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Comprehensive Draft Genome Analyses of Three Rockfishes (Scorpaeniformes, Sebastiscus) via Genome Survey Sequencing.
Jia, Chenghao; Yang, Tianyan; Yanagimoto, Takashi; Gao, Tianxiang.
Afiliação
  • Jia C; State Key Laboratory of Marine Resource Utilization in South China Sea, College of Ecology and Environment, Hainan University, Haikou 570228, China.
  • Yang T; Fishery College, Zhejiang Ocean University, Zhoushan 316022, China.
  • Yanagimoto T; Fisheries Resources Institute, Japan Fisheries Research and Education Agency, Kanagawa 236-8648, Japan.
  • Gao T; Fishery College, Zhejiang Ocean University, Zhoushan 316022, China.
Curr Issues Mol Biol ; 43(3): 2048-2058, 2021 Nov 18.
Article em En | MEDLINE | ID: mdl-34889891
Sebastiscus species, marine rockfishes, are of essential economic value. However, the genomic data of this genus is lacking and incomplete. Here, whole genome sequencing of all species of Sebastiscus was conducted to provide fundamental genomic information. The genome sizes were estimated to be 802.49 Mb (S. albofasciatus), 786.79 Mb (S. tertius), and 776.00 Mb (S. marmoratus) by using k-mer analyses. The draft genome sequences were initially assembled, and genome-wide microsatellite motifs were identified. The heterozygosity, repeat ratios, and numbers of microsatellite motifs all suggested possibly that S. tertius is more closely related to S. albofasciatus than S. marmoratus at the genetic level. Moreover, the complete mitochondrial genome sequences were assembled from the whole genome data and the phylogenetic analyses genetically supported the validation of Sebastiscus species. This study provides an important genome resource for further studies of Sebastiscus species.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Perciformes / Genoma / Análise de Sequência de DNA / Genômica / Sequenciamento Completo do Genoma Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Revista: Curr Issues Mol Biol Assunto da revista: BIOLOGIA MOLECULAR Ano de publicação: 2021 Tipo de documento: Article País de afiliação: China

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Perciformes / Genoma / Análise de Sequência de DNA / Genômica / Sequenciamento Completo do Genoma Tipo de estudo: Prognostic_studies Limite: Animals Idioma: En Revista: Curr Issues Mol Biol Assunto da revista: BIOLOGIA MOLECULAR Ano de publicação: 2021 Tipo de documento: Article País de afiliação: China