How land-use intensity affects sexual and parthenogenetic oribatid mites in temperate forests and grasslands in Germany.

Intensive land use has been shown to alter the composition and functioning of soil communities. Due to their low dispersal ability, oribatid mites are particularly vulnerable to land-use intensification and species which are not adjusted to management-related disturbances become less abundant. We investigated how different land-use parameters in forests and grasslands affect oribatid mite diversity and abundance, with a focus on: (1) species-level impacts, by classifying species as increasing ('winners') or decreasing ('losers') in abundance with higher land-use intensity, and (2) reproductive impact, by investigating whether sexual and parthenogenetic species react differently. We collected 32,542 adult oribatid mites in 60 forests and grasslands of known land-use intensity in two regions of Germany. Diversity and total abundance as well as the proportion of sexual species were higher in forests than in grasslands. Diversity declined with higher land-use intensity in forests, but increased with higher mowing and fertilization in grasslands. Depending on land-use parameter and region, abundance either declined or remained unaffected by increasing intensity. Gravidity was higher in sexual than in parthenogenetic species and sexuals had 1.6× more eggs per gravid female. Proportions of sexual species and gravid females decreased with land-use intensity in forests, but increased with mowing in grasslands. At the species level, 75% of sexuals and 87.5% of parthenogens were 'losers' of higher percentages of dead wood originating from management-related disturbances. Across land-use parameters and habitats, a similar proportion of sexual and parthenogenetic oribatid mite species were 'losers' of high land-use intensity. However, 'winner' species were more common among sexuals.

De novo biosynthesis of simple aromatic compounds by an arthropod (Archegozetes longisetosus).

The ability to synthesize simple aromatic compounds is well known from bacteria, fungi and plants, which all share an exclusive biosynthetic route-the shikimic acid pathway. Some of these organisms further evolved the polyketide pathway to form core benzenoids via a head-to-tail condensation of polyketide precursors. Arthropods supposedly lack the ability to synthesize aromatics and instead rely on aromatic amino acids acquired from food, or from symbiotic microorganisms. The few studies purportedly showing de novo biosynthesis via the polyketide synthase (PKS) pathway failed to exclude endosymbiotic bacteria, so their results are inconclusive. We investigated the biosynthesis of aromatic compounds in defence secretions of the oribatid mite Archegozetes longisetosus. Exposing the mites to a diet containing high concentrations of antibiotics removed potential microbial partners but did not affect the production of defensive benzenoids. To gain insights into benzenoid biosynthesis, we fed mites with stable-isotope labelled precursors and monitored incorporation with mass spectrometry. Glucose, malonic acid and acetate, but not phenylalanine, were incorporated into the benzenoids, further evidencing autogenous biosynthesis. Whole-transcriptome sequencing with hidden Markov model profile search of protein domain families and subsequent phylogenetic analysis revealed a putative PKS domain similar to an actinobacterial PKS, possibly indicating a horizontal gene transfer.

Temperature Affects Chemical Defense in a Mite-Beetle Predator-Prey System.

Temperature influences all biochemical and biophysiological processes within an organism. By extension, it also affects those ecological interactions that are mediated by gland-produced chemical compounds, such as reservoir-based chemical defense. Herein, we investigate how environmental temperature affects the regeneration of defensive secretions and influences the efficacy of chemical defense in a model predator-prey system: the oribatid mite Archegozetes longisetosus and the predaceous rove beetle Stenus juno. Through a combination of chemical analyses, non-linear regression modeling and theoretical simulations we show that the amount of defensive secretion responded to temperature in a unimodal optimum curve: the regeneration rate followed a positive, linear relationship up to 35 °C, but rapidly broke down beyond this temperature ("tipping point" effect). Using functional response simulations, there is an initially positive dampening effect on the predation rate when regeneration is optimal, but at higher temperatures chemical defense does not counteract the previously described effects of elevated predatory pressure. In a larger context, our results demonstrate the need to integrate relevant environmental factors in predator-prey modeling approaches.

Storage and release of hydrogen cyanide in a chelicerate (Oribatula tibialis).

Cyanogenesis denotes a chemical defensive strategy where hydrogen cyanide (HCN, hydrocyanic or prussic acid) is produced, stored, and released toward an attacking enemy. The high toxicity and volatility of HCN requires both chemical stabilization for storage and prevention of accidental self-poisoning. The few known cyanogenic animals are exclusively mandibulate arthropods (certain myriapods and insects) that store HCN as cyanogenic glycosides, lipids, or cyanohydrins. Here, we show that cyanogenesis has also evolved in the speciose Chelicerata. The oribatid mite Oribatula tibialis uses the cyanogenic aromatic ester mandelonitrile hexanoate (MNH) for HCN storage, which degrades via two different pathways, both of which release HCN. MNH is emitted from exocrine opisthonotal oil glands, which are potent organs for chemical defense in most oribatid mites.

Fatty acid metabolism in an oribatid mite: de novo biosynthesis and the effect of starvation.

The fatty acid (FA) composition of lipids in animals is influenced by factors such as species, life stage, availability and type of food, as well as the ability to synthesize certain FAs de novo. We investigated the effect of starvation on the neutral lipid (NLFA) and phospholipid (PLFA) fatty acid patterns of the oribatid mite Archegozetes longisetosus Aoki. Furthermore, we performed stable-isotope labeled precursors feeding experiments under axenic conditions to delineate de novo FA synthesis by profiling 13C and deuterium incorporation via single-ion monitoring. Starvation of mites resulted in a decline in the total amount of NLFAs and significantly changed the fatty acid patterns, indicating that NLFAs were metabolized selectively. Biochemical tracer experiments confirmed that oribatid mites, like other animals, can produce stearic (18:0) and oleic acid (18:1ω9) de novo. Mass spectrometric data also revealed that they appear to synthesize linoleic acid [18:2ω6,9 = (9Z,12Z)-octadeca-9,12-dienoic acid]-an ability restricted only to a few arthropod taxa, including astigmatid mites. The physiological and biosynthesis processes revealed here are crucial to understand the potential biomarker function of fatty acids-especially 18:2ω6,9-in oribatid mites and their applicability in soil animal food web studies.

Nutritional quality modulates trait variability.

BACKGROUND: Trait based functional and community ecology is en vogue. Most studies, however, ignore phenotypical diversity by characterizing entire species considering only trait means rather than their variability. Phenotypical variability may arise from genotypical differences or from ecological factors (e.g., nutritionally imbalanced diet), and these causes can usually not be separated in natural populations. We used a single genotype from a parthenogenetic model system (the oribatid mite Archegozetes longisetosus Aoki) to exclude genotypical differences. We investigated patterns of dietary (10 different food treatments) induced trait variation by measuring the response of nine different traits (relating to life history, morphology or exocrine gland chemistry). RESULTS: Nutritional quality (approximated by carbon-to-nitrogen ratios) influenced all trait means and their variation. Some traits were more prone to variation than others. Furthermore, the "threshold elemental ratio"- rule of element stoichiometry applied to phenotypic trait variation. Imbalanced food (i.e. food not able to fully meet the nutritional demands of an animal) led to lower trait mean values, but also to a higher variation of traits. CONCLUSION: Imbalanced food led not only to lower trait value averages, but also to higher trait variability. There was a negative relationship between both parameters, indicating a direct link of both, average trait levels and trait variation to nutritional quality. Hence, variation of trait means may be a predictor for general food quality, and further indicate trade-offs in specific traits an animal must deal with while feeding on imbalanced diets.

Patterns and dynamics of neutral lipid fatty acids in ants - implications for ecological studies.

BACKGROUND: Trophic interactions are a fundamental aspect of ecosystem functioning, but often difficult to observe directly. Several indirect techniques, such as fatty acid analysis, were developed to assess these interactions. Fatty acid profiles may indicate dietary differences, while individual fatty acids can be used as biomarkers. Ants are among the most important terrestrial animal groups, but little is known about their lipid metabolism, and no study so far used fatty acids to study their trophic ecology. We set up a feeding experiment with high- and low-fat food to elucidate patterns and dynamics of neutral lipid fatty acids (NLFAs) assimilation in ants. We asked whether dietary fatty acids are assimilated through direct trophic transfer, how diet influences NLFA total amounts and patterns over time, and whether these assimilation processes are similar across species and life stages. RESULTS: Ants fed with high-fat food quickly accumulated specific dietary fatty acids (C18:2n6, C18:3n3 and C18:3n6), compared to ants fed with low-fat food. Dietary fat content did not affect total body fat of workers or amounts of fatty acids extensively biosynthesized by animals (C16:0, C18:0, C18:1n9). Larval development had a strong effect on the composition and amounts of C16:0, C18:0 and C18:1n9. NLFA compositions reflected dietary differences, which became more pronounced over time. Assimilation of specific dietary NLFAs was similar regardless of species or life stage, but these factors affected dynamics of other NLFAs, composition and total fat. CONCLUSIONS: We showed that ants accumulated certain dietary fatty acids via direct trophic transfer. Fat content of the diet had no effect on lipids stored by ants, which were able to synthesize high amounts of NLFAs from a sugar-based diet. Nevertheless, dietary NLFAs had a strong effect on metabolic dynamics and profiles. Fatty acids are a useful tool to study trophic biology of ants, and could be applied in an ecological context, although factors that affect NLFA patterns should be taken into account. Further studies should address which NLFAs can be used as biomarkers in natural ant communities, and how factors other than diet affect fatty acid dynamics and composition of species with distinct life histories.

Priorities for research in soil ecology.

The ecological interactions that occur in and with soil are of consequence in many ecosystems on the planet. These interactions provide numerous essential ecosystem services, and the sustainable management of soils has attracted increasing scientific and public attention. Although soil ecology emerged as an independent field of research many decades ago, and we have gained important insights into the functioning of soils, there still are fundamental aspects that need to be better understood to ensure that the ecosystem services that soils provide are not lost and that soils can be used in a sustainable way. In this perspectives paper, we highlight some of the major knowledge gaps that should be prioritized in soil ecological research. These research priorities were compiled based on an online survey of 32 editors of Pedobiologia - Journal of Soil Ecology. These editors work at universities and research centers in Europe, North America, Asia, and Australia.The questions were categorized into four themes: (1) soil biodiversity and biogeography, (2) interactions and the functioning of ecosystems, (3) global change and soil management, and (4) new directions. The respondents identified priorities that may be achievable in the near future, as well as several that are currently achievable but remain open. While some of the identified barriers to progress were technological in nature, many respondents cited a need for substantial leadership and goodwill among members of the soil ecology research community, including the need for multi-institutional partnerships, and had substantial concerns regarding the loss of taxonomic expertise.

Scent of a mite: origin and chemical characterization of the lemon-like flavor of mite-ripened cheeses.

Cheese infested with cheese mites is usually treated as unpalatable. Nevertheless, some traditional cheese manufactories in Germany and France intentionally use mites for fermentation of special varieties (i.e. Milbenkäse and Mimolette). While their production includes different mite species, both are characterized by a "lemon-like" flavor. However, the chemical nature and origin of this flavor-component is unknown. The cheese mites possess a pair of opisthosomal glands producing blends of hydrocarbons, terpenes and aromatics. Here, we describe the chemical profiles of the astigmatid mite species Tyrolichus casei (Milbenkäse) and Acarus siro (Mimolette). Although the chemical profiles differ in several aspects, both mite species produce neral (a volatile flavor component of lemon oil), which was absent from the headspace of both cheeses without mites. We conclude that the lemon-like flavor of mite cheese is not a consequence of fermentation of the cheese itself but a component from secretions of the cheese mites.

Mechanical and elemental characterization of ant mandibles: consequences for bite mechanics.

Mandible morphology has an essential role in biting performance, but the mandible cuticle can have regional differences in its mechanical properties. The effects of such a heterogeneous distribution of cuticle material properties in the mandible responses to biting loading are still poorly explored in chewing insects. Here, we tested the mechanical properties of mandibles of the ant species Formica cunicularia by nanoindentation and investigated the effects of the cuticular variation in Young's modulus (E) under bite loading with finite-element analysis (FEA). The masticatory margin of the mandible, which interacts with the food, was the hardest and stiffest region. To unravel the origins of the mechanical property gradients, we characterized the elemental composition by energy-dispersive X-ray spectroscopy. The masticatory margin possessed high proportions of Cu and Zn. When incorporated into the FEA, variation in E effectively changed mandible stress patterns, leading to a relatively higher concentration of stresses in the stiffer mandibular regions and leaving the softer mandible blade with relatively lower stress. Our results demonstrated the relevance of cuticle E heterogeneity in mandibles under bite loading, suggesting that the accumulation of transition metals such as Cu and Zn has a relevant correlation with the mechanical characteristics in F. cunicularia mandibles.

Transcriptome-informed identification and characterization of Planococcus citri cis- and trans-isoprenyl diphosphate synthase genes.

Insect physiology and reproduction depend on several terpenoid compounds, whose biosynthesis is mainly unknown. One enigmatic group of insect monoterpenoids are mealybug sex pheromones, presumably resulting from the irregular coupling activity of unidentified isoprenyl diphosphate synthases (IDSs). Here, we performed a comprehensive search for IDS coding sequences of the pest mealybug Planococcus citri. We queried the available genomic and newly generated short- and long-read P. citri transcriptomic data and identified 18 putative IDS genes, whose phylogenetic analysis indicates several gene family expansion events. In vitro testing confirmed regular short-chain coupling activity with five gene products. With the candidate with highest IDS activity, we also detected low amounts of irregular coupling products, and determined amino acid residues important for chain-length preference and irregular coupling activity. This work therefore provides an important foundation for deciphering terpenoid biosynthesis in mealybugs, including the sex pheromone biosynthesis in P. citri.

Functional morphology and bite performance of raptorial chelicerae of camel spiders (Solifugae).

Solifugae are an understudied group of relatively large arachnids with well over 1000 species distributed on almost all major continents. These highly active predators utilize their large chelicerae for feeding, defense, burrowing and mating. We investigated the differences in cheliceral morphology and performance of two ecologically divergent species from North Africa; the cursorial Galeodes sp. and the burrowing Rhagodes melanus. Morphological data show differences in aspect ratio between the two species. Bite force measurements show Rhagodes (N=11) to be a much stronger biter than Galeodes (N=8), in terms of both absolute maximum force (Rhagodes 5.63 N, Galeodes 2.12 N) and force relative to cheliceral size. Synchrotron microtomographs of one specimen for each species reveal large differences in physiological cross-sectional area (PCSA) and estimated muscle stress, resulting in a much higher muscle stress in Rhagodes. This species also showed a longer muscle fiber length. Muscle volume and PCSA were found to differ between the two chelicerae in the two scanned specimens. Whereas Rhagodes reflects this morphological asymmetry in having a higher bite force in the right chelicera, Galeodes shows no such bias.

Regeneration of complex oil-gland secretions and its importance for chemical defense in an oribatid mite.

Most oribatid mites possess a pair of opisthonotal exocrine glands that produce mostly complex, species-specific secretions. Such blends may contain more than 10 different compounds, but hardly anything is known about their primary biosynthesis or regeneration. I analyzed recovery of the 6 main components from the 11-compound secretion of the oribatid mite Archegozetes longisetosus Aoki, including the main chemical classes hydrocarbons, aromatics, and terpenes, during a 20-day time course after complete gland depletion. About 10 % of the original total secretion amount was restored after 24 hr, and after 2-6 days, the amount had reached the range of total amount observed in the control group. Most compounds were recovered at similar rates within the first 48 hr. An important exception was pentadecane, which was predominantly produced in the first few hours, suggesting that this compound is the main solvent of the secretion. Although relative amounts of the main compounds differed significantly over time, the complex profile of the whole secretion was stable and not confidently distinguishable among the sampling dates. The general recovery rate was high during the first 48 hr, about 25 times higher than in the remaining 18 days. The biological importance of this high initial investment was supported by predation experiments: the predacious rove beetle Stenus juno was first repelled after 48 hr when at least 25 % of secretions was restored.

Expanding the 'enemy-free space' for oribatid mites: evidence for chemical defense of juvenile Archegozetes longisetosus against the rove beetle Stenus juno.

Adult oribatid mites are thought to live functionally in 'enemy-free space' due to numerous morphological and chemical defensive strategies. Most juvenile oribatid mites, however, lack hardened cuticles and are thus thought to be under stronger predation pressure. On the other hand, the majority of oribatids have exocrine oil glands in all developmental stages, possibly rendering chemical defense the crucial survival strategy in juvenile Oribatida. We manipulated tritonymphs of the model oribatid mite Archegozetes longisetosus to completely discharge their oil glands and offered these chemically disarmed specimens to the polyphagous rove beetle Stenus juno. Disarmed specimens were easily consumed. By contrast, specimens with filled oil glands were significantly protected, being rejected by the beetles. This is the first direct evidence that oil gland secretions provide soft-bodied juvenile oribatids with chemical protection against large arthropod predators.

Triggering chemical defense in an oribatid mite using artificial stimuli.

Most oribatid mites are well known for their exocrine oil gland secretions, from which more than a hundred different chemical components (hydrocarbons, terpenes, aromatics and alkaloids) have been described. The biological functions of these secretions have remained enigmatic for most species, but alarm-pheromonal and allomonal functions have been hypothesized, and demonstrated in some cases. Here, we tested different experimental stimuli to induce the release of defensive secretions in the model oribatid mite Archegozetes longisetosus Aoki. Whereas various mechanical stimuli did not result in a reproducible and complete expulsion of oil gland secretions, repeated treatments with hexane led to complete discharge. Life history parameters such as survival, development and reproduction were not influenced by the hexane treatment. Repeated hexane treatments also resulted in a complete depletion of oil glands in Euphthiracarus cribrarius Berlese.

Integrative taxonomy: Combining morphological, molecular and chemical data for species delineation in the parthenogenetic Trhypochthonius tectorum complex (Acari, Oribatida, Trhypochthoniidae).

BACKGROUND: There is a long-standing controversial about how parthenogenetic species can be defined in absence of a generally accepted species concept for this reproductive mode. An integrative approach was suggested, combining molecular and morphological data to identify distinct monophyletic entities. Using this approach, speciation of parthenogenetic lineages was recently demonstrated for groups of bdelloid rotifers and oribatid mites. Trhypochthonius tectorum, an oribatid mite from the entirely parthenogenetic desmonomatan family Trhypochthoniidae, is traditionally treated as a single species in Central Europe. However, two new morphological lineages were recently proposed for some Austrian populations of T. tectorum, and were described as novel subspecies (T. silvestris europaeus) or form (T. japonicus forma occidentalis). We used the morphological and morphometrical data which led to this separation, and added mitochondrial and nuclear DNA sequences and the chemical composition of complex exocrine oil gland secretions to test this taxonomical hypothesis. This is the first attempt to combine these three types of data for integrative taxonomical investigations of oribatid mites. RESULTS: We show that the previous European species T. tectorum represents a species complex consisting of three distinct lineages in Austria (T.tectorum, T. silvestris europaeus and T. japonicus forma occidentalis), each clearly separated by morphology, oil gland secretion profiles and mitochondrial cox1 sequences. This diversification happened in the last ten million years. In contrast to these results, no variation among the lineages was found in the nuclear 18S rDNA. CONCLUSIONS: Our approach combined morphological, molecular and chemical data to investigate diversity and species delineation in a parthenogenetic oribatid mite species complex. To date, hypotheses of a general oribatid mite phylogeny are manifold, and mostly based on single-method approaches. Probably, the integrative approach proposed here can be used to uncover further hidden biodiversity of glandulate Oribatida and help to build up more stable phylogenetic hypotheses in the future.

Tasty but protected--first evidence of chemical defense in oribatid mites.

Oribatid mites (Acari, Oribatida) represent one of the most abundant and speciose groups of microarthropods in the decomposer food webs of soils, but little is known of their top-down regulation by predators. Oribatids are relatively long-lived and have numerous morphological defensive adaptations, and so have been proposed to live in 'enemy-free space'. Most also possess a pair of large exocrine oil glands that produce species-specific mixtures of hydrocarbons, terpenes, aromatics, and alkaloids with presumably allomonal functions, although their adaptive value has never been tested empirically. We developed a protocol that discharges the oil glands of the model oribatid species, Archegozetes longisetosus. and offered 'disarmed' individuals as prey to polyphagous Stenus beetles (Staphylinidae), using untreated mites as controls. Stenus juno fed on disarmed mites with behavioral sequences and success rates similar to those observed when they prey on springtails, a common prey. In contrast, mites from the control group with full glands were almost completely rejected; contact with the gland region elicited a strong reaction and cleaning behavior in the beetle. This is the first evidence of an adaptive value of oribatid mite oil gland secretions for chemical defense. The protocol of discharging oil glands should facilitate future studies on top-down control of oribatid mites that aim to differentiate between morphological and chemical aspects of defensive strategies.

Odontomachus davidsoni sp. nov. (Hymenoptera, Formicidae), a new conspicuous trap-jaw ant from Ecuador.

One of the largest species in its genus, Odontomachus davidsoni Hoenle, Lattke & Donoso, sp. nov. is described from workers and queens collected at lowland forests in the Chocó-Darién bioregion in coastal Ecuador. The workers are characterized by their uniform red coloration, their large size (16-18 mm body length), and their frontal head striation that reaches the occipital margin. DNA barcodes (COI) and high resolution 2D images of the type material are provided, as well as an updated key for the Neotropical species of Odontomachus. In addition, a three-dimensional digital model of the worker holotype and a paratype queen scanned with DISC3D based on photogrammetry is presented, for the first time in a species description. Findings of large and conspicuous new species are uncommon around the world and suggest that these Ecuadorian rainforests may conceal many more natural treasures that deserve conservation.

ResumenDescribimos una especie nueva, entre las más grandes conocidas del género Odontomachus. La nueva especie, Odontomachus davidsoni Hoenle, Lattke & Donoso, sp. nov., es descrita a partir de obreras y reinas recolectadas en bosques de tierras bajas en la bioregión Chocó-Darién de la costa del Ecuador. Las obreras se caracterizan por su coloración rojiza uniforme, su grande tamaño (largo del cuerpo 16­18 mm), y la estriación del frente cefálico que alcanza el margen occipital. Proveemos códigos de barras de DNA (COI) e imágenes 2D de alta resolución para el material tipo y así como una guía de identificación actualizada para las especies neotropicales del género Odontomachus. Por primera vez en una descripción de especies, se proveen imágenes 3D de un escáner fotogramétrico DISC3D. Los hallazgos de especies grandes y conspicuas son poco comunes alrededor del mundo y sugieren que estos bosques lluviosos ecuatorianos pueden contener muchos más tesoros naturales que merecen ser conservados.

Introducing Biomedisa as an open-source online platform for biomedical image segmentation.

We present Biomedisa, a free and easy-to-use open-source online platform developed for semi-automatic segmentation of large volumetric images. The segmentation is based on a smart interpolation of sparsely pre-segmented slices taking into account the complete underlying image data. Biomedisa is particularly valuable when little a priori knowledge is available, e.g. for the dense annotation of the training data for a deep neural network. The platform is accessible through a web browser and requires no complex and tedious configuration of software and model parameters, thus addressing the needs of scientists without substantial computational expertise. We demonstrate that Biomedisa can drastically reduce both the time and human effort required to segment large images. It achieves a significant improvement over the conventional approach of densely pre-segmented slices with subsequent morphological interpolation as well as compared to segmentation tools that also consider the underlying image data. Biomedisa can be used for different 3D imaging modalities and various biomedical applications.