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Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements.
Baranasic, Damir; Hörtenhuber, Matthias; Balwierz, Piotr J; Zehnder, Tobias; Mukarram, Abdul Kadir; Nepal, Chirag; Várnai, Csilla; Hadzhiev, Yavor; Jimenez-Gonzalez, Ada; Li, Nan; Wragg, Joseph; D'Orazio, Fabio M; Relic, Dorde; Pachkov, Mikhail; Díaz, Noelia; Hernández-Rodríguez, Benjamín; Chen, Zelin; Stoiber, Marcus; Dong, Michaël; Stevens, Irene; Ross, Samuel E; Eagle, Anne; Martin, Ryan; Obasaju, Oluwapelumi; Rastegar, Sepand; McGarvey, Alison C; Kopp, Wolfgang; Chambers, Emily; Wang, Dennis; Kim, Hyejeong R; Acemel, Rafael D; Naranjo, Silvia; Lapinski, Maciej; Chong, Vanessa; Mathavan, Sinnakaruppan; Peers, Bernard; Sauka-Spengler, Tatjana; Vingron, Martin; Carninci, Piero; Ohler, Uwe; Lacadie, Scott Allen; Burgess, Shawn M; Winata, Cecilia; van Eeden, Freek; Vaquerizas, Juan M; Gómez-Skarmeta, José Luis; Onichtchouk, Daria; Brown, Ben James; Bogdanovic, Ozren; van Nimwegen, Erik.
Afiliação
  • Baranasic D; MRC London Institute of Medical Sciences, London, UK.
  • Hörtenhuber M; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK.
  • Balwierz PJ; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden.
  • Zehnder T; MRC London Institute of Medical Sciences, London, UK.
  • Mukarram AK; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK.
  • Nepal C; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Várnai C; MRC London Institute of Medical Sciences, London, UK.
  • Hadzhiev Y; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, Hammersmith Hospital Campus, London, UK.
  • Jimenez-Gonzalez A; Max Planck Institute for Molecular Genetics, Department of Computational Molecular Biology, Berlin, Germany.
  • Li N; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden.
  • Wragg J; Biotech Research and Innovation Centre (BRIC), Department of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
  • D'Orazio FM; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Relic D; Centre for Computational Biology, University of Birmingham, Birmingham, UK.
  • Pachkov M; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Díaz N; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Hernández-Rodríguez B; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Chen Z; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Stoiber M; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Dong M; Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Basel, Switzerland.
  • Stevens I; Biozentrum, University of Basel and Swiss Institute of Bioinformatics, Basel, Switzerland.
  • Ross SE; Max Planck Institute for Molecular Biomedicine, Muenster, Germany.
  • Eagle A; Institute of Marine Sciences, Barcelona, Spain.
  • Martin R; Max Planck Institute for Molecular Biomedicine, Muenster, Germany.
  • Obasaju O; Translational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD, USA.
  • Rastegar S; Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China.
  • McGarvey AC; CAS Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China.
  • Kopp W; Environmental Genomics & Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
  • Chambers E; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden.
  • Wang D; Department of Biosciences and Nutrition, Karolinska Institutet, NEO, Huddinge, Sweden.
  • Kim HR; Genomics and Epigenetics Division, Garvan Institute of Medical Research, Sydney, New South Wales, Australia.
  • Acemel RD; Institute of Neuroscience, University of Oregon, Eugene, OR, USA.
  • Naranjo S; Institute of Neuroscience, University of Oregon, Eugene, OR, USA.
  • Lapinski M; Institute of Cancer and Genomic Sciences, Birmingham Centre for Genome Biology, College of Medical and Dental Sciences, University of Birmingham, Birmingham, UK.
  • Chong V; Institute of Biological and Chemical Systems - Biological Information Processing (IBCS-BIP), Karlsruhe Institute of Technology, Karlsruhe, Germany.
  • Mathavan S; Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany.
  • Peers B; Max-Delbrück-Center for Molecular Medicine in the Helmholtz Association (MDC), Berlin Institute for Medical Systems Biology (BIMSB), Berlin, Germany.
  • Sauka-Spengler T; Sheffield Bioinformatics Core, Sheffield Institute of Translational Neuroscience, University of Sheffield, Sheffield, UK.
  • Vingron M; Sheffield Bioinformatics Core, Sheffield Institute of Translational Neuroscience, University of Sheffield, Sheffield, UK.
  • Carninci P; Singapore Institute for Clinical Sciences, Singapore, Singapore.
  • Ohler U; Bateson Centre/Biomedical Science, University of Sheffield, Sheffield, UK.
  • Lacadie SA; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, Seville, Spain.
  • Burgess SM; Epigenetics and Sex Development Group, Berlin Institute for Medical Systems Biology, Max-Delbrück Center for Molecular Medicine, Berlin, Germany.
  • Winata C; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide-Junta de Andalucía, Seville, Spain.
  • van Eeden F; International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.
  • Vaquerizas JM; MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
  • Gómez-Skarmeta JL; Vision Research Foundation, Sankara Nethralayas, Chennai, India.
  • Onichtchouk D; Laboratory of Zebrafish Development and Disease Models (ZDDM), GIGA-R, SART TILMAN, University of Liège, Liège, Belgium.
  • Brown BJ; MRC Weatherall Institute of Molecular Medicine, Radcliffe Department of Medicine, University of Oxford, Oxford, UK.
  • Bogdanovic O; Max Planck Institute for Molecular Genetics, Department of Computational Molecular Biology, Berlin, Germany.
  • van Nimwegen E; Laboratory for Transcriptome Technology, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Nat Genet ; 54(7): 1037-1050, 2022 07.
Article em En | MEDLINE | ID: mdl-35789323
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Peixe-Zebra / Sequências Reguladoras de Ácido Nucleico / Genoma / Regulação da Expressão Gênica no Desenvolvimento / Genômica / Proteínas de Peixe-Zebra / Bases de Dados Genéticas Tipo de estudo: Prognostic_studies Limite: Animals / Humans Idioma: En Revista: Nat Genet Assunto da revista: GENETICA MEDICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Reino Unido
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Peixe-Zebra / Sequências Reguladoras de Ácido Nucleico / Genoma / Regulação da Expressão Gênica no Desenvolvimento / Genômica / Proteínas de Peixe-Zebra / Bases de Dados Genéticas Tipo de estudo: Prognostic_studies Limite: Animals / Humans Idioma: En Revista: Nat Genet Assunto da revista: GENETICA MEDICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Reino Unido