Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping.

Nykrynova, Marketa; Barton, Vojtech; Bezdicek, Matej; Lengerova, Martina; Skutkova, Helena

Nykrynova, Marketa; Barton, Vojtech; Bezdicek, Matej; Lengerova, Martina; Skutkova, Helena.

Afiliação

Nykrynova M; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czechia. nykrynova@vutbr.cz.
Barton V; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czechia.
Bezdicek M; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czechia.
Lengerova M; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czechia.
Skutkova H; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czechia.

BMC Genomics ; 23(Suppl 3): 445, 2022 Dec 29.

Article em En | MEDLINE | ID: mdl-36581824

Assuntos

Bactérias; Genoma; Tipagem de Sequências Multilocus/métodos; Genótipo; Bactérias/genética; Técnicas de Tipagem Bacteriana/métodos; Escherichia coli/genética

Palavras-chave

Bacterial genotyping; De novo assembly; Genome assembly; Mini-MLST; Multilocus sequence typing; Unmapped reads

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Bactérias / Genoma Tipo de estudo: Diagnostic_studies / Prognostic_studies Idioma: En Revista: BMC Genomics Assunto da revista: GENETICA Ano de publicação: 2022 Tipo de documento: Article

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