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BESFA: bioinformatics based evolutionary, structural & functional analysis of prostrate, Placenta, Ovary, Testis, and Embryo (POTE) paralogs.
Qazi, Sahar; Jit, Bimal Prasad; Das, Abhishek; Karthikeyan, Muthukumarasamy; Saxena, Amit; Ray, M D; Singh, Angel Rajan; Raza, Khalid; Jayaram, B; Sharma, Ashok.
Afiliação
  • Qazi S; Department of Biochemistry, All India Institute of Medical Sciences, Delhi 110029, India.
  • Jit BP; Department of Computer Science, Jamia Millia Islamia, New Delhi 110025, India.
  • Das A; Department of Biochemistry, All India Institute of Medical Sciences, Delhi 110029, India.
  • Karthikeyan M; Department of Biochemistry, All India Institute of Medical Sciences, Delhi 110029, India.
  • Saxena A; National Chemical Laboratory, Council of Scientific and Industrial Research (NCL-CSIR), Pune, Maharashtra, India.
  • Ray MD; Centre for Development of Advanced Computing, Pune, Maharashtra, India.
  • Singh AR; Dr. B.R.A Institute-Rotary Cancer Hospital, All India Institute of Medical Sciences, Delhi 110029, India.
  • Raza K; Dr. B.R.A Institute-Rotary Cancer Hospital, All India Institute of Medical Sciences, Delhi 110029, India.
  • Jayaram B; Department of Computer Science, Jamia Millia Islamia, New Delhi 110025, India.
  • Sharma A; Supercomputing Facility for Bioinformatics & Computational Biology, Indian Institute of Technology, Delhi, India.
Heliyon ; 8(9): e10476, 2022 Sep.
Article em En | MEDLINE | ID: mdl-36132183
The POTE family comprises 14 paralogues and is primarily expressed in Prostrate, Placenta, Ovary, Testis, Embryo (POTE), and cancerous cells. The prospective function of the POTE protein family under physiological conditions is less understood. We systematically analyzed their cellular localization and molecular docking analysis to elucidate POTE proteins' structure, function, and Adaptive Divergence. Our results suggest that group three POTE paralogs (POTEE, POTEF, POTEI, POTEJ, and POTEKP (a pseudogene)) exhibits significant variation among other members could be because of their Adaptive Divergence. Furthermore, our molecular docking studies on POTE protein revealed the highest binding affinity with NCI-approved anticancer compounds. Additionally, POTEE, POTEF, POTEI, and POTEJ were subject to an explicit molecular dynamic simulation for 50ns. MM-GBSA and other essential electrostatics were calculated that showcased that only POTEE and POTEF have absolute binding affinities with minimum energy exploitation. Thus, this study's outcomes are expected to drive cancer research to successful utilization of POTE genes family as a new biomarker, which could pave the way for the discovery of new therapies.
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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Heliyon Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Índia

Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Idioma: En Revista: Heliyon Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Índia