Oxidation of Sulfonamide Antibiotics of Six-Membered Heterocyclic Moiety by Ferrate(VI): Kinetics and Mechanistic Insight into SO2 Extrusion.

This work presents ferrate(VI) (FeVIO42-, FeVI) oxidation of a wide range of sulfonamide antibiotics (SAs) containing five- and six-membered heterocyclic moieties ( R) in their molecular structures. Kinetics measurements of the reactions between FeVI and SAs at different pH (6.5-10.0) give species-specific second-order rate constants, k5 and k6 of the reactions of protonated FeVI (HFeO4-) and unprotonated FeVI (FeVIO42-) with protonated SAs (HX), respectively. The values of k5 varied from (1.2 ± 0.1) × 103 to (2.2 ± 0.2) × 104 M-1 s-1, while the range of k6 was from (1.1 ± 0.1) × 102 to (1.0 ± 0.1) × 103 M-1 s-1 for different SAs. The transformation products of reaction between FeVI and sulfadiazine (SDZ, contains a six-membered R) include SO2 extrusion oxidized products (OPs) and aniline hydroxylated products. Comparatively, oxidation of sulfisoxazole (SIZ, a five-membered R) by FeVI has OPs that have no SO2 extrusion in their structures. Density functional theory calculations are performed to demonstrate SO2 extrusion in oxidation of SDZ by FeVI. The detailed mechanisms of oxidation are proposed to describe the differences in the oxidation of six- and five-membered heterocyclic moieties ( R) containing SAs (i.e., SDZ versus SIZ) by FeVI.

Novel computational study on π-stacking to understand mechanistic interactions of Tryptanthrin analogues with DNA.

Based on recently published initial experimental results on the intercalation of a class of broad spectrum antiparasitic compounds, we present a purely theoretical approach for determining if these compounds may preferentially intercalate with guanosine/cytosine (GC)-rich or adenosine/thymidine (TA)-rich regions of DNA. The predictive model presented herein is based upon utilization of density functional theory (DFT) to determine a priori how the best intercalator may energetically and sterically interact with each of the nucleoside base pairs. A potential new method using electrostatic potential maps (EPMs) to visually select the best poses is introduced and compared to the existing brute-force center of mass (COM) approach. The EPM and COM predictions are in agreement with each other, but the EPM method is potentially much more efficient. We report that 4-azatryptantrin, the best intercalator, is predicted to favor π-stacking with GC over that of TA by approximately 2-4 kcal/mol. This represents a significant difference if one takes into account the Boltzmann distribution at physiological temperature. This theoretical method will be utilized to guide future experimental studies on the elucidation of possible mechanism(s) for the action of these antiparasitic compounds at the molecular level.

New insight into the action of tryptanthrins against Plasmodium falciparum: Pharmacophore identification via a novel submolecular QSAR descriptor.

A new submolecular quantitative structure activity relationship (QSAR) descriptor was applied toward elucidating the anti-malarial pharmacophore of tryptanthrins, a class of compounds known for their anti-parasitic activities. The new descriptor is based on experimental and computational measurements of the tunneling barriers of individual lobes of the molecular orbitals. Lobe-by-lobe QSAR correlation plots revealed a single lobe of the LUMO to be strongly associated with tryptanthrin's anti-malarial activity. The correlation also showed a threshold behavior wherein barriers below a particular value show low IC50 values. Above the threshold, the correlation of IC50 vs the logarithm of the barrier is linear with R2 = 0.999. This barrier threshold may be applied as a design criterion for future tryptanthrin-based anti-malarial lead optimization. The new descriptor may be broadly applicable toward other molecular systems of interest, such as catalysts, pesticides, and herbicides. The authors have named the new descriptor: submolecular tunneling analysis of barriers (STAB).

Organic matter source discrimination by humic acid characterization: synchronous scan fluorescence spectroscopy and Ferrate(VI).

In this study, seven soil and sedimentary humic acid samples were analyzed by synchronous scan fluorescence (SSF) spectroscopy. The spectra of these humic acids were compared to each other and characterized, based on three major SSF peaks centered at approximately 281, 367 and 470 nm. Intensity ratios were calculated based on these peaks that were used to numerically assist in source discrimination. All humic acid samples were then reacted with Ferrate(VI) and were again analyzed with SSF. Upon the addition of Ferrate(VI) SSF spectra were obtained which more readily differentiated humic acid source. This method will assist geochemists and water management districts in tracing sources of organic matter to receiving water bodies and may aid in the elucidation of the chemical nature of humic acids.

Size matters: room temperature P-C bond formation through C-H activation in m-terphenyldiiodophosphines.

m-Terphenyl- and biphenyl-2-diiodophosphines, TerphPI 2 and BiphPI 2, have been obtained by halide exchange from the chloro derivatives TerphPCl 2 and BiphPCl 2 and excess LiI in a benzene solution at room temperature. Whereas BiphPI 2 compounds are stable, the TerphPI 2 species undergo intramolecular C-H activation at room temperature and cyclize to form unsymmetrical 9-iodo-9-phosphafluorenes 1-(3,5-dimethylphenyl)-6,8-dimethyl-9-iodo-9-phosphafluorene, 4; 1-(4-t-butylphenyl)-7-t-butyl-9-iodo-9-phosphafluorene, 5; and 1-(2-methylphenyl)-5-methyl-9-iodo-9-phosphafluorene, 6, albeit the latter reaction is rather slow due to unfavorable steric interactions. Cyclization of the alkyl-substituted 4,4'-di- tert-butyl-biphenyl-2-diiodophosphine, 11, is slow in refluxing benzene solution, but faster than that for the parent biphenyl-2-diiodophosphine. Ab initio and density functional theory calculations are in agreement with an electrophilic aromatic substitution mechanism that is facilitated by steric strains in the terphenyl compounds 2,6-(3,5-Me2C6H3)2C6H3PI2, 1; 2,6-(4-t-BuC6H4)2C6H3PI 2, 2; and 2,6-(2-MeC6H4)2C6H3PI 2, 3. All new compounds have been characterized by multinuclear NMR spectroscopy and direct analysis in real time mass spectrometry. 9-Iodo-9-phosphafluorene, 12, was also analyzed by X-ray diffraction.