Building accelerated plant breeding pipelines: Screening to evaluate lima bean resistance to root-knot nematode in diverse inbred lines and segregating breeding populations.

Lima beans (Phaseolus lunatus) are a cornerstone crop of Delaware's processing vegetable industry. Root-knot nematodes (RKN; Meloidogyne spp.) cause galling of root systems which severely reduces yield. Durable host resistance is an effective management strategy for RKN, but availability of resistant lima bean cultivars is limited. To overcome these challenges, breeding pipelines must simultaneously advance pre-commercial lines and identify new resistance sources with potential for incorporation into the breeding program. Inoculated field trials were conducted in 2021-2022 to evaluate three M. incognita resistant, pre-commercial experimental lines for resistance traits and yield potential in comparison to commercial standards, 'Cypress' and 'C-elite Select'. DE1306635 had the highest yield and reduced galling and reproduction compared to 'Cypress', and is a candidate for commercial release. To continue the breeding pipeline, 256 lima bean inbred accessions from around the world were assessed from 2022-2023 in greenhouse and field screenings to identify novel sources of resistance in the lima bean gene pool. This method allows for evaluation and/or advancement of three generations per year. The full panel was initially evaluated for root galling and 60 accessions were selected for additional field and greenhouse screening: 25 large- and 25 small-seeded with the lowest gall ratings, 5 high-gall controls, and 5 commercial standards. Seven accessions with reduced M. incognita galling and reproduction were identified, including two known resistant lines and five newly identified genotypes. The resistance carried by these genotypes will be further characterized to assess their potential use in lima bean RKN resistance breeding.

Genome assembly of a Mesoamerican derived variety of lima bean: a foundational cultivar in the Mid-Atlantic USA.

Lima bean, Phaseolus lunatus, is closely related to common bean and is high in fiber and protein, with a low glycemic index. Lima bean is widely grown in the state of Delaware, where late summer and early fall weather are conducive to pod production. The same weather conditions also promote diseases such as pod rot and downy mildew, the latter of which has caused previous epidemics. A better understanding of the genes underlying resistance to this and other pathogens is needed to keep this industry thriving in the region. Our current study sought to sequence, assemble, and annotate a commercially available cultivar called Bridgeton, which could then serve as a reference genome, a basis of comparison to other Phaseolus taxa, and a resource for the identification of potential resistance genes. Combined efforts of sequencing, linkage, and comparative analysis resulted in a 623 Mb annotated assembly for lima bean, as well as a better understanding of an evolutionarily dynamic resistance locus in legumes.