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1.
Nat Chem Biol ; 19(12): 1524-1531, 2023 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-37620399

RESUMEN

Bio-refining lignocellulose could provide a sustainable supply of fuels and fine chemicals; however, the challenges associated with the co-utilization of xylose and glucose typically compromise the efficiency of lignocellulose conversion. Here we engineered the industrial yeast Ogataea polymorpha (Hansenula polymorpha) for lignocellulose biorefinery by facilitating the co-utilization of glucose and xylose to optimize the production of free fatty acids (FFAs) and 3-hydroxypropionic acid (3-HP) from lignocellulose. We rewired the central metabolism for the enhanced supply of acetyl-coenzyme A and nicotinamide adenine dinucleotide phosphate hydrogen, obtaining 30.0 g l-1 of FFAs from glucose, with productivity of up to 0.27 g l-1 h-1. Strengthening xylose uptake and catabolism promoted the synchronous utilization of glucose and xylose, which enabled the production of 38.2 g l-1 and 7.0 g l-1 FFAs from the glucose-xylose mixture and lignocellulosic hydrolysates, respectively. Finally, this efficient cell factory was metabolically transformed for 3-HP production with the highest titer of 79.6 g l-1 in fed-batch fermentation in mixed glucose and xylose.


Asunto(s)
Glucosa , Xilosa , Xilosa/metabolismo , Glucosa/metabolismo , Lignina , Fermentación , Ingeniería Metabólica
2.
Biotechnol Bioeng ; 119(11): 3162-3177, 2022 11.
Artículo en Inglés | MEDLINE | ID: mdl-36030484

RESUMEN

Bioconversion is being regarded as a promising way for lignin valorization because it enables funneling diverse lignin components into single compounds, overcoming the heterogeneity of lignin. Although numerous lignin-derived aromatic monomers have been funneled to target compounds in previous studies, the bioconversion of low-molecular-weight lignin (LMW-lignin) fragments, for example, lignin-derived dimers, has been rarely systematically studied, impeding further conversion of lignin. In this study, coculture systems were designed and developed to funnel multiple lignin-derived dimers to cis, cis-muconate and gallate by combining lignin-derived dimers cleavage bacterium Sphingobium sp. and monomers conversion bacterium Rhodococcus opacus. With the developed coculture systems, ß-O-4 type dimer guaiacylglycerol-ß-guaiacyl ether, 4-O-5 type dimer 4,4'-dihydroxydiphenyl ether, ß-5 type dimer balanophonin, ß-ß type dimer pinoresinol, ß-1 type dimer 1,2-bis(4-hydroxy-3-methoxyphehyl)-1,3-propanediol and 5-5 type dimer 5,5'-dehydrodivanillate were converted to cis, cis-muconate. Additionally, the developed coculture systems also showed potential in conversion of lignin-derived dimers to gallate. The application of alkali lignin for cis, cis-muconate production further demonstrated the effectiveness of the designed coculture systems. Overall, the developed coculture systems are beneficial to lignin biological valorization, and also provide references for the valorization of other bio-resources.


Asunto(s)
Lignina , Sphingomonadaceae , Álcalis , Técnicas de Cocultivo , Éteres , Rhodococcus
3.
Appl Microbiol Biotechnol ; 105(4): 1745-1758, 2021 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-33523248

RESUMEN

Yarrowia lipolytica strain is a promising cell factory for the conversion of lignocellulose to biofuels and bioproducts. Despite the inherent robustness of this strain, further improvements to lignocellulose-derived inhibitors toxicity tolerance of Y. lipolytica are also required to achieve industrial application. Here, adaptive laboratory evolution was employed with increasing concentrations of ferulic acid. The adaptive laboratory evolution experiments led to evolve Y. lipolytica strain yl-XYL + *FA*4 with increased tolerance to ferulic acid as compared to the parental strain. Specifically, the evolved strain could tolerate 1.5 g/L ferulic acid, whereas 0.5 g/L ferulic acid could cause about 90% lethality of the parental strain. Transcriptome analysis of the evolved strain revealed several targets underlying toxicity tolerance enhancements. YALI0_E25201g, YALI0_F05984g, YALI0_B18854g, and YALI0_F16731g were among the highest upregulated genes, and the beneficial contributions of these genes were verified via reverse engineering. Recombinant strains with overexpressing each of these four genes obtained enhanced tolerance to ferulic acid as compared to the control strain. Fortunately, recombinant strains with overexpression of YALI0_E25201g, YALI0_B18854g, and YALI0_F16731g individually also obtained enhanced tolerance to vanillic acid. Overall, this work demonstrated a whole strain improvement cycle by "non-rational" metabolic engineering and presented new targets to modify Y. lipolytica for microbial lignocellulose valorization. KEY POINTS: • Adaptive evolution improved the ferulic acid tolerance of Yarrowia lipolytica • Transcriptome sequence was applied to analyze the ferulic acid tolerate strain • Three genes were demonstrated for both ferulic acid and vanillic acid tolerance.


Asunto(s)
Yarrowia , Ácidos Cumáricos/farmacología , Laboratorios , Ingeniería Metabólica , Yarrowia/genética
4.
J Biol Chem ; 294(47): 17962-17977, 2019 11 22.
Artículo en Inglés | MEDLINE | ID: mdl-31619521

RESUMEN

Streptococcus suis is a globally distributed zoonotic pathogen associated with meningitis and septicemia in humans, posing a serious threat to public health. To successfully invade and disseminate within its host, this bacterium must overcome the innate immune system. The antimicrobial peptide LL-37 impedes invading pathogens by directly perforating bacterial membranes and stimulating the immune function of neutrophils, which are the major effector cells against S. suis However, little is known about the biological relationship between S. suis and LL-37 and how this bacterium adapts to and evades LL-37-mediated immune responses. In this study by using an array of approaches, including enzyme, chemotaxis, cytokine assays, quantitative RT-PCR, and CD spectroscopy, we found that the cysteine protease ApdS from S. suis cleaves LL-37 and thereby plays a key role in the interaction between S. suis and human neutrophils. S. suis infection stimulated LL-37 production in human neutrophils, and S. suis exposure to LL-37 up-regulated ApdS protease expression in the bacterium. We observed that ApdS targets and rapidly cleaves LL-37, impairing its bactericidal activity against S. suis We attributed this effect to the decreased helical content of the secondary structure in the truncated peptide. Moreover, ApdS rescued S. suis from killing by human neutrophils and neutrophil extracellular traps because LL-37 truncation attenuated neutrophil chemotaxis and inhibited the formation of extracellular traps and the production of reactive oxygen species. Altogether, our findings reveal an immunosuppressive strategy of S. suis whereby the bacterium blunts the innate host defenses via ApdS protease-mediated LL-37 cleavage.


Asunto(s)
Péptidos Catiónicos Antimicrobianos/metabolismo , Proteínas Bacterianas/metabolismo , Proteasas de Cisteína/metabolismo , Evasión Inmune , Inmunidad Innata , Streptococcus suis/enzimología , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Quimiotaxis , Proteasas de Cisteína/química , Proteasas de Cisteína/genética , Trampas Extracelulares/metabolismo , Regulación Bacteriana de la Expresión Génica , Humanos , Viabilidad Microbiana , Neutrófilos/inmunología , Neutrófilos/microbiología , Estructura Secundaria de Proteína , Especies Reactivas de Oxígeno/metabolismo , Infecciones Estreptocócicas/inmunología , Streptococcus suis/genética , Células THP-1 , Catelicidinas
5.
FEMS Yeast Res ; 20(5)2020 08 01.
Artículo en Inglés | MEDLINE | ID: mdl-32614407

RESUMEN

The red yeast Rhodosporidium toruloides naturally produces microbial lipids and carotenoids. In the past decade or so, many studies demonstrated R. toruloides as a promising platform for lipid production owing to its diverse substrate appetites, robust stress resistance and other favorable features. Also, significant progresses have been made in genome sequencing, multi-omic analysis and genome-scale modeling, thus illuminating the molecular basis behind its physiology, metabolism and response to environmental stresses. At the same time, genetic parts and tools are continuously being developed to manipulate this distinctive organism. Engineered R. toruloides strains are emerging for enhanced production of conventional lipids, functional lipids as well as other interesting metabolites. This review updates those progresses and highlights future directions for advanced biotechnological applications.


Asunto(s)
Microbiología Industrial , Lípidos/biosíntesis , Ingeniería Metabólica , Rhodotorula/metabolismo , Rhodotorula/genética
6.
Biotechnol Bioeng ; 117(7): 2008-2022, 2020 07.
Artículo en Inglés | MEDLINE | ID: mdl-32170874

RESUMEN

Synthetic microbial communities have become a focus of biotechnological research since they can overcome several of the limitations of single-specie cultures. A paradigmatic example is Clostridium cellulovorans DSM 743B, which can decompose lignocellulose but cannot produce butanol. Clostridium beijerinckii NCIMB 8052 however, is unable to use lignocellulose but can produce high amounts of butanol from simple sugars. In our previous studies, both organisms were cocultured to produce butanol by consolidated bioprocessing. However, such consolidated bioprocessing implementation strongly depends on pH regulation. Since low pH (pH 4.5-5.5) is required for butanol fermentation, C. cellulovorans cannot grow well and saccharify sufficient lignocellulose to feed both strains at a pH below 6.4. To overcome this bottleneck, this study engineered C. cellulovorans by adaptive laboratory evolution, inactivating cell wall lyases genes (Clocel_0798 and Clocel_2169), and overexpressing agmatine deiminase genes (augA, encoded by Cbei_1922) from C. beijerinckii NCIMB 8052. The generated strain WZQ36: 743B*6.0*3△lyt0798△lyt2169-(pXY1-Pthl -augA) can tolerate a pH of 5.5. Finally, the alcohol aldehyde dehydrogenase gene adhE1 from Clostridium acetobutylicum ATCC 824 was introduced into the strain to enable butanol production at low pH, in coordination with solvent fermentation of C. beijerinckii in consortium. The engineered consortium produced 3.94 g/L butanol without pH control within 83 hr, which is more than 5-fold of the level achieved by wild consortia under the same conditions. This exploration represents a proof of concept on how to combine metabolic and evolutionary engineering to coordinate coculture of a synthetic microbial community.


Asunto(s)
Butanoles/metabolismo , Clostridium/genética , Ingeniería Genética/métodos , Clostridium/metabolismo , Clostridium acetobutylicum/genética , Clostridium acetobutylicum/metabolismo , Clostridium beijerinckii/genética , Clostridium beijerinckii/metabolismo , Concentración de Iones de Hidrógeno , Ingeniería Metabólica/métodos , Microbiota
7.
Appl Microbiol Biotechnol ; 104(19): 8171-8186, 2020 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-32845366

RESUMEN

Rhamnolipids have extensive potential applications and are the most promising biosurfactants for commercialization. The efficient and accurate identification and analysis of these are important to their production, application and commercialization. Accordingly, significant efforts have been made to identify and analyse rhamnolipids during screening of producing strains, fermentation and application processes. Cationic cetyltrimethylammonium bromide-methylene blue (CTAB-MB) test combines a series of indirect assays to efficiently assist in the primary screening of rhamnolipids-producing strains, while the secretion of rhamnolipids by these strains can be identified through TLC, FTIR, NMR, electrospray ionization mass spectrometry (ESI-MS) and HPLC-MS analysis. Rhamnolipids can be quantified by colorimetric methods requiring the use of concentrated acid, and this approach has the advantages of reliability, simplicity, low-cost and excellent reproducibility with very low technological requirements. HPLC-MS can also be employed as required as a more accurate quantification method. In addition, HPLC-ELSD has been established as the internationally acceptable measure of rhamnolipids for commercial purposes. The preparation of well-accepted rhamnolipids standards and modifications of analysis operations are essential to further enhance the accuracy and improve the simplicity of rhamnolipid analysis.Key points• Current status of R&D works on determination of rhamnolipids is listed• Advantages and disadvantages of various types analysis are summarized• Limitations of current rhamnolipid quantification are discussed Graphical abstract.


Asunto(s)
Glucolípidos , Pseudomonas aeruginosa , Cromatografía Líquida de Alta Presión , Reproducibilidad de los Resultados
8.
Int J Mol Sci ; 21(5)2020 Mar 09.
Artículo en Inglés | MEDLINE | ID: mdl-32182913

RESUMEN

Mammalian cathelicidins act as the potent microbicidal molecules for controlling bacterial infection, and are considered promising alternatives to traditional antibiotics. Their ability to modulate host immune responses, as well as their bactericidal activities, is essential for therapeutic interventions. In this study, we compared the bactericidal activities, antibiofilm activities and immune-modulatory properties of cathelicidins BMAP-27, BMAP-34, mCRAMP, and LL-37, and evaluated the therapeutic efficacy of the combination of BMAP-27 and LL-37 using a mouse pulmonary infection model. Our results showed that all of the four cathelicidins effectively killed bacteria via rapid induction of membrane permeabilization, and BMAP-27 exhibited the most excellent bactericidal activity against diverse bacterial pathogens. BMAP-27, mCRAMP, and LL-37 effectively inhibited biofilm formation, while BMAP-34, mCRAMP and LL-37 exerted immunomodulatory functions with varying degrees of efficacy by stimulating the chemotaxis of neutrophils, inducing the production of reactive oxygen species, and facilitating the formation of neutrophil extracellular traps. Of note, the combination of BMAP-27 and LL-37 effectively enhanced the clearance of Pseudomonas aeruginosa and reduced the organ injury in vivo. Together, these findings highlight that identifying the appropriate synergistic combination of mammalian cathelicidins with different beneficial properties may be an effective strategy against bacterial infection.


Asunto(s)
Bacterias/efectos de los fármacos , Biopelículas/efectos de los fármacos , Catelicidinas/farmacología , Factores Inmunológicos/farmacología , Mamíferos/metabolismo , Neutrófilos/efectos de los fármacos , Animales , Antibacterianos/farmacología , Péptidos Catiónicos Antimicrobianos/farmacología , Femenino , Humanos , Pulmón/efectos de los fármacos , Ratones , Ratones Endogámicos BALB C , Pruebas de Sensibilidad Microbiana/métodos
9.
Biotechnol Bioeng ; 114(8): 1713-1720, 2017 08.
Artículo en Inglés | MEDLINE | ID: mdl-28369757

RESUMEN

High enzyme loading and low productivity are two major issues impeding low cost ethanol production from lignocellulosic biomass. This work applied rapid bioconversion with integrated recycle technology (RaBIT) and extractive ammonia (EA) pretreatment for conversion of corn stover (CS) to ethanol at high solids loading. Enzymes were recycled via recycling unhydrolyzed solids. Enzymatic hydrolysis with recycled enzymes and fermentation with recycled yeast cells were studied. Both enzymatic hydrolysis time and fermentation time were shortened to 24 h. Ethanol productivity was enhanced by two times and enzyme loading was reduced by 30%. Glucan and xylan conversions reached as high as 98% with an enzyme loading of as low as 8.4 mg protein per g glucan. The overall ethanol yield was 227 g ethanol/kg EA-CS (191 g ethanol/kg untreated CS). Biotechnol. Bioeng. 2017;114: 1713-1720. © 2017 Wiley Periodicals, Inc.


Asunto(s)
Amoníaco/química , Celulasa/química , Etanol/aislamiento & purificación , Etanol/metabolismo , Componentes Aéreos de las Plantas/microbiología , Saccharomyces cerevisiae/metabolismo , Zea mays/microbiología , Reactores Biológicos/microbiología , Hidrólisis , Lignina/química , Lignina/metabolismo , Extracción Líquido-Líquido/métodos , Componentes Aéreos de las Plantas/química , Reciclaje/métodos , Integración de Sistemas , Zea mays/química
10.
Biotechnol Bioeng ; 114(5): 980-989, 2017 05.
Artículo en Inglés | MEDLINE | ID: mdl-27888662

RESUMEN

High solids loadings (>18 wt%) in enzymatic hydrolysis and fermentation are desired for lignocellulosic biofuel production at a high titer and low cost. However, sugar conversion and ethanol yield decrease with increasing solids loading. The factor(s) limiting sugar conversion at high solids loading is not clearly understood. In the present study, we investigated the effect of solids loading on simultaneous saccharification and co-fermentation (SSCF) of AFEX™ (ammonia fiber expansion) pretreated corn stover for ethanol production using a xylose fermenting strain Saccharomyces cerevisiae 424A(LNH-ST). Decreased sugar conversion and ethanol yield with increasing solids loading were also observed. End-product (ethanol) was proven to be the major cause of this issue and increased degradation products with increasing solids loading was also a cause. For the first time, we show that with in situ removal of end-product by performing SSCF aerobically, sugar conversion stopped decreasing with increasing solids loading and monomeric sugar conversion reached as high as 93% at a high solids loading of 24.9 wt%. Techno-economic analysis was employed to explore the economic possibilities of cellulosic ethanol production at high solids loadings. The results suggest that low-cost in situ removal of ethanol during SSCF would significantly improve the economics of high solids loading processes. Biotechnol. Bioeng. 2017;114: 980-989. © 2016 Wiley Periodicals, Inc.


Asunto(s)
Biocombustibles , Reactores Biológicos , Etanol/metabolismo , Lignina/metabolismo , Amoníaco/metabolismo , Biocombustibles/análisis , Biocombustibles/economía , Reactores Biológicos/economía , Reactores Biológicos/microbiología , Etanol/análisis , Fermentación , Glucosa/metabolismo , Hidrólisis , Saccharomyces cerevisiae/metabolismo , Xilosa/metabolismo , Zea mays/química
11.
J Ind Microbiol Biotechnol ; 44(9): 1261-1272, 2017 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-28536841

RESUMEN

The Rapid Bioconversion with Integrated recycling Technology (RaBIT) process uses enzyme and yeast recycling to improve cellulosic ethanol production economics. The previous versions of the RaBIT process exhibited decreased xylose consumption using cell recycle for a variety of different micro-organisms. Process changes were tested in an attempt to eliminate the xylose consumption decrease. Three different RaBIT process changes were evaluated in this work including (1) shortening the fermentation time, (2) fed-batch hydrolysate addition, and (3) selective cell recycling using a settling method. Shorting the RaBIT fermentation process to 11 h and introducing fed-batch hydrolysate addition eliminated any xylose consumption decrease over ten fermentation cycles; otherwise, decreased xylose consumption was apparent by the third cell recycle event. However, partial removal of yeast cells during recycle was not economical when compared to recycling all yeast cells.


Asunto(s)
Técnicas de Cultivo Celular por Lotes , Separación Celular , Etanol/metabolismo , Fermentación , Lignina/metabolismo , Saccharomyces cerevisiae/metabolismo , Zea mays/metabolismo , Biomasa , Recuento de Células , Etanol/economía , Etanol/provisión & distribución , Xilosa/metabolismo
12.
Biotechnol Bioeng ; 113(8): 1676-90, 2016 08.
Artículo en Inglés | MEDLINE | ID: mdl-26724417

RESUMEN

Oleaginous yeasts can convert sugars to lipids with fatty acid profiles similar to those of vegetable oils, making them attractive for production of biodiesel. Lignocellulosic biomass is an attractive source of sugars for yeast lipid production because it is abundant, potentially low cost, and renewable. However, lignocellulosic hydrolyzates are laden with byproducts which inhibit microbial growth and metabolism. With the goal of identifying oleaginous yeast strains able to convert plant biomass to lipids, we screened 32 strains from the ARS Culture Collection, Peoria, IL to identify four robust strains able to produce high lipid concentrations from both acid and base-pretreated biomass. The screening was arranged in two tiers using undetoxified enzyme hydrolyzates of ammonia fiber expansion (AFEX)-pretreated cornstover as the primary screening medium and acid-pretreated switch grass as the secondary screening medium applied to strains passing the primary screen. Hydrolyzates were prepared at ∼18-20% solids loading to provide ∼110 g/L sugars at ∼56:39:5 mass ratio glucose:xylose:arabinose. A two stage process boosting the molar C:N ratio from 60 to well above 400 in undetoxified switchgrass hydrolyzate was optimized with respect to nitrogen source, C:N, and carbon loading. Using this process three strains were able to consume acetic acid and nearly all available sugars to accumulate 50-65% of cell biomass as lipid (w/w), to produce 25-30 g/L lipid at 0.12-0.22 g/L/h and 0.13-0.15 g/g or 39-45% of the theoretical yield at pH 6 and 7, a performance unprecedented in lignocellulosic hydrolyzates. Three of the top strains have not previously been reported for the bioconversion of lignocellulose to lipids. The successful identification and development of top-performing lipid-producing yeast in lignocellulose hydrolyzates is expected to advance the economic feasibility of high quality biodiesel and jet fuels from renewable biomass, expanding the market potential for lignocellulose-derived fuels beyond ethanol for automobiles to the entire U.S. transportation market. Biotechnol. Bioeng. 2016;113: 1676-1690. © 2016 Wiley Periodicals, Inc.


Asunto(s)
Biocombustibles , Biomasa , Lignina/metabolismo , Lípidos/análisis , Levaduras/metabolismo , Metabolismo de los Lípidos/fisiología , Levaduras/fisiología
13.
Appl Microbiol Biotechnol ; 100(16): 7349-58, 2016 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-27364625

RESUMEN

Apple pomace samples were evaluated for conversion to ethanol at industrial relevant conditions. Biomass degradation efficiency by commercial enzymes was evaluated at 20 % solid loading for dilute sulfuric acid, calcium oxide, and autoclave without any chemical (control) apple pomace samples. The control and calcium oxide-pretreated pomace provided similar sugar yields, while dilute sulfuric acid pretreatment resulted in reduced sugar yields. The control and calcium oxide-pretreated pomace hydrolysate were fermented to ethanol using a native Saccharomyces cerevisiae yeast strain, producing 38.8 and 36.9 g/L of ethanol, respectively. When control apple pomace sample loading was increased from 20 to 30 %, 57.5 and 50.1 g/L of glucose and fructose was produced, respectively. Lastly, we found that unhydrolyzed solids (UHS) present during fermentation had little effect on ethanol yield, as 53.6 and 53.8 g/L of ethanol were produced with and without UHS, respectively. Overall, ethanol yields were 134 g per kg of dry apple pomace. A complete process mass balance for enzyme hydrolysis and ethanol fermentation is provided in this manuscript. These results show that apple pomace is an excellent feedstock for producing ethanol that could be either used as biofuel or as beverage.


Asunto(s)
Biocombustibles/microbiología , Etanol/metabolismo , Fermentación/fisiología , Malus/metabolismo , Saccharomyces cerevisiae/metabolismo , Bebidas , Biomasa , Compuestos de Calcio/química , Glucosa/metabolismo , Óxidos/química , Ácidos Sulfúricos/química
14.
Biotechnol Bioeng ; 111(1): 152-64, 2014 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-24404570

RESUMEN

During lignocellulosic ethanol fermentation, yeasts are exposed to various lignocellulose-derived inhibitors, which disrupt the efficiency of hexose and pentose co-fermentation. To understand the metabolic response of fermentation microbes to these inhibitors, a comparative metabolomic investigation was performed on a xylose-fermenting Saccharomyces cerevisiae 424A (LNH-ST) and its parental strain 4124 with and without three typical inhibitors (furfural, acetic acid, and phenol). Three traits were uncovered according to fermentation results. First, the growth of strain 424A (LNH-ST) was more sensitive to inhibitors than strain 4124. Through metabolomic analysis, the variance of trehalose, cadaverine, glutamate and g-aminobutyric acid (GABA) suggested that strain 424A (LNH-ST) had a lower capability to buffer redox changes caused by inhibitors. Second, lower ethanol yield in glucose and xylose co-fermentation than glucose fermentation was observed in strain 424A (LNH-ST), which was considered to be correlated with the generation of xylitol, as well as the reduced levels of lysine, glutamate, glycine and isoleucine in strain 424A (LNH-ST). Accumulation of glycerol, galactinol and mannitol was also observed in strain 424A (LNH-ST) during xylose fermentation. Third, xylose utilization of strain 424A (LNH-ST) was more significantly disturbed by inhibitors than glucose utilization. Through the analysis of fermentation and metabolomic results, it was suggested that xylose catabolism and energy supply, rather than xylose uptake, were the limiting steps in xylose utilization in the presence of inhibitors.


Asunto(s)
Fermentación/fisiología , Glucosa/metabolismo , Metabolómica/métodos , Saccharomyces cerevisiae/metabolismo , Xilosa/metabolismo , Ácido Acético/farmacología , Aminoácidos/metabolismo , Análisis por Conglomerados , Etanol/metabolismo , Furaldehído/farmacología , Análisis de los Mínimos Cuadrados , Metaboloma/efectos de los fármacos , Fenol/farmacología , Saccharomyces cerevisiae/efectos de los fármacos
15.
Appl Microbiol Biotechnol ; 98(17): 7645-57, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-25052467

RESUMEN

Microbial oil is a potential alternative to food/plant-derived biodiesel fuel. Our previous screening studies identified a wide range of oleaginous yeast species, using a defined laboratory medium known to stimulate lipid accumulation. In this study, the ability of these yeasts to grow and accumulate lipids was further investigated in synthetic hydrolysate (SynH) and authentic ammonia fiber expansion (AFEX™)-pretreated corn stover hydrolysate (ACSH). Most yeast strains tested were able to accumulate lipids in SynH, but only a few were able to grow and accumulate lipids in ACSH medium. Cryptococcus humicola UCDFST 10-1004 was able to accumulate as high as 15.5 g/L lipids, out of a total of 36 g/L cellular biomass when grown in ACSH, with a cellular lipid content of 40 % of cell dry weight. This lipid production is among the highest reported values for oleaginous yeasts grown in authentic hydrolysate. Preculturing in SynH media with xylose as sole carbon source enabled yeasts to assimilate both glucose and xylose more efficiently in the subsequent hydrolysate medium. This study demonstrates that ACSH is a suitable medium for certain oleaginous yeasts to convert lignocellullosic sugars to triacylglycerols for production of biodiesel and other valuable oleochemicals.


Asunto(s)
Metabolismo de los Lípidos , Levaduras/clasificación , Levaduras/metabolismo , Zea mays/metabolismo , Medios de Cultivo/química , Glucosa/metabolismo , Xilosa/metabolismo , Levaduras/crecimiento & desarrollo
16.
Proc Natl Acad Sci U S A ; 108(32): 13212-7, 2011 Aug 09.
Artículo en Inglés | MEDLINE | ID: mdl-21788494

RESUMEN

Cellulosic biomass is an abundant and underused substrate for biofuel production. The inability of many microbes to metabolize the pentose sugars abundant within hemicellulose creates specific challenges for microbial biofuel production from cellulosic material. Although engineered strains of Saccharomyces cerevisiae can use the pentose xylose, the fermentative capacity pales in comparison with glucose, limiting the economic feasibility of industrial fermentations. To better understand xylose utilization for subsequent microbial engineering, we sequenced the genomes of two xylose-fermenting, beetle-associated fungi, Spathaspora passalidarum and Candida tenuis. To identify genes involved in xylose metabolism, we applied a comparative genomic approach across 14 Ascomycete genomes, mapping phenotypes and genotypes onto the fungal phylogeny, and measured genomic expression across five Hemiascomycete species with different xylose-consumption phenotypes. This approach implicated many genes and processes involved in xylose assimilation. Several of these genes significantly improved xylose utilization when engineered into S. cerevisiae, demonstrating the power of comparative methods in rapidly identifying genes for biomass conversion while reflecting on fungal ecology.


Asunto(s)
Biocombustibles/microbiología , Fermentación/genética , Hongos/genética , Genómica/métodos , Xilosa/metabolismo , Candida/genética , Secuencia Conservada/genética , Perfilación de la Expresión Génica , Regulación Fúngica de la Expresión Génica , Genes Fúngicos/genética , Genotipo , Fenotipo , Filogenia , Especificidad de la Especie
17.
Biotechnol Adv ; 72: 108339, 2024.
Artículo en Inglés | MEDLINE | ID: mdl-38508427

RESUMEN

As a sustainable and renewable alternative to petroleum fuels, advanced biofuels shoulder the responsibility of energy saving, emission reduction and environmental protection. Traditional engineering of cell factories for production of advanced biofuels lacks efficient high-throughput screening tools and regulating systems, impeding the improvement of cellular productivity and yield. Transcription factor-based biosensors have been widely applied to monitor and regulate microbial cell factory products due to the advantages of fast detection and in-situ screening. This review updates the design and application of transcription factor-based biosensors tailored for advanced biofuels and related intermediates. The construction and genetic parts selection principle of biosensors are discussed. Strategies to enhance the performance of biosensor, including regulating promoter strength and RBS strength, optimizing plasmid copy number, implementing genetic amplifier, and modulating the structure of transcription factor, have also been summarized. We further review the application of biosensors in high-throughput screening of new metabolic engineering targets, evolution engineering, confirmation of protein function, and dynamic regulation of metabolic flux for higher production of advanced biofuels. At last, we discuss the current limitations and future trends of transcription factor-based biosensors.


Asunto(s)
Técnicas Biosensibles , Factores de Transcripción , Factores de Transcripción/genética , Factores de Transcripción/metabolismo , Biocombustibles , Ingeniería Metabólica , Regulación de la Expresión Génica
18.
Int J Biol Macromol ; 274(Pt 2): 133339, 2024 Jun 23.
Artículo en Inglés | MEDLINE | ID: mdl-38917916

RESUMEN

The alarming rise in antibiotic resistance necessitates urgent action, particularly against the backdrop of resistant bacteria evolving to render conventional antibiotics less effective, leading to an increase in morbidity, mortality, and healthcare costs. Vancomycin-loaded Metal-Organic Framework (MOF) nanocomposites have emerged as a promising strategy in enhancing the eradication of pathogenic bacteria. This study introduces lignin as a novel synergistic agent in Vancomycin-loaded MOF (Lig-Van-MOF), which substantially enhances the antibacterial activity against drug-resistant bacteria. Lig-Van-MOF exhibits six-fold lower minimum inhibitory concentration (MICs) than free vancomycin and Van-MOF with a much higher antibacterial potential against sensitive and resistant strains of Staphylococcus aureus and Escherichia coli. Remarkably, it reduces biofilms of these strains by over 85 % in minimal biofilm inhibitory concentration (MBIC). Utilization of lignin to modify surface properties of MOFs improves their adhesion to bacterial membranes and boosts the local concentration of Reactive Oxygen Species (ROS) via unique synergistic mechanism. Additionally, lignin induces substantial cell deformation in treated bacterial cells. It confirms the superior bactericidal properties of Lig-Van-MOF against Staphylococcus species, underlining its significant potential as a bionanomaterial designed to combat antibiotic resistance effectively. This research paves the way for novel antibacterial platforms that optimize cost-efficiency and broaden microbial resistance management applications.

19.
Bioresour Technol ; 396: 130429, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38336214

RESUMEN

This study presents a life-cycle analysis using energy conversion characteristics as an evaluation index to assess the feasibility of this production method. The results indicate that for a system processing 1000 kg/h of wheat straw, the addition of 12000 kg/h of 2 wt% H2SO4 and 120 kg/h of CH3COONa yields 340,000 L/h of H2 and 348.6 kW of electricity. The energy conversion efficiency from the feedstock to the product is 21.4 %, while the efficiency from the hydrolysate to the product is 62.2 %. The total CO2 emission is 27.1 kg/h. Variations in the hydrolysate have the most significant impact on energy conversion efficiency. This study explores the feasibility of industrial-scale biohydrogen production via dark-photo fermentation from wheat straw and analyzes the energy characteristic indices and the sensitivity of these indices to key parameters.


Asunto(s)
Hidrógeno , Triticum , Fermentación , Electricidad
20.
Biotechnol Bioeng ; 110(5): 1302-11, 2013 May.
Artículo en Inglés | MEDLINE | ID: mdl-23192401

RESUMEN

High productivity processes are critical for commercial production of cellulosic ethanol. One high productivity process-continuous hydrolysis and fermentation-has been applied in corn ethanol industry. However, little research related to this process has been conducted on cellulosic ethanol production. Here, we report and compare the kinetics of both batch SHF (separate hydrolysis and co-fermentation) and SSCF (simultaneous saccharification and co-fermentation) of AFEX™ (Ammonia Fiber Expansion) pretreated corn stover (AFEX™-CS). Subsequently, we designed a SSCF process to evaluate continuous hydrolysis and fermentation performance on AFEX™-CS in a series of continuous stirred tank reactors (CSTRs). Based on similar sugar to ethanol conversions (around 80% glucose-to-ethanol conversion and 47% xylose-to-ethanol conversion), the overall process ethanol productivity for continuous SSCF was 2.3- and 1.8-fold higher than batch SHF and SSCF, respectively. Slow xylose fermentation and high concentrations of xylose oligomers were the major factors limiting further enhancement of productivity.


Asunto(s)
Biotecnología/métodos , Etanol/metabolismo , Saccharomyces cerevisiae/metabolismo , Zea mays/metabolismo , Biocombustibles , Reactores Biológicos , Enzimas/metabolismo , Fermentación , Hidrólisis , Viabilidad Microbiana , Saccharomyces cerevisiae/aislamiento & purificación , Xilosa/metabolismo , Zea mays/química
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