Electrospray Mass Spectrometry to Study Combinatorial iClick Reactions and Multiplexed Kinetics of [Ru(N3)(N∧N)(terpy)]PF6 with Alkynes of Different Steric and Electronic Demand.

In a combinatorial approach, a family of ruthenium(II) azido complexes [Ru(N3)(N∧N)(terpy)]PF6 with terpy = 2,2':6',2″-terpyridine and N∧N as a bidentate chelator derived from 2,2'-biypridine and its 4,4'-disubstituted derivatives, 2,2'-bipyrimidine, and 1,10-phenanthroline were reacted with different internal and terminal alkynes to give access to a total of 7 × 7 = 49 triazolato complexes in a room-temperature catalyst-free iClick reaction. The reactants were mixed in a repurposed high-performance liquid chromatography (HPLC) autosampler, and the reaction progress was monitored by direct injection into an electrospray mass spectrometer. The ratio of the peak intensities of [Ru(N3)(N∧N)(terpy)]+ and [Ru(triazolato)(N∧N)(terpy)]+ was converted to a colored heat map for facile visual inspection of the conversion ratio. By automated multiple injections of the reaction mixture in fixed time intervals and plotting peak intensities over reaction time, pseudo-first-order rate constants were easily determined. Finally, nonoverlapping isotope patterns of the azido starting materials and triazolato products enabled multiplexed parallel determination of rate constants for four different ruthenium(II) azido complexes from a single sample vial, thereby reducing experiment time by 75%.

Neomorphic DNA-binding enables tumor-specific therapeutic gene expression in fusion-addicted childhood sarcoma.

Chimeric fusion transcription factors are oncogenic hallmarks of several devastating cancer entities including pediatric sarcomas, such as Ewing sarcoma (EwS) and alveolar rhabdomyosarcoma (ARMS). Despite their exquisite specificity, these driver oncogenes have been considered largely undruggable due to their lack of enzymatic activity.Here, we show in the EwS model that - capitalizing on neomorphic DNA-binding preferences - the addiction to the respective fusion transcription factor EWSR1-FLI1 can be leveraged to express therapeutic genes.We genetically engineered a de novo enhancer-based, synthetic and highly potent expression cassette that can elicit EWSR1-FLI1-dependent expression of a therapeutic payload as evidenced by episomal and CRISPR-edited genomic reporter assays. Combining in silico screens and immunohistochemistry, we identified GPR64 as a highly specific cell surface antigen for targeted transduction strategies in EwS. Functional experiments demonstrated that anti-GPR64-pseudotyped lentivirus harboring our expression cassette can specifically transduce EwS cells to promote the expression of viral thymidine kinase sensitizing EwS for treatment to otherwise relatively non-toxic (Val)ganciclovir and leading to strong anti-tumorigenic, but no adverse effects in vivo. Further, we prove that similar vector designs can be applied in PAX3-FOXO1-driven ARMS, and to express immunomodulatory cytokines, such as IL-15 and XCL1, in tumor entities typically considered to be immunologically 'cold'.Collectively, these results generated in pediatric sarcomas indicate that exploiting, rather than suppressing, the neomorphic functions of chimeric transcription factors may open inroads to innovative and personalized therapies, and that our highly versatile approach may be translatable to other cancers addicted to oncogenic transcription factors with unique DNA-binding properties.

Triplet Pair States in Singlet Fission.

This account aims at providing an understanding of singlet fission, i.e., the photophysical process of a singlet state ( S1) splitting into two triplet states (2 × T1) in molecular chromophores. Since its discovery 50 years ago, the field of singlet fission has enjoyed rapid expansion in the past 8 years. However, there have been lingering confusion and debates on the nature of the all-important triplet pair intermediate states and the definition of singlet fission rates. Here we clarify the confusion from both theoretical and experimental perspectives. We distinguish the triplet pair state that maintains electronic coherence between the two constituent triplets, 1(TT), from one which does not, 1(T···T). Only the rate of formation of 1(T···T) is defined as that of singlet fission. We present distinct experimental evidence for 1(TT), whose formation may occur via incoherent and/or vibronic coherent mechanisms. We discuss the challenges in treating singlet fission beyond the dimer approximation, in understanding the often neglected roles of delocalization on singlet fission rates, and in realizing the much lauded goal of increasing solar energy conversion efficiencies with singlet fission chromophores.

A backward encoding approach to recover subcortical auditory activity.

Several subcortical nuclei along the auditory pathway are involved in the processing of sounds. One of the most commonly used methods of measuring the activity of these nuclei is the auditory brainstem response (ABR). Due to its low signal-to-noise ratio, ABR's have to be derived by averaging over activity generated by thousands of artificial sounds such as clicks or tone bursts. This approach cannot be easily applied to natural listening situations (e.g. speech, music), which limits auditory cognitive neuroscientific studies to investigate mostly cortical processes. We propose that by individually training backward encoding models to reconstruct evoked ABRs from high-density electrophysiological data, spatial filters can be tuned to auditory brainstem activity. Since these individualized filters can be applied (i.e. generalized) to any other data set using the same spatial coverage, this could allow for the estimation of auditory brainstem activity from any continuous sensor level data. In this study, we established a proof-of-concept by using backward encoding models generated using a click stimulation rate of 30 â€‹Hz to predict ABR activity recorded using EEG from an independent measurement using a stimulation rate of 9 â€‹Hz. We show that individually predicted and measured ABR's are highly correlated (r â€‹~ â€‹0.7). Importantly these predictions are stable even when applying the trained backward encoding model to a low number of trials, mimicking a situation with an unfavorable signal-to-noise ratio. Overall, this work lays the necessary foundation to use this approach in more interesting listening situations.

Using a regional ocean model to understand the structure and variability of acoustic arrivals in Fram Strait.

A regional ocean model for Fram Strait provides a framework for interpretation of the variability and structure of acoustic tomography arrivals. The eddy-permitting model (52 vertical levels and 4.5 km horizontal resolution) was evaluated using long-term moored hydrography data and time series of depth-range averaged temperature obtained from the inversion of acoustic tomography measurements. Geometric ray modeling using the ocean model fields reproduces the measured arrival structure of the acoustic tomography experiment. The combination of ocean and acoustic models gives insights into acoustic propagation during winter and spring. Moreover, overlapping arrivals coming from different vertical angles can be resolved and explained. The overlapping arrival of purely refracted rays and surface-reflected/bottom-reflected (SRBR) rays has implications for the inversion of tomography data in Fram Strait. The increased knowledge about the ray-length variations of SRBR rays is valuable for choosing appropriate observation kernels for the data assimilation of acoustic tomography data in Fram Strait.

Stringing the Perylene Diimide Bow.

This study explores a new mode of contortion in perylene diimides where the molecule is bent, like a bow, along its long axis. These bowed PDIs were synthesized through a facile fourfold Suzuki macrocyclization with aromatic linkers and a tetraborylated perylene diimide that introduces strain and results in a bowed structure. By altering the strings of the bow, the degree of bending can be controlled from flat to highly bent. Through spectroscopy and quantum chemical calculations, it is demonstrated that the energy of the lowest unoccupied orbital can be controlled by the degree of bending in the structures and that the energy of the highest occupied orbital can be controlled to a large extent by the constitution of the aromatic linkers. The important finding is that the bowing results not only in red-shifted absorptions but also more facile reductions.

Controlling Singlet Fission by Molecular Contortion.

Singlet fission, the generation of two triplet excited states from the absorption of a single photon, may potentially increase solar energy conversion efficiency. A major roadblock in realizing this potential is the limited number of molecules available with high singlet fission yields and sufficient chemical stability. Here, we demonstrate a strategy for developing singlet fission materials in which we start with a stable molecular platform and use strain to tune the singlet and triplet energies. Using perylene diimide as a model system, we tune the singlet fission energetics from endoergic to exoergic or iso-energetic by straining the molecular backbone. The result is an increase in the singlet fission rate by 2 orders of magnitude. This demonstration opens a door to greatly expanding the molecular toolbox for singlet fission.

Preparation, Properties, and Structures of the Radical Anions and Dianions of Azapentacenes.

A series of diazapentacenes (5,14-diethynyldibenzo[b,i]phenazine, 6,13-diethynylnaphtho[2,3-b]phenazine) and tetraazapentacenes (7,12-diethynylbenzo[g]quinoxalino[2,3-b]quinoxaline, 6,13-diethynylquinoxalino[2,3-b]phenazine) were reduced to their radical anions and dianions, employing either potassium anthracenide or lithium naphthalenide in THF. The anionic species formed were investigated by UV-vis-NIR, fluorescence and EPR spectroscopy, spectroelectrochemistry, and quantum chemical calculations. Single crystal X-ray structures of three of their radical anions and of three of their dianions were obtained. In contrast to the acenes, the anions of the azapentacenes are persistent and, in some cases, even moderately stable toward air, and were characterized.

Resolution, identification, and stability of broadband acoustic arrivals in Fram Strait.

An ocean acoustic tomography system consisting of three moorings with low frequency, broadband transceivers and a moored receiver located approximately in the center of the triangle formed by the transceivers was installed in the central, deep-water part of Fram Strait during 2010-2012. Comparisons of the acoustic receptions with predictions based on hydrographic sections show that the oceanographic conditions in Fram Strait result in complex arrival patterns in which it is difficult to resolve and identify individual arrivals. In addition, the early arrivals are unstable, with the arrival structures changing significantly over time. The stability parameter α suggests that the instability is likely not due to small-scale variability, but rather points toward strong mesoscale variability in the presence of a relatively weak sound channel as being largely responsible. The estimator-correlator [Dzieciuch, J. Acoust. Soc. Am. 136, 2512-2522 (2014)] is shown to provide an objective formalism for generating travel-time series given the complex propagation conditions. Because travel times obtained from the estimator-correlator are not associated with resolved, identified ray arrivals, inverse methods are needed that do not use sampling kernels constructed from geometric ray paths. One possible approach would be to use travel-time sensitivity kernels constructed for the estimator-correlator outputs.

Bent N-Heteroarenes.

The syntheses and optical, electronic, and structural properties of a series of bent N-heteroarenes are described. The targets were obtained by condensation reactions of substituted aromatic o-diamines with 1,2-naphthoquinone and 1,2-anthraquinone in yields between 34 and 94%; naphthoquione-based products are generally formed in higher yields.

Identification and quantification of soundscape components in the Marginal Ice Zone.

Acoustic experiments using an integrated ice station were carried out during August 2012 and September 2013 in the Marginal Ice Zone (MIZ) of Fram Strait. The two experiments lasted four days each and collected under-ice acoustic recordings together with wave-in-ice and meteorological data. Synthetic aperture radar satellite data provided information on regional ice conditions. Four major components of the under-ice soundscape were identified: ship cavitation noise, seismic airgun noise, marine mammal vocalizations, and natural background noise. Ship cavitation noise was connected to heavy icebreaking. It dominated the soundscape at times, with noise levels (NLs) 100 km from the icebreaker increased by 10-28 dB. Seismic airgun noise that originated from seismic surveys more than 800 km away was present during 117 out of 188 observation hours. It increased NLs at 20-120 Hz by 2-6 dB. Marine mammal vocalizations were a minor influence on measured NLs, but their prevalence shows the biological importance of the MIZ. The 10th percentile of the noise distributions was used to identify the ambient background noise. Background NLs above 100 Hz differed by 12 dB between the two experiments, presumably due to variations in natural noise sources.

The Radical Anion and Dianion of Tetraazapentacene.

The mono- and bis-reduction of 6,13-bis((triisopropylsilyl)ethynyl)quinoxalino[2,3-b]phenazine (1) with potassium anthracenide in THF is reported. Both the radical anion 1(.-) and the dianion 1(2-) were isolated and characterized by optical and structural (single-crystal X-ray diffraction) methods. Solutions of the radical anion 1(.-) were stable in air for several hours and characterized by EPR spectroscopy. Dianion 1(2-) is highly fluorescent and photostable.

Interaction between Air Bubbles and Superhydrophobic Surfaces in Aqueous Solutions.

Superhydrophobic surfaces are usually characterized by a high apparent contact angle of water drops in air. Here we analyze the inverse situation: Rather than focusing on water repellency in air, we measure the attractive interaction of air bubbles and superhydrophobic surfaces in water. Forces were measured between microbubbles with radii R of 40-90 µm attached to an atomic force microscope cantilever and submerged superhydrophobic surfaces. In addition, forces between macroscopic bubbles (R = 1.2 mm) at the end of capillaries and superhydrophobic surfaces were measured. As superhydrophobic surfaces we applied soot-templated surfaces, nanofilament surfaces, micropillar arrays with flat top faces, and decorated micropillars. Depending on the specific structure of the superhydrophobic surfaces and the presence and amount of entrapped air, different interactions were observed. Soot-templated surfaces in the Cassie state showed superaerophilic behavior: Once the electrostatic double-layer force and a hydrodynamic repulsion were overcome, bubbles jumped onto the surface and fully merged with the entrapped air. On nanofilaments and micropillar arrays we observed in addition the formation of sessile bubbles with finite contact angles below 90° or the attachment of bubbles, which retained their spherical shape.

2-Bromotetraazapentacene and Its Functionalization by Pd(0)-Chemistry.

We have synthesized a brominated N,N'-dihydrotetraazapentacene using a condensation route. Sonogashira reactions replace the Br-substituent by an alkynyl group, placed on the azaacene core. Sonogashira coupling of brominated dihydro tetraazapentacene 1H2 with alkynes and subsequent oxidation afford several functionalized TIPS-tetraazapentacene derivatives with energetically stabilized FMOs. These TIPS-TAPs are either crystalline or amorphous, depending upon their substitution pattern.

Synthesis and structure of tetraethynylsilane and its silylated derivatives.

The known tetrakis((trimethylsilyl)ethynyl)silane was prepared and deprotected. By using trifluoromethanesulfonic acid, the smooth stepwise desilylation of the starting material was achieved, and all of the partially protected and the fully deprotected species were isolated by sublimation. Crystal structures of all of the partially and the fully deprotected species were obtained. None of the compounds is thermally sensitive. Attempts to explosively decompose these species upon heating failed.

Fourfold Diels-Alder reaction of tetraethynylsilane.

A series of ethynylated silanes, including tetraethynylsilane, was treated with tetraphenylcyclopentadienone at 300 °C under microwave irradiation to give the aromatized Diels-Alder adducts as sterically encumbered mini-dendrimers with up to 20 benzene rings. The sterically most congested adducts display red-shifted emission through intramolecular π-π interactions in the excited state.

Porous polymers based on aryleneethynylene building blocks.

Porous conjugated polymers are synthesized by metal-catalyzed coupling reactions. The progress for porous polymers when planar or tetrahedral building blocks are connected by alkyne units into novel materials is highlighted. The most prominent reaction for the buildup of the microporous alkyne-bridged polymers is the Sonogashira reaction, connecting alkynes to aromatic iodides or bromides. The availability of the building blocks and the potency of the Sonogashira reaction allow preparing a large variety of intrinsically porous polymeric materials, in which rigid struts connect multipronged centers. The microporous polymers are used as catalysts and as storage materials for gases and sensors. Postfunctionalization schemes, understanding of structure-property relationships, and the quest for high porosity are pertinent.

Polymer-Conjugated Carbon Nanotubes for Biomolecule Loading.

Nanomaterials have emerged as an invaluable tool for the delivery of biomolecules such as DNA and RNA, with various applications in genetic engineering and post-transcriptional genetic manipulation. Alongside this development, there has been an increasing use of polymer-based techniques, such as polyethylenimine (PEI), to electrostatically load polynucleotide cargoes onto nanomaterial carriers. However, there remains a need to assess nanomaterial properties, conjugation conditions, and biocompatibility of these nanomaterial-polymer constructs, particularly for use in plant systems. In this work, we develop mechanisms to optimize DNA loading on single-walled carbon nanotubes (SWNTs) with a library of polymer-SWNT constructs and assess DNA loading ability, polydispersity, and both chemical and colloidal stability. Counterintuitively, we demonstrate that polymer hydrolysis from nanomaterial surfaces can occur depending on polymer properties and attachment chemistries, and we describe mitigation strategies against construct degradation. Given the growing interest in delivery applications in plant systems, we also assess the stress response of plants to polymer-based nanomaterials and provide recommendations for future design of nanomaterial-based polynucleotide delivery strategies.

Submicrometer-Sized Roughness Suppresses Bacteria Adhesion.

Biofilm formation is most commonly combatted with antibiotics or biocides. However, proven toxicity and increasing resistance of bacteria increase the need for alternative strategies to prevent adhesion of bacteria to surfaces. Chemical modification of the surfaces by tethering of functional polymer brushes or films provides a route toward antifouling coatings. Furthermore, nanorough or superhydrophobic surfaces can delay biofilm formation. Here we show that submicrometer-sized roughness can outweigh surface chemistry by testing the adhesion of E. coli to surfaces of different topography and wettability over long exposure times (>7 days). Gram-negative and positive bacterial strains are tested for comparison. We show that an irregular three-dimensional layer of silicone nanofilaments suppresses bacterial adhesion, both in the presence and absence of an air cushion. We hypothesize that a 3D topography can delay biofilm formation (i) if bacteria do not fit into the pores of the coating or (ii) if bending of the bacteria is required to adhere. Thus, such a 3D topography offers an underestimated possibility to design antibacterial surfaces that do not require biocides or antibiotics.

When and how self-cleaning of superhydrophobic surfaces works.

Despite the enormous interest in superhydrophobicity for self-cleaning, a clear picture of contaminant removal is missing, in particular, on a single-particle level. Here, we monitor the removal of individual contaminant particles on the micrometer scale by confocal microscopy. We correlate this space- and time-resolved information with measurements of the friction force. The balance of capillary and adhesion force between the drop and the contamination on the substrate determines the friction force of drops during self-cleaning. These friction forces are in the range of micro-Newtons. We show that hydrophilic and hydrophobic particles hardly influence superhydrophobicity provided that the particle size exceeds the pore size or the thickness of the contamination falls below the height of the protrusions. These detailed insights into self-cleaning allow the rational design of superhydrophobic surfaces that resist contamination as demonstrated by outdoor environmental (>200 days) and industrial standardized contamination experiments.