Molecular phylogeny of Banjo catfishes (Ostaryophisi: Siluriformes: Aspredinidae): A continental radiation in South American freshwaters.

The family Aspredinidae is a moderately diverse and broadly distributed group of freshwater fishes endemic to South America. Commonly known as Banjo Catfishes, Aspredinidae currently includes 44 valid species divided among 13 genera. The first species-comprehensive hypothesis on phylogenetic relationships among aspredinids is presented. The phylogeny is based on DNA sequence data for five gene fragments (mitochondrial 16S and COI; nuclear RAG1, MYH6 and SH3PX3) from 114 individuals representing 31 species in 12 aspredinid genera. Analyses of molecular data support the monophyly of most genera (Bunocephalus excepted) and several higher-level relationships previously proposed by morphological studies. Based on the molecular phylogeny, a new suprageneric classification for Aspredinidae is proposed with the new monotypic subfamily Pseudobunocephalinae as the sister taxon to all other aspredinids.

Phylogeny of the North American catfish family Ictaluridae (Teleostei: Siluriformes) combining morphology, genes and fossils.

We performed the first combined-data phylogenetic analysis of ictalurids including most living and fossil species. We sampled 56 extant species and 16 fossil species representing outgroups, the seven living genera, and the extinct genus †Astephus long thought to be an ictalurid. In total, 209 morphological characters were curated and illustrated in MorphoBank from published and original work, and standardized using reductive coding. Molecular sequences harvested from GenBank for one nuclear and four mitochondrial genes were combined with the morphological data for total evidence analysis. Parsimony analysis recovers a crown clade Ictaluridae composed of seven living genera and numerous extinct species. The oldest ictalurid fossils are the Late Eocene members of Ameiurus and Ictalurus. The fossil clade †Astephus placed outside of Ictaluridae and not as its sister taxon. Previous morphological phylogenetic studies of Ictaluridae hypothesized convergent evolution of troglobitic features among the subterranean species. In contrast, we found morphological evidence to support a single clade of the four troglobitic species, the sister taxon of all ictalurids. This result holds whether fossils are included or not. Some previously published clock-based age estimates closely approximate our minimum ages of clades.

Molecular phylogeny of thorny catfishes (Siluriformes: Doradidae).

Doradidae is a monophyletic catfish family endemic to continental South America, and composed of 93 valid species here placed in 31 genera. Existing phylogenetic hypotheses for Doradidae are derived from comprehensive analyses of morphological data, and a single molecular-based study on a limited subset of taxa. To provide a robust molecular phylogeny commensurate with those based on morphology, we gathered original and published sequence data for 86 species-level taxa (at least 70 valid species plus 16 new or questionably nominal species) and all genera of Doradidae, as well as 10 species (nine genera) of Auchenipteridae and three species and genera of Aspredinidae as outgroups. 3011 base pairs were aligned for two mitochondrial genes (cytochrome c oxidase subunit 1, and 16S ribosomal RNA) and one nuclear gene (recombination activating gene 1), and analyzed for a total of 143 specimens (130 doradids, 10 auchenipterids and three aspredinids). Tree topologies generated by Maximum Parsimony, Maximum Likelihood, and Bayesian analyses were largely congruent, and are compared to existing phylogenies based on morphology and molecules. Although many of the relationships supported by our molecular analyses corroborated those based on morphology, others are newly hypothesized or remain in conflict. The monotypic Wertheimeria, Franciscodoras and Kalyptodoras, for example, form a newly proposed clade, and the subfamily Astrodoradinae is placed at the base of the doradid tree. The monotypic Doraops and Centrochir, endemic to Caribbean drainages north and west of the Andes, are sister to Pterodoras and Platydoras, respectively, two genera that are widely distributed in Atlantic drainages. Additional biogeographic implications are discussed for hypothesized relationships among doradids. Molecular evidence strongly supports synonymization of monotypic Merodoras with Amblydoras, and transfer of Amblydoras bolivarensis to genus Scorpiodoras. Furthermore, we consider Opsodoras ternetzi to be more properly placed in the genus Nemadoras. The genus Opsodoras may warrant synonymization with Hemidoras, and the monophyly of genus Ossancora is not supported; however, we refrain from taxonomic decisions regarding those taxa until a broader spectrum of doradids can be submitted to further morphological and molecular phylogenetic analyses.

Towards a complete classification of the Neotropical thorny catfishes (Siluriformes: Doradidae)

We propose a revised classification of Doradidae based on phylogenetic analyses of sequence data for one nuclear (rag1) and two mitochondrial (co1, 16s) genes, and corroborated by caudal-fin morphology. The molecular dataset comprises 174 doradid specimens representing all 31 valid genera, 83 of the 96 valid extant species and 17 species-level taxa that remain undescribed or nominally unassigned. Parsimony and Bayesian analyses of molecular data support six major lineages of doradids assigned here to three nominal subfamilies (Astrodoradinae, Doradinae, Wertheimerinae) and three new ones (Acanthodoradinae, Agamyxinae, Rhinodoradinae). The maximum parsimony topology of Doradidae was sensitive to ingroup density and outgroup age. With the exceptions of Astrodoradinae and Doradinae, each subfamily is diagnosed by caudal-fin characteristics. The highest degree of fusion among skeletal elements supporting the caudal fin is observed in Acanthodoradinae and Aspredinidae, lineages that are sister to the remaining doradids and aspredinoids (i.e., Auchenipteridae + Doradidae), respectively. Fusion among caudal-fin elements tends to be higher in taxa with rounded, truncate or emarginate tails and such taxa typically occupy shallow, lentic habitats with ample structure. Caudal-fin elements are more separated in taxa with moderately to deeply forked tails that occupy lotic habitats in medium to large river channels.(AU)

Propomos uma classificação revisada de Doradidae baseada na análise filogenética de dados moleculares dos genes rag1, co1 e 16s, e suportada pela morfologia da nadadeira caudal. A matriz molecular inclui 174 espécimes de doradídeos representando os 31 gêneros válidos, 83 das 96 espécies viventes e 17 táxons não descritos ou nominalmente não designados. As análises de parcimônia e bayesiana suportam seis linhagens principais de doradídeos atribuídas a três subfamílias nominais (Astrodoradinae, Doradinae, Wertheimerinae) e três novas subfamílias (Acanthodoradinae, Agamyxinae, Rhinodoradinae). A árvore de máxima parcimônia de Doradidae é sensível à densidade de grupo interno e a idade do grupo externo. Com exceção de Astrodoradinae e Doradinae, cada subfamília é diagnosticada por características da nadadeira caudal. Dentro da família Doradidae e da superfamília Aspredinioidea (Aspredinidae, Auchenipteridae e Doradidae), o maior grau de fusão entre os elementos da nadadeira caudal é observado nas linhagens mais antigas, Acanthodoradinae e Aspredinidae, respectivamente. A fusão entre os elementos da nadadeira caudal é maior em táxons com a caudal arredondada, truncada ou emarginada e esses táxons normalmente ocupam habitats lênticos rasos. Os elementos da nadadeira caudal são mais separados em táxons com a cauda bifurcada ocupando habitats lóticos em canais de rios médios a grandes.(AU)

Platydoras brachylecis, a new species of thorny catfish (Siluriformes: Doradidae) from northeastern Brazil

Platydoras brachylecis, new species, is described from coastal drainages of northeastern Brazil (Pindaré to Parnaíba rivers), and diagnosed from congeners by the unique combination of: pale yellow to white stripe beginning above orbits, continuing midlaterally on body and onto middle rays of caudal fin; skin in axil of each midlateral thorn without concentration of pigment forming small dark spot, midlateral scutes shallow (depth of 10th scute 8.8-11.9 percent of SL), and midlateral scutes on caudal peduncle distinctly separated by strip of skin from middorsal and midventral caudal-peduncle plates. Three additional species of Platydoras are recognized as valid: P. armatulus (lower Orinoco, Amazon and Paraguay-Paraná drainages), P. costatus (coastal drainages of Suriname and French Guiana), and P. hancockii (upper Orinoco, Negro, Essequibo and Demerara drainages). The nominal species P. dentatus and P. helicophilus are tentatively treated as junior synonyms of P. costatus. A key to species of Platydoras is provided.

Platydoras brachylecis, espécie nova, é descrita para as drenagens costeiras do nordeste do Brasil (rios Pindaré a Parnaíba) e diagnosticada de suas congêneres pela exclusiva combinação dos seguintes caracteres: faixa amarelo-pálida a branco iniciando acima das órbitas, continuando médio-lateralmente sobre o corpo e atingindo os raios medianos da nadadeira caudal; pele das axilas dos espinhos médio-laterais sem concentração de pequenas pintas negras; escudos médio-laterais baixos (altura do décimo escudo 8.8-11.9 por cento do comprimento padrão) e escudos médio-laterais do pedúnculo caudal distintamente separados das placas médio-dorsais e médio-ventrais da mesma região por uma faixa de pele. Mais três espécies de Platydoras são reconhecidas como válidas: P. armatulus (distribuída pelas drenagens do baixo Orinoco, Amazônia e Paraguai-Paraná), P. costatus (drenagens costeiras do Suriname e Guiana Francesa) e P. hancockii (drenagens do Negro, Essequibo, Demerara e alto Orinoco). As espécies nominais P. dentatus e P. helicophilus são provisoriamente consideradas sinônimos juniores de P. costatus. Uma chave de identificação para as espécies do gênero Platydoras é apresentada.