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Molecules ; 25(21)2020 Nov 02.
Artículo en Inglés | MEDLINE | ID: mdl-33147821

RESUMEN

With an increasing fatality rate, severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) has emerged as a promising threat to human health worldwide. Recently, the World Health Organization (WHO) has announced the infectious disease caused by SARS-CoV-2, which is known as coronavirus disease-2019 (COVID-2019), as a global pandemic. Additionally, the positive cases are still following an upward trend worldwide and as a corollary, there is a need for a potential vaccine to impede the progression of the disease. Lately, it has been documented that the nucleocapsid (N) protein of SARS-CoV-2 is responsible for viral replication and interferes with host immune responses. We comparatively analyzed the sequences of N protein of SARS-CoV-2 for the identification of core attributes and analyzed the ancestry through phylogenetic analysis. Subsequently, we predicted the most immunogenic epitope for the T-cell and B-cell. Importantly, our investigation mainly focused on major histocompatibility complex (MHC) class I potential peptides and NTASWFTAL interacted with most human leukocyte antigen (HLA) that are encoded by MHC class I molecules. Further, molecular docking analysis unveiled that NTASWFTAL possessed a greater affinity towards HLA and also available in a greater range of the population. Our study provides a consolidated base for vaccine design and we hope that this computational analysis will pave the way for designing novel vaccine candidates.


Asunto(s)
Betacoronavirus/inmunología , Proteínas de la Nucleocápside/inmunología , Secuencia de Aminoácidos , Linfocitos T CD8-positivos/inmunología , Vacunas contra la COVID-19 , Infecciones por Coronavirus/inmunología , Infecciones por Coronavirus/prevención & control , Proteínas de la Nucleocápside de Coronavirus , Hipersensibilidad a las Drogas/inmunología , Epítopos de Linfocito B/inmunología , Epítopos de Linfocito T/inmunología , Antígenos de Histocompatibilidad Clase I , Humanos , Modelos Moleculares , Simulación del Acoplamiento Molecular , Proteínas de la Nucleocápside/química , Fragmentos de Péptidos/inmunología , Fosfoproteínas , Estructura Secundaria de Proteína , SARS-CoV-2 , Vacunas Virales/inmunología
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