Using continous wavelet analysis for monitoring wheat yellow rust in different infestation stages based on unmanned aerial vehicle hyperspectral images.

Yellow rust is the most extensive disease in wheat cultivation, seriously affecting crop quality and yield. This study proposes sensitive wavelet features (WFs) for wheat yellow rust monitoring based on unmanned aerial vehicle hyperspectral imagery of different infestation stages [26 days after inoculation (26 DAI) and 42 DAI]. Furthermore, we evaluated the monitoring ability of WFs and vegetation indices on wheat yellow rust through linear discriminant analysis and support vector machine (SVM) classification frameworks in different infestation stages, respectively. The results show that WFs-SVM have promising potential for wheat yellow rust monitoring in both the 26 DAI and 42 DAI stages.

Nonlinear Changes in Dryland Vegetation Greenness over East Inner Mongolia, China, in Recent Years from Satellite Time Series.

Knowledge of the dynamics of dryland vegetation in recent years is essential for combating desertification. Here, we aimed to characterize nonlinear changes in dryland vegetation greenness over East Inner Mongolia, an ecotone of forest-grassland-cropland in northern China, with time series of Moderate-resolution Imaging Spectroradiometer (MODIS) enhanced vegetation index (EVI) and GEOV2 leaf area index (LAI) values during 2000 to 2016. Changes in the growing season EVI and LAI were detected with the polynomial change fitting method. This method characterizes nonlinear changes in time series by polynomial fitting with the highest polynomial order of three, and simultaneously provides an estimation of monotonic trends over the time series by linear fitting. The relative contribution of climatic factors (precipitation and temperature) to changes in the EVI and LAI were analyzed using linear regression. In general, we observed similar patterns of change in the EVI and LAI. Nonlinear changes in the EVI were detected for about 21% of the region, and for the LAI, the percentage of nonlinear changes was about 16%. The major types of nonlinear changes include decrease-increase, decrease-increase-decrease, and increase-decrease-increase changes. For the overall monotonic trends, very small percentages of decrease (less than 1%) and widespread increases in the EVI and LAI were detected. Furthermore, large areas where the effects of climate variation on vegetation changes were not significant were observed for all major types of change in the grasslands and rainfed croplands. Changes with an increase-decrease-increase process had large percentages of non-significant effects of climate. The further analysis of increase-decrease-increase changes in different regions suggest that the increasing phases were likely to be mainly driven by human activities, and droughts induced the decreasing phase. In particular, some increase-decrease changes were observed around the large patch of bare areas. This may be an early signal of degradation, to which more attention needs to be paid to combat desertification.

Molecular characterization of bovine leukemia virus reveals existence of genotype 4 in Chinese dairy cattle.

Bovine leukemia virus (BLV) causes enzootic bovine leucosis and is widely spread worldwide, except several European countries, Australia and New Zealand. Although BLV is highly prevalent in China, information about the genetic diversity and evolutionary dynamics of BLV among Chinese dairy herds is still lacking. To determine the genetic variability of BLV, 219 cows from four cities of Ningxia province of China were screened for BLV infection by fluorescence resonance energy transfer (FRET)-PCR and sequencing, 16 selected positive samples were subjected to molecular characterization. Phylogenetic analysis using the neighbor-joining (NJ) method on complete sequences of envelope (env) gene of BLV obtained from China and those available in GenBank (representing BLV genotypes 1-10) revealed that those Chinese strains belonged to genotypes 4 and 6. Totally, 23 mutations were identified and 16 of them were determined to be unique mutations among Chinese strains. Alignment of the deduced amino acid sequences demonstrated six mutations in glycoprotein 51 (gp51) and three mutations in glycoprotein 30 (gp30) located in the identified neutralizing domain (ND), CD8+ T cell epitope, E-epitope, B-epitope, gp51N12 and cytoplasmic domain of transmembrane protein. This study reported for the first time the BLV genotype 4 in China, and further studies are warranted to compare its immunogenicity and pathogenicity with other BLV genotypes.

Identification of Fusarium Head Blight in Winter Wheat Ears Using Continuous Wavelet Analysis.

Fusarium head blight in winter wheat ears produces the highly toxic mycotoxin deoxynivalenol (DON), which is a serious problem affecting human and animal health. Disease identification directly on ears is important for selective harvesting. This study aimed to investigate the spectroscopic identification of Fusarium head blight by applying continuous wavelet analysis (CWA) to the reflectance spectra (350 to 2500 nm) of wheat ears. First, continuous wavelet transform was used on each of the reflectance spectra and a wavelet power scalogram as a function of wavelength location and the scale of decomposition was generated. The coefficient of determination R2 between wavelet powers and the disease infestation ratio were calculated by using linear regression. The intersections of the top 5% regions ranking in descending order based on the R2 values and the statistically significant (p-value of t-test < 0.001) wavelet regions were retained as the sensitive wavelet feature regions. The wavelet powers with the highest R2 values of each sensitive region were retained as the initial wavelet features. A threshold was set for selecting the optimal wavelet features based on the coefficient of correlation R obtained via the correlation analysis among the initial wavelet features. The results identified six wavelet features which include (471 nm, scale 4), (696 nm, scale 1), (841 nm, scale 4), (963 nm, scale 3), (1069 nm, scale 3), and (2272 nm, scale 4). A model for identifying Fusarium head blight based on the six wavelet features was then established using Fisher linear discriminant analysis. The model performed well, providing an overall accuracy of 88.7% and a kappa coefficient of 0.775, suggesting that the spectral features obtained using CWA can potentially reflect the infestation of Fusarium head blight in winter wheat ears.

New Spectral Index for Detecting Wheat Yellow Rust Using Sentinel-2 Multispectral Imagery.

Yellow rust is one of the most destructive diseases for winter wheat and has led to a significant decrease in winter wheat quality and yield. Identifying and monitoring yellow rust is of great importance for guiding agricultural production over large areas. Compared with traditional crop disease discrimination methods, remote sensing technology has proven to be a useful tool for accomplishing such a task at large scale. This study explores the potential of the Sentinel-2 Multispectral Instrument (MSI), a newly launched satellite with refined spatial resolution and three red-edge bands, for discriminating between yellow rust infection severities (i.e., healthy, slight, and severe) in winter wheat. The corresponding simulative multispectral bands for the Sentinel-2 sensor were calculated by the sensor's relative spectral response (RSR) function based on the in situ hyperspectral data acquired at the canopy level. Three Sentinel-2 spectral bands, including B4 (Red), B5 (Re1), and B7 (Re3), were found to be sensitive bands using the random forest (RF) method. A new multispectral index, the Red Edge Disease Stress Index (REDSI), which consists of these sensitive bands, was proposed to detect yellow rust infection at different severity levels. The overall identification accuracy for REDSI was 84.1% and the kappa coefficient was 0.76. Moreover, REDSI performed better than other commonly used disease spectral indexes for yellow rust discrimination at the canopy scale. The optimal threshold method was adopted for mapping yellow rust infection at regional scales based on realistic Sentinel-2 multispectral image data to further assess REDSI's ability for yellow rust detection. The overall accuracy was 85.2% and kappa coefficient was 0.67, which was found through validation against a set of field survey data. This study suggests that the Sentinel-2 MSI has the potential for yellow rust discrimination, and the newly proposed REDSI has great robustness and generalized ability for yellow rust detection at canopy and regional scales. Furthermore, our results suggest that the above remote sensing technology can be used to provide scientific guidance for monitoring and precise management of crop diseases and pests.

Integrating Early Growth Information to Monitor Winter Wheat Powdery Mildew Using Multi-Temporal Landsat-8 Imagery.

Powdery mildew is one of the dominant diseases in winter wheat. The accurate monitoring of powdery mildew is important for crop management and production. Satellite-based remote sensing monitoring has been proven as an efficient tool for regional disease detection and monitoring. However, the information provided by single-date satellite scene is hard to achieve acceptable accuracy for powdery mildew disease, and incorporation of early period contextual information of winter wheat can improve this situation. In this study, a multi-temporal satellite data based powdery mildew detecting approach had been developed for regional disease mapping. Firstly, the Lansat-8 scenes that covered six winter wheat growth periods (expressed in chronological order as periods 1 to 6) were collected to calculate typical vegetation indices (VIs), which include disease water stress index (DSWI), optimized soil adjusted vegetation index (OSAVI), shortwave infrared water stress index (SIWSI), and triangular vegetation index (TVI). A multi-temporal VIs-based k-nearest neighbors (KNN) approach was then developed to produce the regional disease distribution. Meanwhile, a backward stepwise elimination method was used to confirm the optimal multi-temporal combination for KNN monitoring model. A classification and regression tree (CART) and back propagation neural networks (BPNN) approaches were used for comparison and validation of initial results. VIs of all periods except 1 and 3 provided the best multi-temporal data set for winter wheat powdery mildew monitoring. Compared with the traditional single-date (period 6) image, the multi-temporal images based KNN approach provided more disease information during the disease development, and had an accuracy of 84.6%. Meanwhile, the accuracy of the proposed approach had 11.5% and 3.8% higher than the multi-temporal images-based CART and BPNN models', respectively. These results suggest that the use of satellite images for early critical disease infection periods is essential for improving the accuracy of monitoring models. Additionally, satellite imagery also assists in monitoring powdery mildew in late wheat growth periods.

Identification of Wheat Yellow Rust Using Optimal Three-Band Spectral Indices in Different Growth Stages.

Yellow rust, a widely known destructive wheat disease, affects wheat quality and causes large economic losses in wheat production. Hyperspectral remote sensing has shown potential for the detection of plant disease. This study aimed to analyze the spectral reflectance of the wheat canopy in the range of 350⁻1000 nm and to develop optimal spectral indices to detect yellow rust disease in wheat at different growth stages. The sensitive wavebands of healthy and infected wheat were located in the range 460⁻720 nm in the early-mid growth stage (from booting to anthesis), and in the ranges 568⁻709 nm and 725⁻1000 nm in the mid-late growth stage (from filling to milky ripeness), respectively. All possible three-band combinations over these sensitive wavebands were calculated as the forms of PRI (Photochemical Reflectance Index) and ARI (Anthocyanin Reflectance Index) at different growth stages and assessed to determine whether they could be used for estimating the severity of yellow rust disease. The optimal spectral index for estimating wheat infected by yellow rust disease was PRI (570, 525, 705) during the early-mid growth stage with R² of 0.669, and ARI (860, 790, 750) during the mid-late growth stage with R² of 0.888. Comparison of the proposed spectral indices with previously reported vegetation indices were able to satisfactorily discriminate wheat yellow rust. The classification accuracy for PRI (570, 525, 705) was 80.6% and the kappa coefficient was 0.61 in early-mid growth stage, and the classification accuracy for ARI (860, 790, 750) was 91.9% and the kappa coefficient was 0.75 in mid-late growth stage. The classification accuracy of the two indices reached 84.1% and 93.2% in the early-mid and mid-late growth stages in the validated dataset, respectively. We conclude that the three-band spectral indices PRI (570, 525, 705) and ARI (860, 790, 750) are optimal for monitoring yellow rust infection in these two growth stages, respectively. Our method is expected to provide a technical basis for wheat disease detection and prevention in the early-mid growth stage, and the estimation of yield losses in the mid-late growth stage.

Partial Least Square Discriminant Analysis Based on Normalized Two-Stage Vegetation Indices for Mapping Damage from Rice Diseases Using PlanetScope Datasets.

In recent decades, rice disease co-epidemics have caused tremendous damage to crop production in both China and Southeast Asia. A variety of remote sensing based approaches have been developed and applied to map diseases distribution using coarse- to moderate-resolution imagery. However, the detection and discrimination of various disease species infecting rice were seldom assessed using high spatial resolution data. The aims of this study were (1) to develop a set of normalized two-stage vegetation indices (VIs) for characterizing the progressive development of different diseases with rice; (2) to explore the performance of combined normalized two-stage VIs in partial least square discriminant analysis (PLS-DA); and (3) to map and evaluate the damage caused by rice diseases at fine spatial scales, for the first time using bi-temporal, high spatial resolution imagery from PlanetScope datasets at a 3 m spatial resolution. Our findings suggest that the primary biophysical parameters caused by different disease (e.g., changes in leaf area, pigment contents, or canopy morphology) can be captured using combined normalized two-stage VIs. PLS-DA was able to classify rice diseases at a sub-field scale, with an overall accuracy of 75.62% and a Kappa value of 0.47. The approach was successfully applied during a typical co-epidemic outbreak of rice dwarf (Rice dwarf virus, RDV), rice blast (Magnaporthe oryzae), and glume blight (Phyllosticta glumarum) in Guangxi Province, China. Furthermore, our approach highlighted the feasibility of the method in capturing heterogeneous disease patterns at fine spatial scales over the large spatial extents.

The influence of landscape's dynamics on the Oriental Migratory Locust habitat change based on the time-series satellite data.

Landscape structure and vegetation coverage are important habitat conditions for Oriental Migratory Locust infestation in East Asia. Characterizing the landscape's dynamics of locust habitat is meaningful for reducing the occupation of locusts and limiting potential risks. To better understand causes and consequences of landscape pattern and locust habitat, it is not enough to simply detect locust habitat of each year. Rather, landcover transitions causing the change of locust habitat area must also be explored. This paper proposes an integrated implement to quantify the influence of landscape's dynamics on locust habitat changes based on three tenets: 1) temporal context can provide insight into the land cover transitions, 2) the detection of locust habitat area is operated on patches rather than pixels with full consideration of landscape's ecology, 3) the modeling must be flexible and unsupervised. These ideas have not been previously explored in demonstrating the possible role of changes in landscape characteristics to drive locust habitat transitions. The case study focuses on the Dagang district, a hot spot of locust infestation of China, from 2000 to 2015. Firstly, the seasonal characteristics of typical landcovers in NDVI, TVI, and LST were extracted from fused Landsat-MODIS surface reflectance imagery. Subsequently, a landscape membership-based random forest (LMRF) algorithm was proposed to quantify the landscape structure and hydrological regimen of locust habitat at the patch level. Finally, we investigated the correlations between the specific landcover transitions and habitat changes. Within the 16 years observations, our findings suggest that the sparse reeds and weeds in the vicinity of beach land, riverbanks, and wetlands are the dominant landscape structure associated with locust habitat change (R2 > 0.68), and the fluctuation in the water level is a key ecological factor to facilitate the locust habitat change (R2 > 0.61). These results are instrumental for developing precision pesticide use to reduce environmental degradation, and providing positive perspectives for ecological management and transformation of locust habitats.

Off-Nadir Hyperspectral Sensing for Estimation of Vertical Profile of Leaf Chlorophyll Content within Wheat Canopies.

Monitoring the vertical profile of leaf chlorophyll (Chl) content within winter wheat canopies is of significant importance for revealing the real nutritional status of the crop. Information on the vertical profile of Chl content is not accessible to nadir-viewing remote or proximal sensing. Off-nadir or multi-angle sensing would provide effective means to detect leaf Chl content in different vertical layers. However, adequate information on the selection of sensitive spectral bands and spectral index formulas for vertical leaf Chl content estimation is not yet available. In this study, all possible two-band and three-band combinations over spectral bands in normalized difference vegetation index (NDVI)-, simple ratio (SR)- and chlorophyll index (CI)-like types of indices at different viewing angles were calculated and assessed for their capability of estimating leaf Chl for three vertical layers of wheat canopies. The vertical profiles of Chl showed top-down declining trends and the patterns of band combinations sensitive to leaf Chl content varied among different vertical layers. Results indicated that the combinations of green band (520 nm) with NIR bands were efficient in estimating upper leaf Chl content, whereas the red edge (695 nm) paired with NIR bands were dominant in quantifying leaf Chl in the lower layers. Correlations between published spectral indices and all NDVI-, SR- and CI-like types of indices and vertical distribution of Chl content showed that reflectance measured from 50°, 30° and 20° backscattering viewing angles were the most promising to obtain information on leaf Chl in the upper-, middle-, and bottom-layer, respectively. Three types of optimized spectral indices improved the accuracy for vertical leaf Chl content estimation. The optimized three-band CI-like index performed the best in the estimation of vertical distribution of leaf Chl content, with R² of 0.84-0.69, and RMSE of 5.37-5.56 µg/cm² from the top to the bottom layers, while the optimized SR-like index was recommended for the bottom Chl estimation due to its simple and universal form. We suggest that it is necessary to take into account the penetration characteristic of the light inside the canopy for different Chl absorption regions of the spectrum and the formula used to derive spectral index when estimating the vertical profile of leaf Chl content using off-nadir hyperspectral data.

The genome of the pear (Pyrus bretschneideri Rehd.).

The draft genome of the pear (Pyrus bretschneideri) using a combination of BAC-by-BAC and next-generation sequencing is reported. A 512.0-Mb sequence corresponding to 97.1% of the estimated genome size of this highly heterozygous species is assembled with 194× coverage. High-density genetic maps comprising 2005 SNP markers anchored 75.5% of the sequence to all 17 chromosomes. The pear genome encodes 42,812 protein-coding genes, and of these, ~28.5% encode multiple isoforms. Repetitive sequences of 271.9 Mb in length, accounting for 53.1% of the pear genome, are identified. Simulation of eudicots to the ancestor of Rosaceae has reconstructed nine ancestral chromosomes. Pear and apple diverged from each other ~5.4-21.5 million years ago, and a recent whole-genome duplication (WGD) event must have occurred 30-45 MYA prior to their divergence, but following divergence from strawberry. When compared with the apple genome sequence, size differences between the apple and pear genomes are confirmed mainly due to the presence of repetitive sequences predominantly contributed by transposable elements (TEs), while genic regions are similar in both species. Genes critical for self-incompatibility, lignified stone cells (a unique feature of pear fruit), sorbitol metabolism, and volatile compounds of fruit have also been identified. Multiple candidate SFB genes appear as tandem repeats in the S-locus region of pear; while lignin synthesis-related gene family expansion and highly expressed gene families of HCT, C3'H, and CCOMT contribute to high accumulation of both G-lignin and S-lignin. Moreover, alpha-linolenic acid metabolism is a key pathway for aroma in pear fruit.

[Quantitative Identification of Yellow Rust and Powdery Mildew in Winter Wheat Based on Wavelet Feature].

Powdery mildew (Blumeria graminis) and stripe rust (Puccinia striiformis f. sp. Tritici) are two of the most prevalent and serious winter wheat diseases in the field, which caused heavy yield loss of winter wheat all over the world. It is necessary to quantitatively identify different diseases for spraying specific fungicides. This study examined the potential of quantitative distinction of powdery mildew and yellow rust by using hyperspectral data with continuous wavelet transform at canopy level. Spectral normalization was processing prior to other data analysis, given the differences of the groups in cultivars and soil environment. Then, continuous wavelet features were extracted from normalized spectral bands using continuous wavelet transform. Correlation analysis and independent t-test were used conjunctively to obtain sensitive spectral bands and continuous wavelet features of 350～1 300 nm, and then, principal component analysis was done to eliminate the redundancy of the spectral features. After that, Fisher linear discriminant models of powdery mildew, stripe rust and normal sample were built based on the principal components of SBs, WFs, and the combination of SBs & WFs, respectively. Finally, the methods of leave-one-out and 55 samples which have no share in model building were used to validate the models. The accuracies of classification were analyzed, it was indicated that the overall accuracies with 92.7% and 90.4% of the models based on WFs, were superior to those of SFs with 65.5% and 61.5%; However, the classification accuracies of Fisher 80-55 were higher but no different than leave-one-out cross validation model, which was possibly related to randomness of training samples selection. The overall accuracies with 94.6% and 91.1% of the models based on SBs & WFs were the highest; The producer' accuracies of powdery mildew and healthy samples based on SBs & WFs were improved more than 10% than those of WFs in Fisher 80-55. Focusing on the discriminant accuracy of different disease, yellow rust can be discriminated in the model based on both WFs and SBs & WFs with higher accuracy; the user' accuracy and producer' accuracy were all up to 100%. The results show great potential of continuous wavelet features in discriminating different disease stresses, and provide theoretical basis for crop disease identification in wide range using remote sensing image.

Generating Daily Synthetic Landsat Imagery by Combining Landsat and MODIS Data.

Owing to low temporal resolution and cloud interference, there is a shortage of high spatial resolution remote sensing data. To address this problem, this study introduces a modified spatial and temporal data fusion approach (MSTDFA) to generate daily synthetic Landsat imagery. This algorithm was designed to avoid the limitations of the conditional spatial temporal data fusion approach (STDFA) including the constant window for disaggregation and the sensor difference. An adaptive window size selection method is proposed in this study to select the best window size and moving steps for the disaggregation of coarse pixels. The linear regression method is used to remove the influence of differences in sensor systems using disaggregated mean coarse reflectance by testing and validation in two study areas located in Xinjiang Province, China. The results show that the MSTDFA algorithm can generate daily synthetic Landsat imagery with a high correlation coefficient (R) ranged from 0.646 to 0.986 between synthetic images and the actual observations. We further show that MSTDFA can be applied to 250 m 16-day MODIS MOD13Q1 products and the Landsat Normalized Different Vegetation Index (NDVI) data by generating a synthetic NDVI image highly similar to actual Landsat NDVI observation with a high R of 0.97.

Spatial variability of available soil microelements in an ecological functional zone of Beijing.

Understanding the spatial variability of soil microelements and its influencing factors is of importance for a number of applications such as scientifically formulated fertilizer and environmental protection. This study used descriptive statistics and geostatistics to investigate the spatial variability of available soil Fe, Mn, Cu, and Zn contents in agricultural topsoil (0-20 cm) in an ecological functional zone located at Yanqing County, Beijing, China. Kriging method was applied to map the spatial patterns of available soil Fe, Mn, Cu, and Zn contents. Results showed that the available soil Cu had a widest spatial correlation distance (e.g., 9.6 km), which for available soil Fe, Mn, and Zn were only 1.29, 2.58, and 0.99 km, respectively. The values of C 0/sill for available soil Fe and Zn were 0.12 and 0.11, respectively, demonstrating that the spatial heterogeneity was mainly due to structural factors. The available soil Mn and Cu had the larger values of C 0/sill (i.e., 0.50 and 0.44 for Mn and Cu, respectively), which showed a medium spatial correlation. Mapping of the spatial patterns of the four microelements showed that the decrease trend of available soil Fe and Mn were from northeast to southwest across the study area. The highest amount of available soil Cu was distributed in the middle of the study area surrounding urban region which presented as a "single island". The highest amount of available soil Zn was mainly distributed in the north and south of the study area. One-way analysis of variance for the influencing factors showed that the lithology of parental materials, soil organic matter, and pH were important factors affecting spatial variability of the available microelements. The topography only had a significant influence on the spatial variability of available soil Fe and Mn contents, parental materials, and the land use types had little influence on the spatial variability.

[Comparative Research on Estimating the Severity of Yellow Rust in Winter Wheat].

In order to improve the accuracy of wheat yellow rust disease severity using remote sensing and to find the optimum inversion model of wheat diseases, the canopy reflectance and disease index (DI) of winter wheat under different severity stripe rust were acquired. The three models of PLS (Partial Least Square), BP neural network using seven hyperspectral vegetation indices which have significant relationship with the occurrence of disease and vegetation index (PRI) were adopted to build a feasible regression model for detecting the disease severity. The results showed that PLS performed much better. The inversion accuracy of PLS method is best than of the VI (PRI, Photochemical Reflectance Index) and BP neural network models. The coefficients of determination (R2) of three methods to estimate disease severity between predicted and measured values are 0.936, 0.918 and 0.767 respectively. Evaluation was made between the estimated DI and the measured DI, indicating that the model based on PLS is suitable for monitoring wheat disease. In addition, to explore the different contributions of diverse types of vegetation index to the models, the paper attempts to use NDVI, GNDVI and MSR which on behalf of vegetation greenness and NDWI and MSI that represents the moisture content to be input variables of PLS model. The results showed that, for the wheat yellow rust disease, changes in chlorophyll content is more sensitive to the disease severity than the changes in water content of the canopy. However, the accuracy of the two models are both lower than predicted when participating in all seven vegetation indices, namely using several species of vegetation indices tends to be more accurate than that using single category. It indicated that it has great potential for evaluating wheat disease severity by using hyper-spectral remote sensing.

[Estimating Winter Wheat Nitrogen Vertical Distribution Based on Bidirectional Canopy Reflected Spectrum].

The vertical distribution of crop nitrogen is increased with plant height, timely and non-damaging measurement of crop nitrogen vertical distribution is critical for the crop production and quality, improving fertilizer utilization and reducing environmental impact. The objective of this study was to discuss the method of estimating winter wheat nitrogen vertical distribution by exploring bidirectional reflectance distribution function (BRDF) data using partial least square (PLS) algorithm. The canopy reflectance at nadir, +/-50 degrees and +/- 60 degrees; at nadir, +/- 30 degrees and +/- 40 degrees; and at nadir, +/- 20 degrees and +/- 30 degrees were selected to estimate foliage nitrogen density (FND) at upper layer, middle layer and bottom layer, respectively. Three PLS analysis models with FND as the dependent variable and vegetation indices at corresponding angles as the explicative variables were. established. The impact of soil reflectance and the canopy non-photosynthetic materials, was minimized by seven kinds of modifying vegetation indices with the ratio R700/R670. The estimated accuracy is significant raised at upper layer, middle layer and bottom layer in modeling experiment. Independent model verification selected the best three vegetation indices for further research. The research result showed that the modified Green normalized difference vegetation index (GNDVI) shows better performance than other vegetation indices at each layer, which means modified GNDVI could be used in estimating winter wheat nitrogen vertical distribution

Estimation of nitrogen vertical distribution by bi-directional canopy reflectance in winter wheat.

Timely measurement of vertical foliage nitrogen distribution is critical for increasing crop yield and reducing environmental impact. In this study, a novel method with partial least square regression (PLSR) and vegetation indices was developed to determine optimal models for extracting vertical foliage nitrogen distribution of winter wheat by using bi-directional reflectance distribution function (BRDF) data. The BRDF data were collected from ground-based hyperspectral reflectance measurements recorded at the Xiaotangshan Precision Agriculture Experimental Base in 2003, 2004 and 2007. The view zenith angles (1) at nadir, 40° and 50°; (2) at nadir, 30° and 40°; and (3) at nadir, 20° and 30° were selected as optical view angles to estimate foliage nitrogen density (FND) at an upper, middle and bottom layer, respectively. For each layer, three optimal PLSR analysis models with FND as a dependent variable and two vegetation indices (nitrogen reflectance index (NRI), normalized pigment chlorophyll index (NPCI) or a combination of NRI and NPCI) at corresponding angles as explanatory variables were established. The experimental results from an independent model verification demonstrated that the PLSR analysis models with the combination of NRI and NPCI as the explanatory variables were the most accurate in estimating FND for each layer. The coefficients of determination (R2) of this model between upper layer-, middle layer- and bottom layer-derived and laboratory-measured foliage nitrogen density were 0.7335, 0.7336, 0.6746, respectively.

Evolution of the aroma volatiles of pear fruits supplemented with fatty acid metabolic precursors.

To examine the biochemical metabolism of aroma volatiles derived from fatty acids, pear fruits were incubated in vitro with metabolic precursors of these compounds. Aroma volatiles, especially esters, were significantly increased, both qualitatively and quantitatively, in pear fruits fed on fatty acid metabolic precursors. Cultivars having different flavor characteristics had distinctly different aroma volatile metabolisms. More esters were formed in fruity-flavored "Nanguoli" fruits than in green-flavored "Dangshansuli" fruits fed on the same quantities of linoleic acid and linolenic acid. Hexanal and hexanol were more efficient metabolic intermediates for volatile synthesis than linoleic acid and linolenic acid. Hexyl esters were the predominant esters produced by pear fruits fed on hexanol, and their contents in "Dangshansuli" fruits were higher than in "Nanguoli" fruits. Hexyl esters and hexanoate esters were the primary esters produced in pear fruits fed on hexanal, however the content of hexyl ester in "Dangshansuli" was approximately three times that in "Nanguoli". The higher contents of hexyl esters in "Dangshansuli" may have resulted from a higher level of hexanol derived from hexanal. In conclusion, the synthesis of aroma volatiles was largely dependent on the metabolic precursors presented.

[Inversion of LAI by considering the hotspot effect for different geometrical wheat].

Aimed to deal with the limitation of canopy geometry to crop LAI inversion accuracy a new LAI inversion method for different geometrical winter wheat was proposed based on hotspot indices with field-measured experimental data. The present paper analyzed bidirectional reflectance characteristics of erective and loose varieties at red (680 nm) and NIR wavelengths (800 nm and 860 nm) and developed modified normalized difference between hotspot and dark-spot (MNDHD) and hotspot and dark-spot ratio index (HDRI) using hotspot and dark-spot index (HDS) and normalized difference between hotspot and dark-spot (NDHD) for reference. Combined indices were proposed in the form of the product between HDS, NDHD, MNDHD, HDRI and three ordinary vegetation indices NDVI, SR and EVI to inverse LAI for erective and loose wheat. The analysis results showed that LAI inversion accuracy of erective wheat Jing411 were 0.9431 and 0.9092 retrieved from the combined indices between NDVI and MNDHD and HDRI at 860 nm which were better than that of HDS and NDHD, the LAI inversion accuracy of loose wheat Zhongyou9507 were 0.9648 and 0.8956 retrieved from the combined indices between SR and HDRI and MNDHD at 800 nm which were also higher than that of HDS and NDHD. It was finally concluded that the combined indices between hotspot-signature indices and ordinary vegetation indices were feasible enough to inverse LAI for different crop geometrical wheat and multiangle remote sensing data was much more advantageous than perpendicular observation data to extract crop structural parameters.

[Research on universality of least squares support vector machine method for estimating leaf area index of winter wheat].

Leaf area index (LAI) is one of the most important parameters for evaluating winter wheat growth status and forecasting its yield. Hyperspectral remote sensing is a new technical approach that can be used to acquire the instant information of vegetation LAI at large scale. This study aims to explore the capability of least squares support vector machines (LS-SVM) method to winter wheat LAI estimation with hyperspectral data. After the compression of PHI airborne data with principal component analysis (PCA), the sample set based on the measured LAI data and hyperspectral reflectance data was established. Then the method of LS-SVM was developed respectively to estimate winter wheat LAI under four different conditions, to be specific, different plant type cultivars, different periods, different nitrogenous fertilizer and water conditions. Compared with traditional NDVI model estimation results, each experiment of LS-SVM model yielded higher determination coefficient as well as lower RMSE value, which meant that the LS-SVM method performed better than the NDVI method. In addition, NDVI model was unstable for winter wheat under the condition of different plant type cultivars, different nitrogenous fertilizer and different water, while the LS-SVM model showed good stability. Therefore, LS-SVM has high accuracy for learning and considerable universality for estimation of LAI of winter wheat under different conditions using hyperspectral data.