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Project Score database: a resource for investigating cancer cell dependencies and prioritizing therapeutic targets.
Dwane, Lisa; Behan, Fiona M; Gonçalves, Emanuel; Lightfoot, Howard; Yang, Wanjuan; van der Meer, Dieudonne; Shepherd, Rebecca; Pignatelli, Miguel; Iorio, Francesco; Garnett, Mathew J.
Afiliação
  • Dwane L; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
  • Behan FM; Open Targets, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Gonçalves E; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
  • Lightfoot H; Open Targets, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
  • Yang W; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
  • van der Meer D; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
  • Shepherd R; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
  • Pignatelli M; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
  • Iorio F; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
  • Garnett MJ; Wellcome Sanger Institute, Hinxton, Cambridge CB10 1SA, UK.
Nucleic Acids Res ; 49(D1): D1365-D1372, 2021 01 08.
Article em En | MEDLINE | ID: mdl-33068406
CRISPR genetic screens in cancer cell models are a powerful tool to elucidate oncogenic mechanisms and to identify promising therapeutic targets. The Project Score database (https://score.depmap.sanger.ac.uk/) uses genome-wide CRISPR-Cas9 dropout screening data in hundreds of highly annotated cancer cell models to identify genes required for cell fitness and prioritize novel oncology targets. The Project Score database currently allows users to investigate the fitness effect of 18 009 genes tested across 323 cancer cell models. Through interactive interfaces, users can investigate data by selecting a specific gene, cancer cell model or tissue type, as well as browsing all gene fitness scores. Additionally, users can identify and rank candidate drug targets based on an established oncology target prioritization pipeline, incorporating genetic biomarkers and clinical datasets for each target, and including suitability for drug development based on pharmaceutical tractability. Data are freely available and downloadable. To enhance analyses, links to other key resources including Open Targets, COSMIC, the Cell Model Passports, UniProt and the Genomics of Drug Sensitivity in Cancer are provided. The Project Score database is a valuable new tool for investigating genetic dependencies in cancer cells and the identification of candidate oncology targets.
Assuntos

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Biomarcadores Tumorais / Regulação Neoplásica da Expressão Gênica / Genoma Humano / Bases de Dados Factuais / Neoplasias Tipo de estudo: Prognostic_studies Limite: Humans Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Software / Biomarcadores Tumorais / Regulação Neoplásica da Expressão Gênica / Genoma Humano / Bases de Dados Factuais / Neoplasias Tipo de estudo: Prognostic_studies Limite: Humans Idioma: En Revista: Nucleic Acids Res Ano de publicação: 2021 Tipo de documento: Article