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1.
Mikrobiologiia ; 85(5): 555-567, 2016 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-29364603

RESUMEN

High-throughput sequencing was used for comparative analysis of microbial communities of the water and mat from the Hoito-Gol mesothermal mineral sulfide spring (Eastern Sayan Mountains, Buryat Republic). Activity of microbial communities was determined. While both spring biotopes were dominated by members of three bacterial phyla, Proteobacteria, Bacteroidetes, and Firmicutes, they differed drastically in the composition of predominant phylotypes (at the genus level). In the water, the organisms wide spread in aquatic'environments were predominant, mostly aerobic chemoorganotrophs of the generaAcinetobacter, Pe- dobacter, and Flavobacterium. In the microbial mat,;the organisms actively involved in the sulfur cycle predominated, including sulfur-reducing bacteria Sulfurospirillum, sulfate-reducing deltaproteobacteria, sulfur- oxidizing chemoautotrophic bacteria, anoxygenic phototrophic bacteria of,the phyla Chloroflexi and Chloro- bi, as well as purple bacteria belonging to the Q-, P--, and y-Proteobacteria. Microbial mats of the spring exhibited higher phylogenetic diversity compared to high-temperature mats containing photosynthetic microorganisms.


Asunto(s)
Agua Subterránea/microbiología , Consorcios Microbianos/fisiología , Aguas Minerales/microbiología , Filogenia , ARN Ribosómico 16S/genética , Bacteroidetes/clasificación , Bacteroidetes/genética , Bacteroidetes/aislamiento & purificación , Biodiversidad , Campylobacteraceae/clasificación , Campylobacteraceae/genética , Campylobacteraceae/aislamiento & purificación , Deltaproteobacteria/clasificación , Deltaproteobacteria/genética , Deltaproteobacteria/aislamiento & purificación , Ecosistema , Firmicutes/clasificación , Firmicutes/genética , Firmicutes/aislamiento & purificación , Metano/química , Metano/metabolismo , Proteobacteria/clasificación , Proteobacteria/genética , Proteobacteria/aislamiento & purificación , Estaciones del Año , Siberia
2.
Mikrobiologiia ; 85(4): 421-435, 2016 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-28853774

RESUMEN

Drainage waters at the metal mining areas often have low pH and high content of dissolved metals due to oxidation of sulfide minerals. Extreme conditions limit microbial diversity in- such ecosystems. A drainage water microbial community (6.5'C, pH 2.65) in an open pit at the Sherlovaya Gora polymetallic open-cast mine (Transbaikal region, Eastern Siberia, Russia) was studied using metagenomic techniques. Metagenome sequencing provided information for taxonomic and functional characterization of the micro- bial community. The majority of microorganisms belonged to a single uncultured lineage representing a new Betaproteobacteria species of the genus Gallionella. While no.acidophiles are known among the cultured members of the family Gallionellaceae, similar 16S rRNA gene sequences were detected in acid mine drain- ages. Bacteria ofthe genera Thiobacillus, Acidobacterium, Acidisphaera, and Acidithiobacillus,-which are com- mon in acid mine drainage environments, were the minor components of the community. Metagenomic data were -used to determine the almost complete (-3.4 Mb) composite genome of the new bacterial. lineage desig- nated Candidatus Gallionella acididurans ShG14-8. Genome analysis revealed that Fe(II) oxidation probably involved the cytochromes localized on the outer membrane of the cell. The electron transport chain included NADH dehydrogenase, a cytochrome bc1 complex, an alternative complex III, and cytochrome oxidases of the bd, cbb3, and bo3 types. Oxidation of reduced sulfur compounds probably involved the Sox system, sul- fide-quinone oxidoreductase, adenyl sulfate reductase, and sulfate adenyltransferase. The genes required for autotrophic carbon assimilation via the Calvin cycle were present, while no pathway for nitrogen fixation was revealed. High numbers of RND metal transporters and P type ATPases were probably responsible for resis- tance to heavy metals. The new microorganism was an aerobic chemolithoautotroph of the group of psychrotolerant iron- and sulfur-oxidizing acidophiles of the family Gallionellaceae, which are common in acid mine drainages.


Asunto(s)
Gallionellaceae/genética , Genoma Bacteriano , Metagenoma , Consorcios Microbianos/genética , ARN Ribosómico 16S/genética , Aguas Residuales/microbiología , Acidithiobacillus/clasificación , Acidithiobacillus/genética , Acidithiobacillus/aislamiento & purificación , Acidithiobacillus/metabolismo , Acidobacteria/clasificación , Acidobacteria/genética , Acidobacteria/aislamiento & purificación , Acidobacteria/metabolismo , Adenosina Trifosfatasas/genética , Adenosina Trifosfatasas/metabolismo , Proteínas del Complejo de Cadena de Transporte de Electrón/genética , Proteínas del Complejo de Cadena de Transporte de Electrón/metabolismo , Complejo III de Transporte de Electrones/genética , Complejo III de Transporte de Electrones/metabolismo , Complejo IV de Transporte de Electrones/genética , Complejo IV de Transporte de Electrones/metabolismo , Gallionellaceae/clasificación , Gallionellaceae/aislamiento & purificación , Gallionellaceae/metabolismo , Expresión Génica , Humanos , Concentración de Iones de Hidrógeno , Hierro/metabolismo , Isoenzimas/genética , Isoenzimas/metabolismo , Metales/química , Metales/metabolismo , Minería , NADH Deshidrogenasa/genética , NADH Deshidrogenasa/metabolismo , Oxidación-Reducción , Oxidorreductasas/genética , Oxidorreductasas/metabolismo , Fotosíntesis/genética , Filogenia , Quinona Reductasas/genética , Quinona Reductasas/metabolismo , Siberia , Sulfato Adenililtransferasa/genética , Sulfato Adenililtransferasa/metabolismo , Thiobacillus/clasificación , Thiobacillus/genética , Thiobacillus/aislamiento & purificación , Thiobacillus/metabolismo
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