Chromosome-level genome assembly of the western flower thrips Frankliniella occidentalis.
Sci Data
; 11(1): 582, 2024 Jun 04.
Article
em En
| MEDLINE
| ID: mdl-38834623
ABSTRACT
The western flower thrips Frankliniella occidentalis (Thysanoptera Thripidae) is a global invasive species that causes increasing damage by direct feeding on crops and transmission of plant viruses. Here, we assemble a previously published scaffold-level genome into a chromosomal level using Hi-C sequencing technology. The assembled genome has a size of 302.58 Mb, with a contig N50 of 1533 bp, scaffold N50 of 19.071 Mb, and BUSCO completeness of 97.8%. All contigs are anchored on 15 chromosomes. A total of 16,312 protein-coding genes are annotated in the genome with a BUSCO completeness of 95.2%. The genome contains 492 non-coding RNA, and 0.41% of interspersed repeats. In conclusion, this high-quality genome provides a convenient and high-quality resource for understanding the ecology, genetics, and evolution of thrips.
Texto completo:
1
Coleções:
01-internacional
Base de dados:
MEDLINE
Assunto principal:
Genoma de Inseto
/
Tisanópteros
Limite:
Animals
Idioma:
En
Revista:
Sci Data
Ano de publicação:
2024
Tipo de documento:
Article
País de afiliação:
China