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1.
RNA ; 14(9): 1895-906, 2008 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-18648068

RESUMEN

Pseudouridine synthase 1 (Pus1p) is an enzyme that converts uridine to Pseudouridine (Psi) in tRNA and other RNAs in eukaryotes. The active site of Pus1p is composed of stretches of amino acids that are highly conserved and it is hypothesized that mutation of select residues would impair the enzyme's ability to catalyze the formation of Psi. However, most mutagenesis studies have been confined to substitution of the catalytic aspartate, which invariably results in an inactive enzyme in all Psi synthases tested. To determine the requirements for particular amino acids at certain absolutely conserved positions in Pus1p, three residues (R116, Y173, R267) that correspond to amino acids known to compose the active site of TruA, a bacterial Psi synthase that is homologous to Pus1p, were mutated in human Pus1p (hPus1p). The effects of those mutations were determined with three different in vitro assays of pseudouridylation and several tRNA substrates. Surprisingly, it was found that each of these components of the hPus1p active site could tolerate certain amino acid substitutions and in fact most mutants exhibited some activity. The most active mutants retained near wild-type activity at positions 27 or 28 in the substrate tRNA, but activity was greatly reduced or absent at other positions in tRNA readily modified by wild-type hPus1p.


Asunto(s)
Secuencia Conservada , Hidroliasas/genética , Hidroliasas/metabolismo , ARN de Transferencia/metabolismo , Secuencia de Aminoácidos/genética , Sustitución de Aminoácidos , Animales , Arginina/química , Arginina/genética , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Sitios de Unión/genética , Humanos , Ratones , Datos de Secuencia Molecular , Mutagénesis , Mutación , Conformación de Ácido Nucleico , Especificidad por Sustrato , Tirosina/química , Tirosina/genética
2.
Mol Genet Metab ; 97(4): 297-304, 2009 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-19482502

RESUMEN

The homoplasmic mitochondrial A1555G mutation in the 12S rRNA gene leads to a mitochondrial translation disorder associated with deafness. The absence of disease in non-cochlear tissues in all patients, and in the cochlea in some patients, is not well understood. We used a system-based approach, including whole genome expression and biological function analysis, to elucidate the pathways underlying tissue specificity and clinical severity of this condition. Levels of over 48K RNA transcripts from EBV-transformed lymphoblasts of deaf and hearing individuals with the A1555G mutation and controls were obtained. Differentially expressed transcripts were functionally grouped using gene set enrichment analysis. Over 50 RNA binding proteins were differentially expressed between deaf and hearing individuals with the A1555G mutation (P-value of 2.56E-7), confirming previous genetic data implicating this pathway in the determination of the severity of hearing loss. Unexpectedly, the majority of cytoplasmic ribosomal genes were up-regulated in a coordinated fashion in individuals with the A1555G mutation versus controls (P-value of 3.91E-135). This finding was verified through real time RT-PCR, and through measuring of protein levels by flow cytometry. Analysis of expression levels of other differentially expressed genes suggests that this coordinated over-expression of cytoplasmic ribosomal proteins might occur through the Myc/Max pathway. We propose that expression levels of RNA binding proteins help determine the severity of the cochlear phenotype, and that coordinated up-regulation of the cytoplasmic translation apparatus operates as a compensation mechanism in unaffected tissues of patients with maternal deafness associated with the A1555G mutation.


Asunto(s)
Sordera/genética , Pérdida Auditiva/genética , ARN Ribosómico/genética , Proteínas Ribosómicas/genética , Femenino , Perfilación de la Expresión Génica , Humanos , Análisis de Secuencia por Matrices de Oligonucleótidos , Fenotipo , ARN/genética , ARN/metabolismo , ARN Mitocondrial , Proteínas de Unión al ARN/genética , Proteínas Ribosómicas/metabolismo
3.
Mol Endocrinol ; 21(3): 686-99, 2007 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-17170069

RESUMEN

It was previously shown that mouse Pus1p (mPus1p), a pseudouridine synthase (PUS) known to modify certain transfer RNAs (tRNAs), can also bind with nuclear receptors (NRs) and function as a coactivator through pseudouridylation and likely activation of an RNA coactivator called steroid receptor RNA activator (SRA). Use of cell extract devoid of human Pus1p activity derived from patients with mitochondrial myopathy and sideroblastic anemia, however, still showed SRA-modifying activity suggesting that other PUS(s) can also target this coactivator. Here, we show that related mPus3p, which has a different tRNA specificity than mPus1p, also serves as a NR coactivator. However, in contrast to mPus1p, it does not stimulate sex steroid receptor activity, which is likely due to lack of binding to this class of NRs. As expected from their tRNA activities, in vitro pseudouridylation assays show that mPus3p and mPus1p modify different positions in SRA, although some may be commonly targeted. Interestingly, the order in which these enzymes modify SRA determines the total number of pseudouridines. mPus3p and SRA are mainly cytoplasmic; however, mPus3p and SRA are also localized in distinct nuclear subcompartments. Finally, we identified an in vivo modified position in SRA, U206, which is likely a common target for both mPus1p and mPus3p. When U206 is mutated to A, SRA becomes hyperpseudouridylated in vitro, and it acquires dominant-negative activity in vivo. Thus, Pus1p- and Pus3p-dependent pseudouridylation of SRA is a highly complex posttranscriptional mechanism that controls a coactivator-corepressor switch in SRA with major consequences for NR signaling.


Asunto(s)
Hidroliasas/fisiología , Seudouridina/metabolismo , ARN no Traducido/metabolismo , Receptores Citoplasmáticos y Nucleares/metabolismo , Células 3T3 , Anemia Sideroblástica/patología , Animales , Secuencia de Bases , Células Cultivadas , Humanos , Hidroliasas/metabolismo , Ratones , Miopatías Mitocondriales/patología , Modelos Biológicos , Datos de Secuencia Molecular , Conformación de Ácido Nucleico , ARN Largo no Codificante , Receptores de Ácido Retinoico/genética , Transducción de Señal , Distribución Tisular
4.
BMC Med Genet ; 8: 81, 2007 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-18154640

RESUMEN

BACKGROUND: Mitochondrial DNA (mtDNA) mutations account for at least 5% of cases of postlingual, nonsyndromic hearing impairment. Among them, mutation A1555G is frequently found associated with aminoglycoside-induced and/or nonsyndromic hearing loss in families presenting with extremely variable clinical phenotypes. Biochemical and genetic data have suggested that nuclear background is the main factor involved in modulating the phenotypic expression of mutation A1555G. However, although a major nuclear modifying locus was located on chromosome 8p23.1 and regardless intensive screening of the region, the gene involved has not been identified. METHODS: With the aim to gain insights into the factors that determine the phenotypic expression of A1555G mutation, we have analysed in detail different genetic and genomic elements on 8p23.1 region (DEFA3 gene absence, CLDN23 gene and MRPS18CP2 pseudogene) in a group of 213 A1555G carriers. RESULTS: Family based association studies identified a positive association for a polymorphism on MRPS18CP2 and an overrepresentation of DEFA3 gene absence in the deaf group of A1555G carriers. CONCLUSION: Although none of the factors analysed seem to have a major contribution to the phenotype, our findings provide further evidences of the involvement of 8p23.1 region as a modifying locus for A1555G 12S rRNA gene mutation.


Asunto(s)
Cromosomas Humanos Par 8 , ADN Mitocondrial/genética , Pérdida Auditiva Sensorineural/genética , Mutación , ARN Ribosómico/genética , Alelos , Mapeo Cromosómico , Análisis Mutacional de ADN , Heterocigoto , Humanos , Familia de Multigenes , Seudogenes , España , alfa-Defensinas/genética
5.
Nucleic Acids Res ; 32(3): 867-77, 2004.
Artículo en Inglés | MEDLINE | ID: mdl-14960712

RESUMEN

We report here the biochemical characterization of the deafness-associated mitochondrial tRNA(Ser(UCN)) T7511C mutation, in conjunction with homoplasmic ND1 T3308C and tRNA(Ala) T5655C mutations using cybrids constructed by transferring mitochondria from lymphoblastoid cell lines derived from an African family into human mtDNA-less (rho degrees ) cells. Three cybrids derived from an affected matrilineal relative carrying the homoplasmic T7511C mutation, exhibited approximately 75% decrease in the tRNA(Ser(UCN)) level, compared with three control cybrids. This amount of reduction in the tRNA(Ser(UCN)) level is below a proposed threshold to support a normal rate of mitochondrial protein synthesis in lymphoblastoid cell lines. This defect is likely a primary contributor to approximately 52% reduction in the rate of mitochondrial protein synthesis and marked defects in respiration and growth properties in galactose-containing medium. Interestingly, the T5655C mutation produces approximately 50% reduction in the tRNA(Ala) level in mutant cells. Strikingly, the T3308C mutation causes a significant decrease both in the amount of ND1 mRNA and co-transcribed tRNA(Leu(UUR)) in mutant cells. Thus, mitochondrial dysfunctions caused by the T5655C and T3308C mutations may modulate the phenotypic manifestation of the T7511C mutation. These observations imply that a combination of the T7511C mutation with two mtDNA mutations accounts for the high penetrance of deafness in this family.


Asunto(s)
ADN Mitocondrial/genética , Sordera/genética , Pérdida Auditiva Sensorineural/genética , Mutación Puntual , ARN de Transferencia de Serina/genética , África , Secuencia de Bases , División Celular/efectos de los fármacos , Línea Celular , Respiración de la Célula , Sordera/metabolismo , Galactosa/farmacología , Glucosa/farmacología , Pérdida Auditiva Sensorineural/metabolismo , Humanos , Proteínas Mitocondriales/biosíntesis , Datos de Secuencia Molecular , NADH Deshidrogenasa/biosíntesis , NADH Deshidrogenasa/genética , Linaje , ARN Mensajero/metabolismo , ARN de Transferencia de Alanina/metabolismo , ARN de Transferencia de Leucina/metabolismo , ARN de Transferencia de Serina/metabolismo
6.
Sci Rep ; 6: 26202, 2016 05 20.
Artículo en Inglés | MEDLINE | ID: mdl-27197761

RESUMEN

Mitochondrial myopathy with lactic acidosis and sideroblastic anemia (MLASA) is an oxidative phosphorylation disorder, with primary clinical manifestations of myopathic exercise intolerance and a macrocytic sideroblastic anemia. One cause of MLASA is recessive mutations in PUS1, which encodes pseudouridine (Ψ) synthase 1 (Pus1p). Here we describe a mouse model of MLASA due to mutations in PUS1. As expected, certain Ψ modifications were missing in cytoplasmic and mitochondrial tRNAs from Pus1(-/-) animals. Pus1(-/-) mice were born at the expected Mendelian frequency and were non-dysmorphic. At 14 weeks the mutants displayed reduced exercise capacity. Examination of tibialis anterior (TA) muscle morphology and histochemistry demonstrated an increase in the cross sectional area and proportion of myosin heavy chain (MHC) IIB and low succinate dehydrogenase (SDH) expressing myofibers, without a change in the size of MHC IIA positive or high SDH myofibers. Cytochrome c oxidase activity was significantly reduced in extracts from red gastrocnemius muscle from Pus1(-/-) mice. Transmission electron microscopy on red gastrocnemius muscle demonstrated that Pus1(-/-) mice also had lower intermyofibrillar mitochondrial density and smaller mitochondria. Collectively, these results suggest that alterations in muscle metabolism related to mitochondrial content and oxidative capacity may account for the reduced exercise capacity in Pus1(-/-) mice.


Asunto(s)
Hidroliasas/deficiencia , Síndrome MELAS/patología , Músculos/patología , Músculos/fisiología , Animales , Modelos Animales de Enfermedad , Histocitoquímica , Ratones , Ratones Noqueados , Microscopía Electrónica de Transmisión
7.
Hear Res ; 209(1-2): 76-85, 2005 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-16055286

RESUMEN

Mice, in which the genetics can be manipulated and the life span is relatively short, enable evaluation of the effects of specific gene expression on cochlear degeneration over time. Antioxidant enzymes such as Cu/Zn superoxide dismutase (SOD1) protect cells from toxic, reactive oxygen species and may be involved in age-related degeneration. The effects of SOD1 deletion and over-expression on the cochlea were examined in Sod1-null mice, Sod1 transgenic mice and in age- and genetics-matched controls. Auditory brainstem responses (ABR) were measured and cochleae were histologically examined. The absence of SOD1 resulted in hearing loss at an earlier age than in wildtype or heterozygous mice. The cochleae of the null mice had severe spiral ganglion cell degeneration at 7-9 months of age. The stria vascularis in the aged, null mice was thinner than in the heterozygous or wildtype mice. Over-expression of SOD1 did not protect against hearing loss except at 24 months of age. In conclusion, SOD1 seems important for survival of cochlear neurons and the stria vascularis, however even half the amount is sufficient and an over abundance does not provide much protection from age-related hearing loss.


Asunto(s)
Envejecimiento/metabolismo , Pérdida Auditiva/enzimología , Superóxido Dismutasa/deficiencia , Superóxido Dismutasa/genética , Envejecimiento/patología , Análisis de Varianza , Animales , Tronco Encefálico/fisiología , Cóclea/enzimología , Cóclea/metabolismo , Cóclea/patología , Femenino , Expresión Génica , Pérdida Auditiva/patología , Masculino , Ratones , Ratones Noqueados , Ratones Transgénicos , Órgano Espiral/enzimología , Órgano Espiral/metabolismo , Órgano Espiral/patología , Presbiacusia/fisiopatología , Ganglio Espiral de la Cóclea/enzimología , Ganglio Espiral de la Cóclea/metabolismo , Ganglio Espiral de la Cóclea/patología , Estría Vascular/enzimología , Estría Vascular/metabolismo , Estría Vascular/patología , Superóxido Dismutasa-1
8.
J Child Neurol ; 20(5): 449-52, 2005 May.
Artículo en Inglés | MEDLINE | ID: mdl-15971356

RESUMEN

We report the seventh case of autosomal recessive inherited mitochondrial myopathy, lactic acidosis, and sideroblastic anemia The patient, a product of consanguineous Persian Jews, had the association of mental retardation, dysmorphic features, lactic acidosis, myopathy, and sideroblastic anemia. Muscle biopsy demonstrated low activity of complexes 1 and 4 of the respiratory chain. Electron microscopy revealed paracrystalline inclusions in most mitochondria. Southern blot of the mitochondrial DNA did not show any large-scale rearrangements. The patient was found to be homozygous for the 656C-->T mutation in the pseudouridine synthase 1 gene (PUS1). Mitochondrial myopathy, lactic acidosis, and sideroblastic anemia is an oxidative phosphorylation disorder causing sideroblastic anemia, myopathy, and, in some cases, mental retardation that is due to mutations in the nuclear-encoded PUS1 gene. This finding provides additional evidence that mitochondrial ribonucleic acid modification impacts the phenotypic expression of oxidative phosphorylation disorders.


Asunto(s)
Acidosis Láctica/genética , Anemia Sideroblástica/genética , Hidroliasas/genética , Judíos/genética , Miopatías Mitocondriales/genética , Mutación/genética , Acidosis Láctica/metabolismo , Acidosis Láctica/patología , Adulto , Anemia Sideroblástica/metabolismo , Anemia Sideroblástica/patología , Humanos , Masculino , Miopatías Mitocondriales/metabolismo , Miopatías Mitocondriales/patología , Persia/etnología , Síndrome
9.
Mitochondrion ; 4(5-6): 675-94, 2004 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16120424

RESUMEN

Mitochondrial pathology plays an important role in both inherited and acquired hearing loss. Inherited mitochondrial DNA mutations have been implicated in both syndromic and non-syndromic hearing loss, as well as in predisposition to aminoglycoside ototoxicity. Acquired mitochondrial dysfunction in the absence of mitochondrial DNA mutations has also been proposed as playing an important role in noise-induced and toxin-induced hearing loss. Presbycusis, the hearing loss associated with aging, may be caused by mitochondrial dysfunction resulting from the accumulation of acquired mitochondrial DNA mutations and other factors. The pathophysiological mechanisms and clinical implications of these findings are discussed.

10.
Mitochondrion ; 2(6): 415-27, 2003 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-16120337

RESUMEN

This study describes a multiplex real-time polymerase chain reaction (PCR) assay that quantifies total mitochondrial DNA (mtDNA(total)) and mtDNA bearing the 4977-base pair 'common deletion' (deltamtDNA4977) in lymphoblasts derived from an individual diagnosed with Pearson's syndrome. The method is unique in its use of plasmids as external quantification standards and its use of multiplex conditions. Standards are validated by comparison with purified mtDNA amplification curves and by the fact that curves are largely unaffected by nuclear DNA (nucDNA). Finally, slopes of standard curves and unknowns are shown to be similar to each other and to theoretical predictions. From these data, mtDNA(total) in these cells is calculated to be 3258 (+723/-592) copies per cell while deltamtDNA4977 averages 232 (+136/-86) copies per cell or 7% (+4.65/-2.81).

11.
Hear Res ; 188(1-2): 21-8, 2004 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-14759567

RESUMEN

C57BL/6 (B6) mice experience hearing loss and cochlear degeneration beginning about mid-life, whereas CAST/Ei (CAST) mice retain normal hearing until old age. A locus contributing to the hearing loss of B6 mice, named age-related hearing loss (ahl), was mapped to Chromosome 10. A homozygous, congenic strain of mice (B6.CAST-+ahl ), generated by crossing B6 (ahl/ahl) and CAST (+ahl/+ahl) mice has the same genomic material as the B6 mice except in the region of the ahl locus, which is derived from CAST. In this study, we have determined the extent of the CAST-derived region of Chromosome 10 in the congenic strain and have examined mice of all three strains for hearing loss and cochlear morphology between 9 and 25 months of age. Results for B6 mice were similar to those described previously. CAST mice showed no detectable hearing loss even at 24 months of age; however, they had a small amount of ganglion cell degeneration. B6.CAST-+ahl mice were protected from early onset hearing loss and basal turn degeneration, but older animals did show some hearing loss and ganglion cell degeneration. We conclude that loci in addition to ahl contribute to the differences in hearing loss between B6 and CAST mice. These results illustrate the complex inheritance of age-related hearing loss in mice and may have implications for the study of human presbycusis.


Asunto(s)
Envejecimiento/genética , Envejecimiento/fisiología , Cóclea/patología , Presbiacusia/genética , Presbiacusia/fisiopatología , Envejecimiento/patología , Análisis de Varianza , Animales , Umbral Auditivo/fisiología , Potenciales Evocados Auditivos del Tronco Encefálico , Genotipo , Heterocigoto , Homocigoto , Humanos , Inmunohistoquímica , Ratones , Ratones Endogámicos C57BL , Órgano Espiral/patología , Presbiacusia/patología , Ganglio Espiral de la Cóclea/patología
12.
Ethn Dis ; 14(1): 57-63, 2004.
Artículo en Inglés | MEDLINE | ID: mdl-15002924

RESUMEN

The authors tested the single and combined effects of nuclear and mitochondrial DNA genotypes on the phenotypes of systolic blood pressure (SBP) and weight, and their changes over 5 years in normotensive subjects living in Barbados. The nuclear genotypes were gender (Y chromosome), haptoglobin (HP), and group specific component (Gc). A mitochondrial genotype was chosen as a marker for maternal lineage. Baseline clinic SBP and weight (N=78), 24-hour SBP (N=28) were measured. Five years later, clinic SBP and weight were measured again in 28 participants. Male participants generally had higher pressures than female participants. The HP genotype was associated with 5 of the 8 SBP phenotypes. The haptoglobin-1 (HP1) allele was associated with higher clinic (P=.024) and evening SBP at baseline (P=.020). The effect of HP1 appears to be dominant. Haptoglobin-2 (HP2) was associated with the increase in weight over 5 years (P=.002). Group specific component (Gc) genotype was associated with 6 of the 8 SBP phenotypes. The Gc polymorphism 2 was associated with higher 24-hour SBP, sleep SBP (midnight-6 AM), afternoon SBP (noon-6 PM) and evening SBP (6 PM to midnight). Furthermore, we found a significant association between the haptoglobin/mt-DNA and Gc/mt-DNA polymorphisms with SBP between 6 PM and midnight (P=.009 and P=.011, respectively). The 5-year changes in SBP were significantly associated with the haptoglobin/mt-DNA and Gc/mt-DNA polymorphisms (P=.005 and P=.011, respectively). Multivariate analysis for genetic effects on change in weight and change in BP suggested the rise in BP, but was not suggestive of change in weight. Furthermore, multivariate analysis was associated with Gc, but not Haptoglobin genotype. In normotensive subjects of African descent living in Barbados, the increase in blood pressure with age is significantly influenced by both nuclear and mitochondrial genotypes that are more common in African derived populations.


Asunto(s)
Población Negra/genética , Presión Sanguínea/genética , Haptoglobinas/efectos adversos , Haptoglobinas/genética , Hipertensión/genética , Adulto , Factores de Edad , Análisis de Varianza , Barbados/epidemiología , Peso Corporal/genética , ADN Mitocondrial/genética , Femenino , Marcadores Genéticos , Humanos , Hipertensión/etnología , Masculino , Persona de Mediana Edad , Polimorfismo Genético/genética , Factores Sexuales , Aumento de Peso/genética
13.
N Engl J Med ; 349(13): 1293-4; author reply 1293-4, 2003 Sep 25.
Artículo en Inglés | MEDLINE | ID: mdl-14507958
14.
Mol Genet Metab ; 91(2): 148-56, 2007 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-17374500

RESUMEN

The tissue specificity of mitochondrial diseases is poorly understood. Recently, tissue-specific quantitative differences of the components of the mitochondrial translation system have been found to correlate with disease presentation in fatal hepatopathy caused by mutations in mitochondrial translation factor EFG1. MLASA is an autosomal recessive inherited progressive oxidative phosphorylation disorder that affects muscle and erythroid cells. The disease is caused by the homozygous point mutation C656T (R116W) in the catalytic domain of the pseudouridylate synthase 1 (PUS1) gene, which leads to a complete lack of pseudouridylation at the expected sites in mitochondrial and cytoplasmic tRNAs. Despite the presence of these altered tRNAs, most tissues are unaffected, and even in muscle and erythroid cells the disease phenotype only slowly emerges over the course of years. In order to elucidate intracellular pathways through which the homozygous mutation leads to tissue-restricted phenotype, we performed microarray expression analysis of EBV-transformed lymphoblasts from MLASA patients, heterozygous parents, and controls using human Beadchip microarray with 47,296 transcripts. Genes coding for proteins involved in DNA transcription and its regulation, and metal binding proteins, demonstrated major differences in expression between patients and all other individuals with normal phenotype. Genes coding for ribosomal proteins differed significantly between individual with at least one copy of the mutated PUS1 gene and controls. These findings indicate that the lack of tRNA pseudouridylation can be overcome by compensatory changes in levels of ribosomal proteins, and that the disease phenotype in affected tissues is likely due to pleiotropic effects of PUS1p on non-tRNA molecules involved in DNA transcription and iron metabolism. Similar combinations of mechanisms may play a role in the tissue specificity of other mitochondrial disorders.


Asunto(s)
Anemia Sideroblástica/metabolismo , Hidroliasas/genética , Miopatías Mitocondriales/metabolismo , Anemia Sideroblástica/complicaciones , Anemia Sideroblástica/genética , Animales , Línea Celular , Análisis por Conglomerados , Perfilación de la Expresión Génica , Humanos , Hidroliasas/metabolismo , Hierro/metabolismo , Linfocitos/metabolismo , Ratones , Ratones Noqueados , Miopatías Mitocondriales/complicaciones , Miopatías Mitocondriales/genética , Proteínas Mitocondriales/biosíntesis , Proteínas Mitocondriales/genética , Análisis de Secuencia por Matrices de Oligonucleótidos , Especificidad de Órganos , Linaje , Análisis de Componente Principal , Seudouridina/metabolismo , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Proteínas Ribosómicas/biosíntesis , Proteínas Ribosómicas/genética
15.
Biochem Biophys Res Commun ; 342(4): 1130-6, 2006 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-16513084

RESUMEN

Nuclear modifier genes have been proposed to modulate the phenotypic manifestation of human mitochondrial 12S rRNA A1491G mutation associated with deafness in many families world-wide. Here we identified and characterized the putative nuclear modifier gene TRMU encoding a highly conserved mitochondrial protein related to tRNA modification. A 1937bp TRMU cDNA has been isolated and the genomic organization of TRMU has been elucidated. The human TRMU gene containing 11 exons encodes a 421 residue protein with a strong homology to the TRMU-like proteins of bacteria and other homologs. TRMU is ubiquitously expressed in various tissues, but abundantly in tissues with high metabolic rates including heart, liver, kidney, and brain. Immunofluorescence analysis of human 143B cells expressing TRMU-GFP fusion protein demonstrated that the human Trmu localizes and functions in mitochondrion. Furthermore, we show that in families with the deafness-associated 12S rRNA A1491G mutation there is highly suggestive linkage and linkage disequilibrium between microsatellite markers adjacent to TRMU and the presence of deafness. These observations suggest that human TRMU may modulate the phenotypic manifestation of the deafness-associated mitochondrial 12S rRNA mutations.


Asunto(s)
Encéfalo/enzimología , Sordera/enzimología , Sordera/genética , Mitocondrias/genética , Proteínas Mitocondriales/genética , ARN Ribosómico/genética , ARNt Metiltransferasas/genética , Secuencia de Bases , Mapeo Cromosómico , Predisposición Genética a la Enfermedad/genética , Humanos , Desequilibrio de Ligamiento , Datos de Secuencia Molecular , Mutación , Fenotipo
16.
Am J Hum Genet ; 79(2): 291-302, 2006 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-16826519

RESUMEN

The human mitochondrial 12S ribosomal RNA (rRNA) A1555G mutation has been associated with aminoglycoside-induced and nonsyndromic deafness in many families worldwide. Our previous investigation revealed that the A1555G mutation is a primary factor underlying the development of deafness but is not sufficient to produce a deafness phenotype. However, it has been proposed that nuclear-modifier genes modulate the phenotypic manifestation of the A1555G mutation. Here, we identified the nuclear-modifier gene TRMU, which encodes a highly conserved mitochondrial protein related to transfer RNA (tRNA) modification. Genotyping analysis of TRMU in 613 subjects from 1 Arab-Israeli kindred, 210 European (Italian pedigrees and Spanish pedigrees) families, and 31 Chinese pedigrees carrying the A1555G or the C1494T mutation revealed a missense mutation (G28T) altering an invariant amino acid residue (A10S) in the evolutionarily conserved N-terminal region of the TRMU protein. Interestingly, all 18 Arab-Israeli/Italian-Spanish matrilineal relatives carrying both the TRMU A10S and 12S rRNA A1555G mutations exhibited prelingual profound deafness. Functional analysis showed that this mutation did not affect importation of TRMU precursors into mitochondria. However, the homozygous A10S mutation leads to a marked failure in mitochondrial tRNA metabolisms, specifically reducing the steady-state levels of mitochondrial tRNA. As a consequence, these defects contribute to the impairment of mitochondrial-protein synthesis. Resultant biochemical defects aggravate the mitochondrial dysfunction associated with the A1555G mutation, exceeding the threshold for expressing the deafness phenotype. These findings indicate that the mutated TRMU, acting as a modifier factor, modulates the phenotypic manifestation of the deafness-associated 12S rRNA mutations.


Asunto(s)
Sordera/genética , Mitocondrias/genética , Proteínas Mitocondriales/genética , Mutación , Fenotipo , ARN Ribosómico/genética , ARN de Transferencia/metabolismo , ARN/genética , ARNt Metiltransferasas/genética , Secuencia de Aminoácidos , Femenino , Células HeLa , Humanos , Masculino , Proteínas Mitocondriales/fisiología , Datos de Secuencia Molecular , Linaje , Procesamiento Postranscripcional del ARN/genética , ARN Mitocondrial , ARNt Metiltransferasas/fisiología
17.
Pharmacogenomics ; 6(1): 27-36, 2005 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-15723603

RESUMEN

Ototoxicity is the major irreversible toxicity of aminoglycosides, and it occurs both in a dose-dependent and idiosyncratic fashion. The idiosyncratic pathway is presumably due to genetic predispositions, and an inherited mutation in the mitochondrial 12S ribosomal RNA gene that predisposes carriers to aminoglycoside ototoxicity was identified in 1993. Up to a third of patients with aminoglycoside ototoxicity carry this mutation. Two other mutations in the same mitochondrial gene affect a small minority of additional patients. Thus, the prevention of aminoglycoside-induced ototoxicity through family history and molecular diagnosis is possible in many cases. It is the challenge of genomic medicine to translate this more than a decade-old knowledge into clinical practice.


Asunto(s)
Aminoglicósidos/toxicidad , Pérdida Auditiva/genética , Enfermedades del Oído/inducido químicamente , Enfermedades del Oído/genética , Pérdida Auditiva/inducido químicamente , Humanos , Mutación/efectos de los fármacos , Mutación/genética
18.
J Biol Chem ; 280(20): 19823-8, 2005 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-15772074

RESUMEN

A missense mutation in the PUS1 gene affecting a highly conserved amino acid has been associated with mitochondrial myopathy and sideroblastic anemia (MLASA), a rare autosomal recessive oxidative phosphorylation disorder. The PUS1 gene encodes the enzyme pseudouridine synthase 1 (Pus1p) that is known to pseudouridylate tRNAs in other species. Total RNA was isolated from lymphoblastoid cell lines established from patients, parents, unaffected siblings, and unrelated controls, and the tRNAs were assayed for the presence of pseudouridine (Psi) at the expected positions. Mitochondrial and cytoplasmic tRNAs from MLASA patients are lacking modification at sites normally modified by Pus1p, whereas tRNAs from controls, unaffected siblings, or parents all have Psi at these positions. In addition, there was no Pus1p activity in an extract made from a cell line derived from a patient with MLASA. Immunohistochemical staining of Pus1p in cell lines showed nuclear, cytoplasmic, and mitochondrial distribution of the protein, and there is no difference in staining between patients and unaffected family members. MLASA is thus associated with absent or greatly reduced tRNA pseudouridylation at specific sites, implicating this pathway in its molecular pathogenesis.


Asunto(s)
Anemia Sideroblástica/enzimología , Anemia Sideroblástica/genética , Hidroliasas/genética , Miopatías Mitocondriales/enzimología , Miopatías Mitocondriales/genética , Anemia Sideroblástica/complicaciones , Secuencia de Bases , Línea Celular , Genes Recesivos , Humanos , Miopatías Mitocondriales/complicaciones , Datos de Secuencia Molecular , Mutación Missense , Conformación de Ácido Nucleico , Seudouridina/química , ARN de Transferencia/química , ARN de Transferencia/genética , ARN de Transferencia de Lisina/química , ARN de Transferencia de Lisina/genética , ARN de Transferencia de Serina/química , ARN de Transferencia de Serina/genética
19.
Biochem Biophys Res Commun ; 328(2): 491-8, 2005 Mar 11.
Artículo en Inglés | MEDLINE | ID: mdl-15694374

RESUMEN

The deafness-associated A7445G mutation in the precursor of mitochondrial tRNA(Ser(UCN)) has been identified in several pedigrees from different ethnic backgrounds. To determine the role of nuclear background in the biochemical manifestation associated with the A7445G mutation, we performed a biochemical characterization of this mutation using cybrids constructed by transferring mitochondria from lymphoblastoid cell lines derived from a New Zealand family into human osteosarcoma mtDNA-less (rho(0)) cells. Compared with three control cybrids, three cybrids derived from an affected matrilineal relative carrying the homoplasmic A7445G mutation exhibited approximately 38-57% decrease in the steady-state level of tRNA(Ser(UCN)), which is less reduced levels than in lymphoblastoid cells in the previous study. Furthermore, approximately 22% reduction in the level of aminoacylation of tRNA(Ser(UCN)) was observed in the mutant cybrid cells. Interestingly, approximately 60-63% decrease of steady-state level of ND6 gene, which belongs to the same precursor as that of tRNA(Ser(UCN)), in cybrid cell lines carrying the A7445G mutation, is more than that observed in lymphoblastoid cells. These observations strongly point out a mechanistic link between the processing defect of the tRNA(Ser(UCN)) precursor and decreased stability of ND6 mRNA precursor. These results also imply the influence of nuclear background on the biochemical phenotype associated with the A7445G mutation.


Asunto(s)
ADN Mitocondrial/genética , Pérdida Auditiva Sensorineural/genética , Osteosarcoma/genética , Mutación Puntual , ARN de Transferencia de Serina/genética , Línea Celular , Humanos , Linfocitos/fisiología
20.
Ear Hear ; 24(4): 303-13, 2003 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-12923421

RESUMEN

The last decade has led to the identification of several mitochondrial DNA mutations associated with hearing loss. Since the only known function of the human mitochondrial chromosome is to participate in the production of chemical energy through oxidative phosphorylation, it was not unexpected that mitochondrial mutations interfering with energy production could cause systemic neuromuscular disorders, which have as one of their features hearing impairment. Surprisingly, however, inherited mitochondrial mutations also have been found to be a cause of non-syndromic hearing loss, and predispose to aminoglycoside induced hearing loss, while acquired mitochondrial mutations have been proposed as one of the causes of presbycusis. After a brief review of mitochondrial genetics, we will outline the different mitochondrial mutations associated with hearing loss, describe the audiological features, and discuss the clinical relevance of diagnosing these mutations. Clinical expression of these mitochondrial mutations is dependent on environmental exposures and nuclear-encoded modifier genes. Preventive and therapeutic strategies will depend on identification and avoidance of the environmental exposures, and the identification of the nuclear-encoded modifier genes. Experimental approaches to identify these modifier genes will be presented.


Asunto(s)
Sordera/genética , Mitocondrias/genética , Enfermedades Mitocondriales/genética , Sordera/fisiopatología , Humanos , Enfermedades Mitocondriales/fisiopatología , Mutación , Presbiacusia/genética , Síndrome
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