Comparison of long- and short-read metagenomic assembly for low-abundance species and resistance genes.

Yorki, Sosie; Shea, Terrance; Cuomo, Christina A; Walker, Bruce J; LaRocque, Regina C; Manson, Abigail L; Earl, Ashlee M; Worby, Colin J

Yorki, Sosie; Shea, Terrance; Cuomo, Christina A; Walker, Bruce J; LaRocque, Regina C; Manson, Abigail L; Earl, Ashlee M; Worby, Colin J.

Afiliação

Yorki S; Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Shea T; Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Cuomo CA; Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Walker BJ; Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
LaRocque RC; Applied Invention, LLC, Cambridge, MA, USA.
Manson AL; Division of Infectious Diseases, Massachusetts General Hospital, Boston, MA, USA.
Earl AM; Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Worby CJ; Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.

Brief Bioinform ; 24(2)2023 03 19.

Article em En | MEDLINE | ID: mdl-36804804

Assuntos

Metagenoma; Microbiota; Análise de Sequência de DNA/métodos; Escherichia coli/genética; Microbiota/genética; Metagenômica/métodos; Sequenciamento de Nucleotídeos em Larga Escala/métodos

Palavras-chave

antibiotic resistance; assembly benchmarking; long reads; low abundance; metagenomic assembly; plasmid assembly

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Texto completo: 1 Coleções: 01-internacional Base de dados: MEDLINE Assunto principal: Metagenoma / Microbiota Idioma: En Revista: Brief Bioinform Assunto da revista: BIOLOGIA / INFORMATICA MEDICA Ano de publicação: 2023 Tipo de documento: Article País de afiliação: Estados Unidos

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