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1.
Int Microbiol ; 2024 Jun 12.
Artículo en Inglés | MEDLINE | ID: mdl-38867105

RESUMEN

Hydrocarbon and heavy metal pollution are amongst the most severe and prevalent environmental problems due to their toxicity and persistence. Bioremediation using microorganisms is considered one of the most effective ways to treat polluted sites. In the present study, we unveil the bioremediation potential of Brucella pituitosa strain BU72. Besides its ability to grow on multiple hydrocarbons as the sole carbon source and highly tolerant to several heavy metals, BU72 produces different exopolysaccharide-based surfactants (EBS) when grown with glucose or with crude oil as sole carbon source. These EBS demonstrated particular and specific functional groups as determined by Fourier transform infrared (FTIR) spectral analysis that showed a strong absorption peak at 3250 cm-1 generated by the -OH group for both EBS. The FTIR spectra of the produced EBS revealed major differences in functional groups and protein content. To better understand the EBS production coupled with the degradation of hydrocarbons and heavy metal resistance, the genome of strain BU72 was sequenced. Annotation of the genome revealed multiple genes putatively involved in EBS production pathways coupled with resistance to heavy metals genes such as arsenic tolerance and cobalt-zinc-cadmium resistance. The genome sequence analysis showed the potential of BU72 to synthesise secondary metabolites and the presence of genes involved in plant growth promotion. Here, we describe the physiological, metabolic, and genomic characteristics of Brucella pituitosa strain BU72, indicating its potential as a bioremediation agent.

2.
Genetica ; 151(2): 133-152, 2023 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-36795306

RESUMEN

Halophilic archaea are polyextremophiles with the ability to withstand fluctuations in salinity, high levels of ultraviolet radiation, and oxidative stress, allowing them to survive in a wide range of environments and making them an excellent model for astrobiological research. Natrinema altunense 4.1R is a halophilic archaeon isolated from the endorheic saline lake systems, Sebkhas, located in arid and semi-arid regions of Tunisia. It is an ecosystem characterized by periodic flooding from subsurface groundwater and fluctuating salinities. Here, we assess the physiological responses and genomic characterization of N. altunense 4.1R to UV-C radiation, as well as osmotic and oxidative stresses. Results showed that the 4.1R strain is able to survive up to 36% of salinity, up to 180 J/m2 to UV-C radiation, and at 50 mM of H2O2, a resistance profile similar to Halobacterium salinarum, a strain often used as UV-C resistant model. In order to understand the genetic determinants of N. altunense 4.1R survival strategy, we sequenced and analyzed its genome. Results showed multiple gene copies of osmotic stress, oxidative stress, and DNA repair response mechanisms supporting its survivability at extreme salinities and radiations. Indeed, the 3D molecular structures of seven proteins related to responses to UV-C radiation (excinucleases UvrA, UvrB, and UvrC, and photolyase), saline stress (trehalose-6-phosphate synthase OtsA and trehalose-phosphatase OtsB), and oxidative stress (superoxide dismutase SOD) were constructed by homology modeling. This study extends the abiotic stress range for the species N. altunense and adds to the repertoire of UV and oxidative stress resistance genes generally known from haloarchaeon.


Asunto(s)
Halobacteriaceae , Rayos Ultravioleta , Ecosistema , Peróxido de Hidrógeno , Halobacteriaceae/genética , Estrés Oxidativo , Genómica
3.
Arch Microbiol ; 205(2): 73, 2023 Jan 27.
Artículo en Inglés | MEDLINE | ID: mdl-36705763

RESUMEN

Over the last decades, losses of bee populations have been observed worldwide. A panoply of biotic and abiotic factors, as well as the interplay among them, has been suggested to be responsible for bee declines, but definitive causes have not yet been identified. Among pollinators, the honeybee Apis mellifera is threatened by various diseases and environmental stresses, which have been shown to impact the insect gut microbiota that is known to be fundamental for host metabolism, development and immunity. Aimed at preserving the gut homeostasis, many researches are currently focusing on improving the honeybee health through the administration of probiotics e.g., by boosting the innate immune response against microbial infections. Here, we review the knowledge available on the characterization of the microbial diversity associated to honeybees and the use of probiotic symbionts as a promising approach to maintain honeybee fitness, sustaining a healthy gut microbiota and enhancing its crucial relationship with the host immune system.


Asunto(s)
Microbioma Gastrointestinal , Probióticos , Abejas , Animales , Probióticos/uso terapéutico , Inmunidad Innata , Manejo de la Enfermedad
4.
Genomics ; 113(1 Pt 1): 317-330, 2021 01.
Artículo en Inglés | MEDLINE | ID: mdl-33279651

RESUMEN

A new strain belonging to the genus Kocuria, designed PT10, was isolated from irradiated roots of the xerophyte Panicum turgidum. Isolate PT10 is a Gram-positive, coccoid, aerobic and ionizing-radiation (IR)-resistant actinobacterium. PT10 has shown an ability to survive under extreme conditions, such as gamma irradiation, desiccation and high concentration of hydrogen peroxide. Phenotypic, chemotaxonomic and comparative genome analyses support the assignment of strain PT10 (LMG 31102 = DSM 108617) as Kocuria rhizophila. The complete genome sequence of PT10 consists of one chromosome (2,656,287 bps), with a 70.7% G + C content and comprises 2481 protein-coding sequences. A total of 1487 proteins were identified by LC-MS/MS profiling. In silico analyses revealed that the proteome of the oxidation-tolerant PT10 possesses several features explaining its IR-resistant phenotype and many adaptive pathways implicated in response to environmental pressures - desiccation, cold, reactive oxygen species and other stressors.


Asunto(s)
Genes Bacterianos , Micrococcaceae/genética , Panicum/microbiología , Tolerancia a Radiación , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Desecación , Rayos gamma , Micrococcaceae/patogenicidad , Micrococcaceae/efectos de la radiación , Estrés Oxidativo
5.
Environ Microbiol ; 23(10): 6275-6291, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-34490977

RESUMEN

Aridity negatively affects the diversity and abundance of edaphic microbial communities and their multiple ecosystem services, ultimately impacting vegetation productivity and biotic interactions. Investigation about how plant-associated microbial communities respond to increasing aridity is of particular importance, especially in light of the global climate change predictions. To assess the effect of aridity on plant associated bacterial communities, we investigated the diversity and co-occurrence of bacteria associated with the bulk soil and the root system of olive trees cultivated in orchards located in higher, middle and lower arid regions of Tunisia. The results indicated that the selective process mediated by the plant root system is amplified with the increment of aridity, defining distinct bacterial communities, dominated by aridity-winner and aridity-loser bacteria negatively and positively correlated with increasing annual rainfall, respectively. Aridity regulated also the co-occurrence interactions among bacteria by determining specific modules enriched with one of the two categories (aridity-winners or aridity-losers), which included bacteria with multiple PGP functions against aridity. Our findings provide new insights into the process of bacterial assembly and interactions with the host plant in response to aridity, contributing to understand how the increasing aridity predicted by climate changes may affect the resilience of the plant holobiont.


Asunto(s)
Ecosistema , Olea , Bacterias/genética , Clima Desértico , Suelo , Microbiología del Suelo
6.
Arch Microbiol ; 203(7): 4641-4651, 2021 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-34173006

RESUMEN

Pentachlorophenol (PCP) is a toxic compound, which is widely used as a wood preservative product and general biocide. It is persistent in the environment and has been classified as a persistent organic pollutant to be reclaimed in many countries. Bioremediation is an emerging approach to rehabilitating areas polluted by recalcitrant xenobiotics. In the present study, we evaluated the potential of three strains of Pseudomonas (P. putida S121, P. rhizophila S211, and P. fuscovagiceae S115) as bioremediation agents in depletion and detoxification of PCP in soil microcosms. PCP removal was effectively optimized using a central-composite experimental design and response surface methodology (RSM). The optimum conditions for maximum PCP removal yield (85 ± 5%) were: 500 mg/kg PCP concentration, 108 UFC/g soil inoculum size of each strain and 55 days incubation period. The bacterial strains, P. putida, P. rhizophila, and P. fuscovagiceae, showed good capability to tolerate and degrade PCP so that they could be successfully used in synergistic effect to treat PCP polluted soils.


Asunto(s)
Pentaclorofenol , Pseudomonas , Microbiología del Suelo , Contaminantes del Suelo , Biodegradación Ambiental , Pentaclorofenol/metabolismo , Pseudomonas/metabolismo , Suelo/química , Contaminantes del Suelo/metabolismo
7.
Int Microbiol ; 24(3): 455-470, 2021 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-34100180

RESUMEN

The reemergence of infectious diseases and resistant pathogens represents a serious problem for human life. Hence, the screening for new or alternative antimicrobial compounds is still urgent. Unusual ecosystems such as saline habitats are considered promising environments for the purposes of isolating bacterial strains able to produce potent natural products. The aim of this study is the identification of bioactive compounds biosynthesized by three halotolerant strains isolated from the Sebkha of Oran (Algeria) using gas chromatography coupled to mass spectrometry. Primary screening investigation of antimicrobial activities were performed against reference bacterial and fungal strains and revealed a broad-spectrum activity. Secondary metabolite extraction was carried out using ethyl acetate and chloroform. Crude extracts were tested for bioactivity using the disc diffusion method and subjected to GC-MS analysis. The extracts showed an important inhibitory effect against all tested strains. Fifty-six compounds were identified; they include tert-butyl phenol compounds, fatty acid methyl esters due to the methylation procedure, hydrocarbons, aldehydes, benzoquinones, pyrrols, and terpenes. Literature reports such compounds to have wide biological and pharmaceutical applications. The molecular identification of the three isolates was achieved using the 16S-23S rRNA gene intergenic spacer region (ITS) and 16S rRNA sequencing. Partial 16S rRNA gene sequencing showed very high similarity with many species of Bacillus. This study provided insights on the potential of halotolerant Bacillus as drug research target for bioactive metabolites. The findings suggest that the Great Sebkha of Oran is a valuable source of strains exhibiting variety of beneficial attributes that can be utilized in the development of biological antibiotics.


Asunto(s)
Antiinfecciosos/metabolismo , Antiinfecciosos/farmacología , Bacillus licheniformis/metabolismo , Bacterias/efectos de los fármacos , Hongos/efectos de los fármacos , Argelia , Bacillus licheniformis/clasificación , Bacillus licheniformis/genética , Bacillus licheniformis/aislamiento & purificación , ADN Bacteriano , Ecosistema , Cromatografía de Gases y Espectrometría de Masas/métodos , Lagos/microbiología , Pruebas de Sensibilidad Microbiana , ARN Ribosómico 16S , Tolerancia a la Sal , Metabolismo Secundario , Microbiología del Suelo
8.
Extremophiles ; 25(1): 25-38, 2021 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-33104875

RESUMEN

A novel strain of the genus Promicromonospora, designated PT9T, was recovered from irradiated roots of the xerophyte Panicum turgidum collected from the Ksar Ghilane oasis in southern Tunisia. Strain PT9T is aerobic, non-spore-forming, Gram- positive actinomycete that produces branched hyphae and forms white to yellowish-white colonies. Chemotaxonomic features, including fatty acids, whole cell sugars and polar lipid profiles, support the assignment of PT9T to the genus Promicromonospora. The genomic relatedness indexes based on DNA-DNA hybridization and average nucleotide identity values revealed a significant genomic divergence between strain PT9T and all sequenced type strains of the taxon. Phylogenomic analysis showed that isolate PT9T was most closely related to Promicromonospora soli CGMCC 4.7398T. Phenotypic and phylogenomic analyses suggest that isolate PT9T represents a novel species of the genus Promicromonospora, for which the name Promicromonospora panici sp. nov. is proposed. The type strain is PT9T (LMG 31103T = DSM 108613T).The isolate PT9T is an ionizing-radiation-resistant actinobacterium (D10 value = 2.6 kGy), with resistance to desiccation and hydrogen peroxide. The complete genome sequence of PT9T consists of 6,582,650 bps with 71.2% G+C content and 6291 protein-coding sequences. This genome will help to decipher the microbial genetic bases for ionizing-radiation resistance mechanisms including the response to oxidative stress.


Asunto(s)
Actinobacteria/clasificación , Panicum/microbiología , Filogenia , Radiación Ionizante , Actinobacteria/aislamiento & purificación , Actinobacteria/efectos de la radiación , Técnicas de Tipificación Bacteriana , Composición de Base , ADN Bacteriano , Ácidos Grasos/química , Hibridación de Ácido Nucleico , Raíces de Plantas/microbiología , ARN Ribosómico 16S , Análisis de Secuencia de ADN , Túnez
9.
Molecules ; 26(8)2021 Apr 14.
Artículo en Inglés | MEDLINE | ID: mdl-33919750

RESUMEN

Breast cancer (BC) is the most common form of cancer among women worldwide. Despite the huge advancements in its treatment, the exact etiology of breast cancer still remains unresolved. There is an increasing interest in the role of the gut microbiome in modulating the anti-cancer therapeutic response. It seems that alteration of the microbiome-derived metabolome potentially promotes carcinogenesis. Taken together, metabolomics has arisen as a fascinating new omics field to screen promising metabolic biomarkers. In this study, fecal metabolite profiling was performed using NMR spectroscopy, to identify potential biomarker candidates that can predict response to neoadjuvant chemotherapy (NAC) for breast cancer. Metabolic profiles of feces from patients (n = 8) following chemotherapy treatment cycles were studied. Interestingly, amino acids were found to be upregulated, while lactate and fumaric acid were downregulated in patients under the second and third cycles compared with patients before treatment. Furthermore, short-chain fatty acids (SCFAs) were significantly differentiated between the studied groups. These results strongly suggest that chemotherapy treatment plays a key role in modulating the fecal metabolomic profile of BC patients. In conclusion, we demonstrate the feasibility of identifying specific fecal metabolic profiles reflecting biochemical changes that occur during the chemotherapy treatment. These data give an interesting insight that may complement and improve clinical tools for BC monitoring.


Asunto(s)
Biomarcadores de Tumor/metabolismo , Neoplasias de la Mama/tratamiento farmacológico , Neoplasias de la Mama/metabolismo , Heces/química , Metabolómica , Terapia Neoadyuvante , Espectroscopía de Resonancia Magnética con Carbono-13 , Análisis Discriminante , Ácidos Grasos Volátiles/metabolismo , Femenino , Humanos , Análisis de los Mínimos Cuadrados , Masculino , Redes y Vías Metabólicas , Metaboloma , Persona de Mediana Edad , Análisis de Componente Principal , Espectroscopía de Protones por Resonancia Magnética , Curva ROC
10.
Genomics ; 111(6): 1802-1814, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-30529640

RESUMEN

Here, we report the genomic features and the bioremediation potential of Halomonas desertis G11, a new halophilic species which uses crude oil as a carbon and energy source and displays intrinsic resistance to salt stress conditions (optimum growth at 10% NaCl). G11 genome (3.96 Mb) had a mean GC content of 57.82%, 3622 coding sequences, 480 subsystems and 64 RNA genes. Annotation predicted 38 genes involved in osmotic stress including the biosynthesis of osmoprotectants glycine-betaine, ectoine and osmoregulated periplasmic glucans. Genome analysis revealed also the versatility of the strain for emulsifying crude oil and metabolizing hydrocarbons. The ability of G11 to degrade crude oil components and to secrete a glycolipid biosurfactant with satisfying properties was experimentally confirmed and validated. Our results help to explain the exceptional capacity of G11 to survive at extreme desertic conditions, and highlight the metabolic features of this organism that has biotechnological and ecological potentialities.


Asunto(s)
Genes Bacterianos , Halomonas/genética , Anotación de Secuencia Molecular , Petróleo/microbiología , Tensoactivos , Biodegradación Ambiental , Clima Desértico , Halomonas/metabolismo , Petróleo/metabolismo , Túnez
11.
Physiol Mol Biol Plants ; 26(1): 15-23, 2020 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-32158117

RESUMEN

Cadmium (Cd) is a heavy metal ion leading to morphological and physiological disorders in plants; a specific toxicity target is the membrane lipids. The total lipids were separated by thin-layer chromatography, and the fatty acid composition of the total (TLs), polar lipids (PLs) and triacylglycerol (TAG)-a neutral lipid-was analyzed in maize seedlings in hydroponics and treated by various Cd concentrations (0-200 µM Cd). The TLs and PLs significantly decreased in roots after Cd treatment, suggesting the onset of lipid peroxidation mediated by oxygen free radicals, that induce alterations of the membrane structure and function. There were also increases in the TAG from 28.2 to 36.9% of TLs, and the TAG/PLs ratio varied from 0.59 to 0.84, in control and after exposure to 200 µM Cd, respectively. The TAG plays potent roles in membrane turnover serving as energy and carbon resources for the biosynthesis of membrane lipids, to preserve membrane structure and function, and therefore cell homeostasis in response to Cd. In shoots, a significant increase in the levels of C16:0, C18:1, and C18:2, while a decrease in that of C18:3 was observed, suggesting inhibition of desaturases enzymes. These lead to impairment of the chloroplast membrane. The total lipid content did not change under Cd stress. The PLs, however, decreased from 22.4 to 13.6 mg g-1 DW; their percent to TLs varied from 86.6 to 52.5%, in control, and after Cd treatment, respectively. In conclusion, the accumulation of TAG may represent a defense strategy by which maize seedlings can withstand the effects of Cd toxicity, leading to reduced oxidative stress.

12.
Microb Cell Fact ; 17(1): 83, 2018 May 31.
Artículo en Inglés | MEDLINE | ID: mdl-29855369

RESUMEN

BACKGROUND: Water stress is a critical issue for plant growth in arid sandy soils. Here, we aimed to select bacteria producing polyextremotolerant surface-active compounds capable of improving water retention and humidity uptake in sandy soils. RESULTS: From Tunisian desert and saline systems, we selected eleven isolates able to highly emulsify different organic solvents. The bioemulsifying activities were stable with 30% NaCl, at 4 and 120 °C and in a pH range 4-12. Applications to a sandy soil of the partially purified surface-active compounds improved soil water retention up to 314.3% compared to untreated soil. Similarly, after 36 h of incubation, the humidity uptake rate of treated sandy soil was up to 607.7% higher than untreated controls. CONCLUSIONS: Overall, results revealed that polyextremotolerant bioemulsifiers of bacteria from arid and desert soils represent potential sources to develop new natural soil-wetting agents for improving water retention in arid soils.


Asunto(s)
Bacterias/química , Suelo/química , Agua/química , Humedad
13.
J Basic Microbiol ; 58(10): 827-835, 2018 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-30019339

RESUMEN

Androctonus australis is one of the most ubiquitous and common scorpion species in desert and arid lands from North Africa to India and it has an important ecological role and social impact. The bacterial community associated to this arachnid is unknown and we aimed to dissect its species composition in the gut, gonads, and venom gland. A 16S rRNA gene culture-independent diversity analysis revealed, among six other taxonomic groups (Firmicutes, Betaproteobacteria, Gammaproteobacteria, Flavobacteria, Actinobacteria, and Cyanobacteria), a dominance of Mollicutes phylotypes recorded both in the digestive tract and the gonads. These related Mollicutes include two Spiroplasma phylotypes (12.5% of DGGE bands and 15% of clones), and a new Mycoplasma cluster (80% of clones) showing 16S rRNA sequence identities of 95 and 93% with Mollicutes detected in the Mexican scorpions Centruroides limpidus and Vaejovis smithi, respectively. Such scorpion-associated Mollicutes form a new lineage that share a distant ancestor with Mycoplasma hominis. The observed host specificity with the apparent phylogenetic divergence suggests a relatively long co-evolution of these symbionts with the scorpion hosts. From the ecological point of view, such association may play a beneficial role for the host fitness, especially during dormancy or molt periods.


Asunto(s)
Variación Genética , Filogenia , Escorpiones/microbiología , Simbiosis , Tenericutes/clasificación , Tenericutes/fisiología , Animales , Bacterias/clasificación , Bacterias/genética , Fenómenos Fisiológicos Bacterianos , ADN Bacteriano/genética , Especificidad del Huésped , India , México , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Tenericutes/genética
14.
Toxicol Ind Health ; 32(4): 707-13, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24215065

RESUMEN

A bacterium was isolated from the river of Oued Hamdoun (Tunisia), and its phenotypic features, physiological and chemotaxonomic characteristics and phylogenetic analysis of 16S ribosomal RNA sequence revealed it as Pseudomonas peli (P. peli). Chlorpyrifos ethyl (CP) was used as the sole source of carbon and energy by P. peli, and it was cometabolised in the presence of glucose. CP was completely degraded by P. peli after 96 h of shake incubation. High-performance liquid chromatography analysis indicated that the biodegradation kinetics was not affected by the addition of glucose into the culture medium. In the present study, only transient accumulation of one major no-identified product was observed after 48 h of incubation, with no other persistent metabolites detected. Cytotoxicity of CP, before and after biodegradation with P. peli, was evaluated in vitro using the MTT-colorimetric assay against three human cancer cell lines (A549, lung cell carcinoma, HT29, colon adenocarcinoma and MCF7, breast adenocarcinoma). CP reduced viability of all human cell lines in a dose-dependent manner. Its activity was very remarkable against A549 cell line. However, cytotoxicity strongly decreased in CP obtained after incubation with P. peli Hence, we conclude that when incubated under appropriate conditions,P. peli has a metabolism that completely detoxifies CP.


Asunto(s)
Biodegradación Ambiental , Cloropirifos , Pseudomonas , Contaminantes Químicos del Agua , Línea Celular Tumoral , Supervivencia Celular/efectos de los fármacos , Cloropirifos/metabolismo , Cloropirifos/toxicidad , Humanos , Pseudomonas/genética , Pseudomonas/aislamiento & purificación , Pseudomonas/metabolismo , Ríos/microbiología , Túnez , Contaminantes Químicos del Agua/metabolismo , Contaminantes Químicos del Agua/toxicidad
15.
Toxicol Ind Health ; 32(4): 686-93, 2016 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-24215064

RESUMEN

This article investigates the ability of Pseudomonas peli to treat industrial pharmaceuticals wastewater (PW). Liquid chromatography-mass spectrometry (MS)/MS analysis revealed the presence, in this PW, of a variety of antibiotics such as sulfathiazole, sulfamoxole, norfloxacine, cloxacilline, doxycycline, and cefquinome.P. peli was very effective to be grown in PW and inducts a remarkable increase in chemical oxygen demand and biochemical oxygen demand (140.31 and 148.51%, respectively). On the other hand, genotoxicity of the studied effluent, before and after 24 h of shaking incubation with P. peli, was evaluated in vivo in the Mediterranean wild mussels Mytilus galloprovincialis using comet assay for quantification of DNA fragmentation. Results show that PW exhibited a statistically significant (p< 0.001) genotoxic effect in a dose-dependent manner; indeed, the percentage of genotoxicity was 122.6 and 49.5% after exposure to 0.66 ml/kg body weight (b.w.); 0.33 ml/kg b.w. of PW, respectively. However, genotoxicity decreased strongly when tested with the PW obtained after incubation with P. peli We can conclude that using comet assay genotoxicity end points are useful tools to biomonitor the physicochemical and biological quality of water. Also, it could be concluded that P. peli can treat and detoxify the studied PW.


Asunto(s)
Antibacterianos/toxicidad , Roturas del ADN/efectos de los fármacos , Monitoreo del Ambiente/métodos , Branquias/citología , Mytilus/citología , Contaminantes Químicos del Agua/toxicidad , Animales , Antibacterianos/análisis , Antibacterianos/metabolismo , Células Cultivadas , Ensayo Cometa , Branquias/metabolismo , Modelos Biológicos , Mytilus/metabolismo , Contaminantes Químicos del Agua/análisis , Contaminantes Químicos del Agua/metabolismo
16.
Appl Environ Microbiol ; 81(13): 4432-41, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25911472

RESUMEN

We examined the diversity and community structure of members of the halophilic Archaea (class Halobacteria) in samples from central and southern Tunisian endorheic salt lakes and sebkhet (also known as sebkha) systems using targeted 16S rRNA gene diversity survey and quantitative PCR (qPCR) approaches. Twenty-three different samples from four distinct locations exhibiting a wide range of salinities (2% to 37%) and physical characteristics (water, salt crust, sediment, and biofilm) were examined. A total of 4,759 operational taxonomic units at the 0.03 (species-level) cutoff (OTU0.03s) belonging to 45 currently recognized genera were identified, with 8 to 43 genera (average, 30) identified per sample. In spite of the large number of genera detected per sample, only a limited number (i.e., 2 to 16) usually constituted the majority (≥80%) of encountered sequences. Halobacteria diversity showed a strong negative correlation to salinity (Pearson correlation coefficient = -0.92), and community structure analysis identified salinity, rather than the location or physical characteristics of the sample, as the most important factor shaping the Halobacteria community structure. The relative abundance of genera capable of biosynthesis of the compatible solute(s) trehalose or 2-sulfotrehalose decreased with increasing salinities (Pearson correlation coefficient = -0.80). Indeed, qPCR analysis demonstrated that the Halobacteria otsB (trehalose-6-phosphatase)/16S rRNA gene ratio decreases with increasing salinities (Pearson correlation coefficient = -0.87). The results highlight patterns and determinants of Halobacteria diversity at a previously unexplored ecosystem and indicate that genera lacking trehalose biosynthetic capabilities are more adapted to growth in and colonization of hypersaline (>25% salt) ecosystems than trehalose producers.


Asunto(s)
Biodiversidad , Halobacteriales/clasificación , Halobacteriales/aislamiento & purificación , Lagos/microbiología , ADN de Archaea/química , ADN de Archaea/genética , ADN Ribosómico/química , ADN Ribosómico/genética , Halobacteriales/genética , ARN Ribosómico 16S/genética , Análisis de Secuencia de ADN , Túnez
17.
Microb Pathog ; 89: 54-61, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26343496

RESUMEN

Contamination of surface waters in underdeveloped countries is a great concern. Treated and untreated wastewaters have been discharged into rivers and streams, leading to possible waterborne infection outbreaks which may represent a significant dissemination mechanism of antibiotic resistance genes among pathogenic bacterial populations. The present study aims to determine the multi-drug resistance patterns among isolated and identified bacterial strains in a pharmaceutical wastewater effluent in north Tunisia. Fourteen isolates were obtained and seven of them were identified. These isolates belong to different genera namely, Pseudomonas, Acinetobacter, Exiguobacterium, Delftia and Morganella. Susceptibility patterns of these isolates were studied toward commonly used antibiotics in Tunisia. All the identified isolates were found to have 100% susceptibility against colistin sulfate and 100% resistance against amoxicillin. Among the 11 antibiotics tested, six patterns of multi-drug resistance were obtained. The potential of the examined wastewater effluent in spreading multi-drug resistance and the associated public health implications are discussed.


Asunto(s)
Bacterias/efectos de los fármacos , Bacterias/aislamiento & purificación , Farmacorresistencia Bacteriana Múltiple , Residuos Industriales , Aguas Residuales/microbiología , Antibacterianos/farmacología , Bacterias/clasificación , Industria Farmacéutica , Pruebas de Sensibilidad Microbiana , Túnez
18.
Microb Ecol ; 70(3): 724-40, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-25916483

RESUMEN

Uric acid is a promising hydrophobic nitrogen source for biostimulation of microbial activities in oil-impacted marine environments. This study investigated metabolic processes and microbial community changes in a series of microcosms using sediment from the Mediterranean and the Red Sea amended with ammonium and uric acid. Respiration, emulsification, ammonium and protein concentration measurements suggested a rapid production of ammonium from uric acid accompanied by the development of microbial communities containing hydrocarbonoclastic bacteria after 3 weeks of incubation. About 80 % of uric acid was converted to ammonium within the first few days of the experiment. Microbial population dynamics were investigated by Ribosomal Intergenic Spacer Analysis and Illumina sequencing as well as by culture-based techniques. Resulting data indicated that strains related to Halomonas spp. converted uric acid into ammonium, which stimulated growth of microbial consortia dominated by Alcanivorax spp. and Pseudomonas spp. Several strains of Halomonas spp. were isolated on uric acid as the sole carbon source showed location specificity. These results point towards a possible role of halomonads in the conversion of uric acid to ammonium utilized by hydrocarbonoclastic bacteria.


Asunto(s)
Compuestos de Amonio/metabolismo , Bacterias/genética , Consorcios Microbianos/genética , Ácido Úrico/metabolismo , Bacterias/metabolismo , Biodegradación Ambiental , ADN Bacteriano/genética , ADN Bacteriano/metabolismo , Jordania , Mar Mediterráneo , Petróleo/metabolismo , Reacción en Cadena de la Polimerasa , ARN Ribosómico 16S/genética , ARN Ribosómico 16S/metabolismo , Análisis de Secuencia de ADN
19.
Appl Microbiol Biotechnol ; 99(19): 7907-13, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26272092

RESUMEN

In the last decade, attention to extreme environments has increased because of interests to isolate previously unknown extremophilic microorganisms in pure culture and to profile their metabolites. Microorganisms that live in extreme environments produce extremozymes and extremolytes that have the potential to be valuable resources for the development of a bio-based economy through their application to white, red, and grey biotechnologies. Here, we provide an overview of extremophile ecology, and we review the most recent applications of microbial extremophiles and the extremozymes and extremolytes they produce to biotechnology.


Asunto(s)
Bacterias/enzimología , Proteínas Bacterianas/química , Enzimas/química , Bacterias/química , Bacterias/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Biotecnología , Estabilidad de Enzimas , Enzimas/genética , Enzimas/metabolismo
20.
ScientificWorldJournal ; 2014: 167681, 2014.
Artículo en Inglés | MEDLINE | ID: mdl-25215313

RESUMEN

Sl-ERF.B.3 (Solanum lycopersicum ethylene response factor B.3) gene encodes for a tomato transcription factor of the ERF (ethylene responsive factor) family. Our results of real-time RT-PCR showed that Sl-ERF.B.3 is an abiotic stress responsive gene, which is induced by cold, heat, and flooding, but downregulated by salinity and drought. To get more insight into the role of Sl-ERF.B.3 in plant response to separate salinity and cold, a comparative study between wild type and two Sl-ERF.B.3 antisense transgenic tomato lines was achieved. Compared with wild type, Sl-ERF.B.3 antisense transgenic plants exhibited a salt stress dependent growth inhibition. This inhibition was significantly enhanced in shoots but reduced in roots, leading to an increased root to shoot ratio. Furthermore, the cold stress essay clearly revealed that introducing antisense Sl-ERF.B.3 in transgenic tomato plants reduces their cell injury and enhances their tolerance against 14 d of cold stress. All these results suggest that Sl-ERF.B.3 gene is involved in plant response to abiotic stresses and may play a role in the layout of stress symptoms under cold stress and in growth regulation under salinity.


Asunto(s)
Proteínas de Plantas/genética , Solanum lycopersicum/genética , Estrés Fisiológico/genética , Factores de Transcripción/genética , Secuencia de Aminoácidos , Sequías , Regulación de la Expresión Génica de las Plantas , Solanum lycopersicum/metabolismo , Datos de Secuencia Molecular , Fenotipo , Proteínas de Plantas/química , Proteínas de Plantas/metabolismo , Plantas Modificadas Genéticamente , Salinidad , Tolerancia a la Sal/genética , Alineación de Secuencia , Temperatura , Factores de Transcripción/química , Factores de Transcripción/metabolismo
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