Mexico Idioma: En Revista: Curr Microbiol Ano de publicação: 2019 Tipo de documento: Article País de afiliação: México
Texto completo
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Carbono / Genoma Bacteriano / Complexo Burkholderia cepacia / Burkholderia cenocepacia / Antibiose / Nitrogênio País/Região como assunto: Mexico Idioma: En Revista: Curr Microbiol Ano de publicação: 2019 Tipo de documento: Article País de afiliação: México