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Nucleic Acids Res ; 42(Database issue): D142-7, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24194598

RESUMEN

JASPAR (http://jaspar.genereg.net) is the largest open-access database of matrix-based nucleotide profiles describing the binding preference of transcription factors from multiple species. The fifth major release greatly expands the heart of JASPAR-the JASPAR CORE subcollection, which contains curated, non-redundant profiles-with 135 new curated profiles (74 in vertebrates, 8 in Drosophila melanogaster, 10 in Caenorhabditis elegans and 43 in Arabidopsis thaliana; a 30% increase in total) and 43 older updated profiles (36 in vertebrates, 3 in D. melanogaster and 4 in A. thaliana; a 9% update in total). The new and updated profiles are mainly derived from published chromatin immunoprecipitation-seq experimental datasets. In addition, the web interface has been enhanced with advanced capabilities in browsing, searching and subsetting. Finally, the new JASPAR release is accompanied by a new BioPython package, a new R tool package and a new R/Bioconductor data package to facilitate access for both manual and automated methods.


Asunto(s)
Bases de Datos Genéticas , Elementos Reguladores de la Transcripción , Factores de Transcripción/metabolismo , Animales , Arabidopsis/genética , Sitios de Unión , Caenorhabditis elegans/genética , Drosophila melanogaster/genética , Humanos , Internet , Ratones , Posición Específica de Matrices de Puntuación
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