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Diabetic Kidney Disease (DKD), a frequent consequence of diabetes, has substantial implications for both morbidity and mortality rates, prompting the exploration of new metabolic biomarkers due to limitations in current methods like creatinine and albumin measurements. Pentraxin 3 (PTX3) shows promise for assessing renal inflammation in DKD. This study investigates how DKD metabolites could influence PTX3 expression through molecular docking, ADMET profiling, and dynamic simulation. Network and pathway analyses were conducted to explore metabolite interactions with DKD genes and their contributions to DKD pathogenesis. Thirty-three DKD-associated metabolites were screened, using pentoxifylline (PEN) as a reference. The pharmacokinetic properties of these compounds were evaluated through molecular docking and ADMET profiling. Molecular dynamics simulations over 200 ns assessed the stability of PTX3 (apo), the PRE-PTX3 complex, and PEN-PTX3 across multiple parameters. Cytoscape identified 1082 nodes and 1381 edges linking metabolites with DKD genes. KEGG pathway analysis underscored PTX3's role in inflammation. Molecular docking revealed pregnenolone sulfate (PRE) with the highest binding affinity (-6.25 kcal/mol), followed by hydrocortisone (-6.03 kcal/mol) and 2-arachidonoylglycerol (-5.92 kcal/mol), compared to PEN (-5.35 kcal/mol). ADMET profiling selected PRE for dynamic simulation alongside PEN. Analysis of RMSD, RMSF, RG, SASA, H-bond, PCA, FEL, and MM-PBSA indicated stable complex behavior over time. Our findings suggest that increasing PRE levels could be beneficial in managing DKD, potentially through isolating PRE from fungal sources, synthesizing it as dietary supplements, or enhancing endogenous PRE synthesis within the body.
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Pyridoxal-5'-phosphate (PLP) and derivatives of this cofactor enable a plethora of reactions in both enzyme-mediated and free-in-solution transformations. With few exceptions in each category, such chemistry has predominantly involved two-electron processes. This sometimes poses a significant challenge for using PLP to build tetrasubstituted carbon centers, especially when the reaction is reversible. The ability to access radical pathways is paramount to broadening the scope of reactions catalyzed by this coenzyme. In this study, we demonstrate the ability to access a radical PLP-based intermediate and engage this radical intermediate in a number of C-C bond-forming reactions. By selection of an appropriate oxidant, single-electron oxidation of the quinonoid intermediate can be achieved, which can subsequently be applied to C-C bond-forming reactions. Through this radical reaction pathway, we synthesized a series of α-tertiary amino acids and esters to investigate the substrate scope and identify nonproductive reaction pathways. Beyond the amino acid model system, we demonstrate that other classes of amine substrates can be applied in this reaction and that a range of small molecule reagents can serve as coupling partners to the semiquinone radical. We anticipate that this versatile semiquinone radical species will be central to the development of a range of novel reactions.
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Fumarate hydratase (FH) is a remarkable catalyst that decreases the free energy of the catalyzed reaction by 30 kcal mol-1, much larger than most exceptional enzymes with extraordinary catalytic rates. Two classes of FH are observed in nature: class-I and class-II, which have different folds, yet catalyze the same reversible hydration/dehydration reaction of the dicarboxylic acids fumarate/malate, with equal efficiencies. Using class-I FH from the hyperthermophilic archaeon Methanocaldococcus jannaschii (Mj) as a model along with comparative analysis with the only other available class-I FH structure from Leishmania major (Lm), we provide insights into the molecular mechanism of catalysis in this class of enzymes. The structure of MjFH apo-protein has been determined, revealing that large intersubunit rearrangements occur across apo- and holo-protein forms, with a largely preorganized active site for substrate binding. Site-directed mutagenesis of active site residues, kinetic analysis, and computational studies, including density functional theory (DFT) and natural population analysis, together show that residues interacting with the carboxylate group of the substrate play a pivotal role in catalysis. Our study establishes that an electrostatic network at the active site of class-I FH polarizes the substrate fumarate through interactions with its carboxylate groups, thereby permitting an easier addition of a water molecule across the olefinic bond. We propose a mechanism of catalysis in FH that occurs through transition-state stabilization involving the distortion of the electronic structure of the substrate olefinic bond mediated by the charge polarization of the bound substrate at the enzyme active site.
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Fumarato Hidratasa , Fumaratos , Fumarato Hidratasa/química , Cinética , Dominio Catalítico , CatálisisRESUMEN
BiVO4 is an important photoanode material for water oxidation, but its photoelectrochemistry regarding the triiodide/iodide redox couple is not well understood. Here, we use a combination of open circuit potential measurements, photoelectrochemical scans, and liquid surface photovoltage spectroscopy (SPS) to confirm that BiVO4/triiodide/iodide electrolyte contacts produce up to 0.55 V photovoltage under 23 mW/cm-2 illumination from a 470 nm LED. Inspired by these results, we construct FTO/BiVO4/KI(I2)aq/Pt sandwich photoelectrochemical cells from electrochemically grown 0.5 × 0.5 cm2 BiVO4 and Mo-doped BiVO4 films. Under AM 1.5 illumination, the devices have up to 0.22% energy conversion efficiency, 0.32 V photovoltage, and 1.8 mA cm-2 photocurrent. Based on SPS, hole transfer to iodide is sufficiently fast to prevent the competing water oxidation reaction. Mo doping increases the incident photon-to-current efficiency to up to 55% (at 425 nm under front illumination) by improving the BiVO4 conductivity, but this comes at the expense of a lower photovoltage resulting from recombination at the Mo defects and a detrimental Schottky junction at the interface with FTO. Additional photovoltage losses are caused by the offset between the BiVO4 valence band edge and the triiodide/iodide electrochemical potential and by electron back transfer to iodide at the FTO back contact (shunting). Overall, this work provides the first example of a BiVO4-liquid photovoltaic cell and an analysis of its limitations. Even though the larger band gaps of metal oxides constrain their solar energy conversion efficiency, their transparency to visible light and deep valence bands makes them suitable for tandem photovoltaic devices.
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Existing methodologies for metal-catalyzed cross-couplings typically rely on preinstallation of reactive functional groups on both reaction partners. In contrast, C-H functionalization approaches offer promise in simplification of the requisite substrates; however, challenges from low reactivity and similar reactivity of various C-H bonds introduce considerable complexity. Herein, the oxidative cross dehydrogenative coupling of α-amino C(sp3)-H bonds and aldehydes to produce ketone derivatives is described using an unusual reaction medium that incorporates the simultaneous use of di-tert-butyl peroxide as an oxidant and zinc metal as a reductant. The method proceeds with a broad substrate scope, representing an attractive approach for accessing α-amino ketones through the formal acylation of C-H bonds α to nitrogen in N-heterocycles. A combination of experimental investigation and computational modeling provides evidence for a mechanistic pathway involving cross-selective nickel-mediated cross-coupling of α-amino radicals and acyl radicals.
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It is believed that human papilloma virus infection (HPV), which is caused by the DNA virus, is the most prominent factor contributing to sexually transmitted disease (STD) in the world, with males having a prevalence rate of 3.5%-45% while that women are 2%-44%. Infertility is a rising problem on a global basis, affecting anywhere from 10% to 30% of couples who have reached reproductive age. This study aims to investigate the existing research on HPV, its connection to male infertility, and how it could be a helpful tool for medical professionals managing HPV in the context of reproductive health care. Infection with HPV has been identified as a risk factor for several spontaneous abortions; however, there is a lack of evidence on how HPV influences individuals undergoing assisted reproductive technology (ART) in terms of live births. The significance of the immune response to HPV-infected male reproductive system cells and its effect on embryos, as well as the oxidative stress generated by high-risk HPV DNA damage and genomic instability, is discussed in this review. Further, the association between male individuals infected with HPV and asthenozoospermia should provide a compelling case for vaccinating young people against HPV.
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Infertilidad Masculina , Infecciones por Papillomavirus , Embarazo , Humanos , Masculino , Femenino , Adolescente , Infecciones por Papillomavirus/complicaciones , Infecciones por Papillomavirus/epidemiología , Virus del Papiloma Humano , Salud Reproductiva , Papillomaviridae/genéticaRESUMEN
In addition to the COVID-19 waves, the globe is facing global monkeypox (MPX) outbreak. MPX is an uncommon zoonotic infection characterized by symptoms similar to smallpox. It is caused by the monkeypox virus (MPXV), a double-stranded DNA virus that belongs to the genus Orthopoxvirus (OPXV). MPXV, which causes human disease, has been confined to Africa for many years, with only a few isolated cases in other areas. Outside of Africa, the continuing MPXV outbreak in multiple countries in 2022 is the greatest in recorded history. The current outbreak, with over 10 000 confirmed cases in over 50 countries between May and July 2022, demonstrates that MPXV may travel rapidly among humans and pose a danger to human health worldwide. The rapid spread of such outbreaks in recent times has elevated MPX to the status of a rising zoonotic disease with significant epidemic potential. While the MPXV is not as deadly or contagious as the variola virus that causes smallpox, it poses a threat because it could evolve into a more potent human pathogen. This review assesses the potential threat to the human population and provides a brief overview of what is currently known about this reemerging virus. By analyzing the biological effects of MPXV on human health, its shifting epidemiological footprint, and currently available therapeutic options, this review has presented the most recent insights into the biology of the virus. This study also clarifies the key potential causes that could be to blame for the present MPX outbreak and draw attention to major research questions and promising new avenues for combating the current MPX epidemic.
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COVID-19 , Mpox , Orthopoxvirus , Viruela , Animales , Humanos , Monkeypox virus/genética , Mpox/epidemiología , Zoonosis/epidemiologíaRESUMEN
Solitons are highly confined, propagating waves that arise from nonlinear feedback in natural (e.g., shallow and confined waters) and engineered systems (e.g., optical wave propagation in fibers). Solitons have recently been observed in thin films of liquid crystals (LCs) in the presence of ac electric fields, where localized LC director distortions arise and propagate due to flexoelectric polarization. Here we report that collisions between LC solitons and interfaces to isotropic fluids can generate a range of interfacial hydrodynamic phenomena. We find that single solitons can either generate single droplets or, alternatively, form jets of LC that subsequently break up into organized assemblies of droplets. We show that the influence of key parameters, such as electric field strength, LC film thickness, and LC-oil interfacial tension, map onto a universal state diagram that characterizes the transduction of soliton flexoelectric energy into droplet interfacial energy. Overall, we reveal that solitons in LCs can be used to focus the energy of nonlocalized electric fields to generate a new class of nonlinear electrohydrodynamic effects at fluid interfaces, including jetting and emulsification.
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Solitons in liquid crystals have generated considerable interest. Several hypotheses of varying complexity have been advanced to explain how they arise, but consensus has not emerged yet about the underlying forces responsible for their formation or their structure. In this work, we present a minimal model for solitons in achiral nematic liquid crystals, which reveals the key requirements needed to generate them in the absence of added charges. These include a surface inhomogeneity, consisting of an adsorbed particle capable of producing a twist, flexoelectricity, dielectric contrast, and an applied ac electric field that can couple to the director's orientation. Our proposed model is based on a tensorial representation of a confined liquid crystal, and it predicts the formation of "butterfly" structures, quadrupolar in character, in regions of a slit channel where the director is twisted by the surface imperfection. As the applied electric field is increased, solitons (or "bullets") become detached from the wings of the butterfly, and then propagate rapidly throughout the system. The main observations that emerge from the model, including the formation and structure of butterflies, bullets, and stripes, as well as the role of surface inhomogeneity and the strength of the applied field, are consistent with experimental findings presented here for nematic LCs confined between two chemically treated parallel plates.
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In this work, we computationally investigated nickelocene and chromocene-coupled linear carbon chains. The designed systems are [Ni]-Cn-Ni], [Cr]-Cn-[Cr] and [Cr]-Cn-[Ni] (n = 3 to 9), where [Ni], [Cr] and Cn represent nickelocene (NiCp2, Cp = cyclopentadienyl), chromocene (CrCp2) and linear carbon chains respectively. The magnetic properties of these systems were computationally investigated by a density functional theory-based method. Ferromagnetic ground states were observed for [Ni]-Cn-[Ni] and [Cr]-Cn-[Cr] complexes for couplers with odd numbers of carbon atoms (n = 3, 5, 7 and 9), whereas antiferromagnetic ground states result for couplers with even numbers of carbon atoms (n = 4, 6 and 8). However, a totally opposite trend is followed by [Cr]-Cn-[Ni] complexes due to the spin polarization inside the chromocene. The calculation and study of magnetic anisotropy for all the ferromagnetic complexes suggest that the [Ni]-Cn-[Ni] complexes with coupler of odd number of carbon atoms will be suitable for the synthesis of single-molecule magnets among the designed complexes.
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Here we report the use of defects in ordered solvents to form, manipulate, and characterize individual molecular assemblies of either small-molecule amphiphiles or polymers. The approach exploits nanoscopic control of the structure of nematic solvents (achieved by the introduction of topological defects) to trigger the formation of molecular assemblies and the subsequent manipulation of defects using electric fields. We show that molecular assemblies formed in solvent defects slow defect motion in the presence of an electric field and that time-of-flight measurements correlate with assembly size, suggesting methods for the characterization of single assemblies of molecules. Solvent defects are also used to transport single assemblies of molecules between solvent locations that differ in composition, enabling the assembly and disassembly of molecular "nanocontainers". Overall, our results provide new methods for studying molecular self-assembly at the single-assembly level and new principles for integrated nanoscale chemical systems that use solvent defects to transport and position molecular cargo.
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Polímeros , Polímeros/química , Solventes/químicaRESUMEN
Movement of a three-dimensional solid at an air-water interface is strongly influenced by the extrinsic interactions between the solid and the water. The finite thickness and volume of a moving solid causes capillary interactions and water-induced drag. In this Letter, we report the fabrication and dynamical imaging of freely floating MoS2 solids on water, which minimizes such extrinsic effects. For this, we delaminate a synthesized wafer-scale monolayer MoS2 onto a water surface, which shows negligible height difference across water and MoS2. Subsequently patterning by a laser generates arbitrarily shaped MoS2 with negligible in-plane strain. We introduce photoswitchable surfactants to exert a lateral force to floating MoS2 with a spatiotemporal control. Using this platform, we demonstrate a variety of two-dimensional mechanical systems that show reversible shape changes. Our experiment provides a versatile approach for designing and controlling a large array of atomically thin solids on water for intrinsically two-dimensional dynamics and mechanics.
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AC electric fields cause three-dimensional orientational fluctuations (solitons) to form and rapidly propagate in confined films of liquid crystals (LCs), offering the basis of a new class of active soft matter (e.g., for accelerating mixing and transport processes in microscale chemical systems). How surface chemistry impacts the formation and trajectories of solitons, however, is not understood. Here, we show that self-assembled monolayers (SAMs) formed from alkanethiols on gold, which permit precise control over surface chemistry, are electrochemically stable over voltage and frequency windows (<100 V; 1 kHz) that lead to soliton formation in achiral nematic films of 4'-butyl-4-heptyl-bicyclohexyl-4-carbonitrile (CCN-47). By comparing soliton formation in LC films confined by SAMs formed from hexadecanethiol (C16SH) or pentadecanethiol (C15SH), we reveal that the electric field required for soliton formation increases with the LC anchoring energy: surfaces patterned with regions of C16SH and C15SH SAMs thus permit spatially controlled creation and annihilation of solitons necessary to generate a net flux of solitons. We also show that solitons propagate in orthogonal directions when confined by obliquely deposited gold films decorated with SAMs formed from C16SH or C15SH and that the azimuthal direction of propagation of solitons within achiral LC films possessing surface-induced twists is not unique but reflects variation in the spatial location of the solitons across the thickness of the twisted LC film. Finally, discontinuous changes in LC orientation induced by patterned surface anchoring lead to a range of new soliton behaviors including refraction, reflection, and splitting of solitons at the domain boundaries. Overall, our results provide new approaches for the controlled generation and programming of solitons with complex and precise trajectories, principles that inform new designs of chemical soft matter.
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The lack of directionality and the long-range nature of Coulomb interactions have been a bottleneck to achieve chemically precise C-H activation using ion-pairs. Recent report by Phipps and co-workers of the ion-pair-directed regioselective Iridium-catalyzed borylation opens a new direction toward harnessing noncovalent interactions for C-H activation. In this article, the mechanism and specific role of ion-pairing are investigated using density functional theory (DFT). Computational studies reveal that meta C-H activation is kinetically more favorable than the para analogue due to stronger electrostatic interactions between the ion-pairs in closer proximity [d(NMe3+···SO3-)TSP1m = 3.93 Å versus d(NMe3+···SO3-)TSP1p = 4.30 Å]. The electrostatic interactions overwhelm the Pauli repulsion and distortion interactions incurred in bringing the oppositely charged ions in close contact for the rate-limiting meta transition state (TSP1m). Multiple linear regression shows that the free energies of activation correlate well with descriptors like the charge densities on the meta carbon and Ir atom along with that on the cation and anion with R2 = 0.74. Tuned range-separated DFT calculations demonstrate accurately the localization of charge separation in the reactant complex and transition state for the meta selectivity.
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Although the construction of axially chiral C-C bonds leading to the atroposelective synthesis of biaryls and allied compounds are well-known, the related synthesis of compounds bearing axially chiral C-N bonds are relatively rare. Described herein is the N-heterocyclic carbene-catalyzed atroposelective synthesis of N-aryl succinimides having an axially chiral C-N bond via the desymmetrization of N-aryl maleimides. The NHC involved intermolecular Stetter-aldol cascade of dialdehydes with prochiral N-aryl maleimides followed by oxidation afforded N-aryl succinimides in good yields and ee values. Preliminary studies on rotation barrier for the C-N bond, the temperature dependence, and detailed DFT studies on mechanism are also provided.
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Mixed-surfactant systems consisting of secondary alcohol ethoxylates and anionic sulfonates are evaluated as wettability alteration agents for enhanced oil recovery. The cloud points of the nonionic surfactants are raised by the addition of the sulfonates. The oil/water interfacial tension and contact angles of oil on initially oil-wet calcite are reported at different temperatures and surfactant compositions. Adsorption experiments are performed for select mixed systems at high temperatures. The extent of the increase in the cloud point, changes in the contact angle, and adsorption are influenced by co-surfactants, surfactant concentrations, and temperatures. Mixed surfactant systems were identified which modified the oil-wet surface to a water-wet surface with final contact angles as low as 70°. Mixed surfactants exhibit a linear trend in adsorption and wettability alteration with the thermodynamic descriptor of cloud point temperature difference, which has been used previously for single surfactants. These findings enable the design of surfactant formulations for wettability alteration in high temperature, high salinity reservoirs.
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Donor-acceptor Stenhouse adducts (DASA) are new-generation photochromic compounds discovered recently. DASA exist normally in open form (blue/violet) and readily convert to cyclic (light yellow/colorless) zwitterionic form reversibly in the presence of green light in toluene/dioxane. In aqueous medium, the open form is not stable and converts to the cyclic zwitterionic form irreversibly. We report here a new self-assembled Pd8 molecular vessel (MV) that can stabilize and store the open form of DASA even in aqueous medium. Reaction of the 90° acceptor cis-(tmeda)Pd(NO3)2 (M) [tmeda = N, N, N', N'-tetramethylethane-1,2-diamine] with a symmetric tetraimidazole donor (L, 3,3',5,5'-tetra(1 H-imidazol-1-yl)-1,1'-biphenyl) in a 2:1 molar ratio yielded a water-soluble [8+4] self-assembled M8L4 molecular barrel (MV). This barrel (MV) is found to be a potential molecular vessel to store and stabilize the open forms of DASA in aqueous medium over the more stable zwitterionic cyclic form, while in the absence of the barrel the same DASA exist in cyclic zwitterionic form in aqueous medium. The hydrophobic interaction between the cavity and the open form of DASA molecules benefits reaching an out-of-equilibrium or reverse equilibrium state in aqueous medium. The presence of excess MV could even drive the conversion of the stable cyclic form to the open form in aqueous medium. The host-guest complex is stable upon irradiating with green light. To the best of our knowledge, this is the first successful attempt to stabilize the open form of DASA molecules in aqueous medium and the first report on the fate of DASA in a confined space discrete molecular architecture. Furthermore, the molecular vessel has been utilized for catalytic Michael addition reactions of a series of nitrostyrene derivatives with 1,3-indandione in aqueous medium.
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The process of selecting an effective surfactant for wettability alteration is dependent on a number of factors, including mineral type, temperature, salinity, and nature of adsorbed oil and ultimately how the molecular structure of the surfactant interacts with all of these. Here, we present an experimental study of the effectiveness of nonionic surfactants with different hydrophobic groups and different lengths of hydrophilic ethylene oxide oligomers. The surfactants selected alter the wettability of the rock primarily by acting on the water-rock and oil-rock interfaces. The dynamics of wettability alteration is measured by the evolution of contact angles of oil drops on initially oil-wet surfaces at three different temperatures. Wettability alteration is found to be enhanced by surfactants with shorter hydrophilic units and increased temperatures. Experimental observations are efficiently summarized by a few thermodynamic and kinetic parameters. Qualitative experiments are performed to study surfactant-induced dewetting of oil films. Finally, a model involving "coating" and "sweeping" mechanisms is proposed to explain the mechanism of surfactant action.
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Diabetic kidney disease (DKD) is a major microvascular complication of diabetes mellitus (DM) that poses a serious risk as it can lead to end-stage renal disease (ESRD). DKD is linked to changes in the diversity, composition, and functionality of the microbiota present in the gastrointestinal tract. The interplay between the gut microbiota and the host organism is primarily facilitated by metabolites generated by microbial metabolic processes from both dietary substrates and endogenous host compounds. The production of numerous metabolites by the gut microbiota is a crucial factor in the pathogenesis of DKD. However, a comprehensive understanding of the precise mechanisms by which gut microbiota and its metabolites contribute to the onset and progression of DKD remains incomplete. This review will provide a summary of the current scenario of metabolites in DKD and the impact of these metabolites on DKD progression. We will discuss in detail the primary and gut-derived metabolites in DKD, and the mechanisms of the metabolites involved in DKD progression. Further, we will address the importance of metabolomics in helping identify potential DKD markers. Furthermore, the possible therapeutic interventions and research gaps will be highlighted.
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Diabetes Mellitus , Nefropatías Diabéticas , Fallo Renal Crónico , Humanos , Nefropatías Diabéticas/metabolismo , Biomarcadores , MetabolómicaRESUMEN
Type 2 Diabetes Mellitus (T2DM) presents a substantial health concern on a global scale, driving the search for innovative therapeutic strategies. Phytochemicals from medicinal plants, particularly Ocimum tenuiflorum (Holy Basil), have garnered attention for their potential in T2DM management. The increased focus on plant-based treatments stems from their perceived safety profile, lower risk of adverse effects, and the diverse range of bioactive molecules they offer, which can target multiple pathways involved in T2DM. Computational techniques explored the binding interactions between O. tenuiflorum phytochemicals and Human Omentin-1, a potential T2DM target. ADMET evaluation and targeted docking identified lead compounds: Luteolin (-4.84 kcal/mol), Madecassic acid (-4.12 kcal/mol), Ursolic acid (-5.91 kcal/mol), Stenocereol (-5.59 kcal/mol), and Apigenin (-4.64 kcal/mol), to have a better binding affinity to target protein compared to the control drug, Metformin (-2.01 kcal/mol). Subsequent molecular dynamics simulations evaluated the stability of Stenocereol, Luteolin, and Metformin complexes for 200 nanoseconds, analysing RMSD, RMSF, RG, SASA, PCA, FEL, and MM-PBSA parameters. Results indicated Stenocereol's strong binding affinity with Omentin-1, suggesting its potential as a potent therapeutic agent for T2DM management. These findings lay the groundwork for further experimental validation and drug discovery endeavours.