CorGAT: a tool for the functional annotation of SARS-CoV-2 genomes.
Bioinformatics
; 36(22-23): 5522-5523, 2021 Apr 01.
Article
em En
| MEDLINE
| ID: mdl-33346830
ABSTRACT
SUMMARY:
While over 200 000 genomic sequences are currently available through dedicated repositories, ad hoc methods for the functional annotation of SARS-CoV-2 genomes do not harness all currently available resources for the annotation of functionally relevant genomic sites. Here, we present CorGAT, a novel tool for the functional annotation of SARS-CoV-2 genomic variants. By comparisons with other state of the art methods we demonstrate that, by providing a more comprehensive and rich annotation, our method can facilitate the identification of evolutionary patterns in the genome of SARS-CoV-2. AVAILABILITYAND IMPLEMENTATION Galaxy.http//corgat.cloud.ba.infn.it/galaxy; software https//github.com/matteo14c/CorGAT/tree/Revision_V1; docker https//hub.docker.com/r/laniakeacloud/galaxy_corgat. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2021
Tipo de documento:
Article
País de afiliação:
Itália