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1.
Proc Natl Acad Sci U S A ; 119(8)2022 02 22.
Artículo en Inglés | MEDLINE | ID: mdl-35131898

RESUMEN

Type I interferons (IFN-I) exert pleiotropic biological effects during viral infections, balancing virus control versus immune-mediated pathologies, and have been successfully employed for the treatment of viral diseases. Humans express 12 IFN-alpha (α) subtypes, which activate downstream signaling cascades and result in distinct patterns of immune responses and differential antiviral responses. Inborn errors in IFN-I immunity and the presence of anti-IFN autoantibodies account for very severe courses of COVID-19; therefore, early administration of IFN-I may be protective against life-threatening disease. Here we comprehensively analyzed the antiviral activity of all IFNα subtypes against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) to identify the underlying immune signatures and explore their therapeutic potential. Prophylaxis of primary human airway epithelial cells (hAEC) with different IFNα subtypes during SARS-CoV-2 infection uncovered distinct functional classes with high, intermediate, and low antiviral IFNs. In particular, IFNα5 showed superior antiviral activity against SARS-CoV-2 infection in vitro and in SARS-CoV-2-infected mice in vivo. Dose dependency studies further displayed additive effects upon coadministration with the broad antiviral drug remdesivir in cell culture. Transcriptomic analysis of IFN-treated hAEC revealed different transcriptional signatures, uncovering distinct, intersecting, and prototypical genes of individual IFNα subtypes. Global proteomic analyses systematically assessed the abundance of specific antiviral key effector molecules which are involved in IFN-I signaling pathways, negative regulation of viral processes, and immune effector processes for the potent antiviral IFNα5. Taken together, our data provide a systemic, multimodular definition of antiviral host responses mediated by defined IFN-I. This knowledge will support the development of novel therapeutic approaches against SARS-CoV-2.


Asunto(s)
Tratamiento Farmacológico de COVID-19 , Interferón-alfa/farmacología , SARS-CoV-2/efectos de los fármacos , Transcriptoma , Replicación Viral/efectos de los fármacos , Animales , COVID-19/inmunología , COVID-19/virología , Chlorocebus aethiops , Clonación Molecular , Modelos Animales de Enfermedad , Escherichia coli/genética , Escherichia coli/metabolismo , Perfilación de la Expresión Génica , Regulación de la Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Humanos , Interferón-alfa/genética , Interferón-alfa/inmunología , Ratones , Isoformas de Proteínas/clasificación , Isoformas de Proteínas/genética , Isoformas de Proteínas/inmunología , Isoformas de Proteínas/farmacología , Proteínas Recombinantes/clasificación , Proteínas Recombinantes/genética , Proteínas Recombinantes/inmunología , Proteínas Recombinantes/farmacología , SARS-CoV-2/genética , SARS-CoV-2/inmunología , Transducción de Señal , Células Vero
2.
Anal Chem ; 95(15): 6332-6340, 2023 04 18.
Artículo en Inglés | MEDLINE | ID: mdl-37018485

RESUMEN

Dental plaque biofilm is a complex ecosystem. The distribution of microbial species in the biofilm is heavily influenced by local chemical interactions that result from diverse metabolic activities and the nature of the released molecules. As a relevant example, H2O2-producing bacteria can antagonize disease-associated bacteria, leading to the maintenance of a healthy oral microbiome. Herein, we report the development of a triple-sensor (redox, pH, and H2O2) scanning electrochemical microscopy (SECM) tip capable of simultaneously mapping the pH and H2O2 concentration produced by a dental plaque-derived multispecies biofilm grown on hydroxyapatite. The pH sensor of the triple SECM tip showed a near Nernstian slope of -71.1 ± 2 mV/pH (N = 3), whereas the H2O2 sensor showed a slope of -0.052 ± 0.002 nA/µM H2O2 at pH 7.2 and a detection limit of 1.0 ± 0.2 µM (N = 7). There is no significant difference in the sensitivities of H2O2 sensors at pH 6.2, 7.2, and 8.2 at 95% CI (N = 7). The pH and H2O2 sensors demonstrated excellent reversibility with response times of 3 and 5 s, respectively, along with reliable stability over 4 h at 37 °C. The sensors did not show any cross talk between pH and H2O2 concentration ([H2O2]) measurements, highlighting the accuracy and versatility of the SECM tip. Simultaneous chemical imaging of pH and [H2O2] across the biofilm revealed a clustered distribution of local H2O2 concentrations, ranging from 0 to 17 µM. Conversely, the local pH remained constant at 7.2. The relation of local chemical profiles and the distribution of bacterial species within the oral microbiome was experimentally investigated in the context of bacterial H2O2 antagonism. The benefit of clustered H2O2 production was that the total area of H2O2 produced by smaller clusters was 67% more than that of a single cluster with the same starting number of bacteria. Thus, this triple SECM tip can potentially be used to study local molecular mechanisms that result in dysbiosis of the oral microbiome.


Asunto(s)
Placa Dental , Peróxido de Hidrógeno , Humanos , Peróxido de Hidrógeno/metabolismo , Microscopía Electroquímica de Rastreo/métodos , Ecosistema , Bacterias/metabolismo , Biopelículas , Concentración de Iones de Hidrógeno
3.
Sens Actuators B Chem ; 376(Pt A)2023 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-36688105

RESUMEN

Biofilms are complex three-dimensional microbial communities that adhere to a variety of surfaces and interact with their surroundings. Because of the dynamic nature of biofilm formation, establishing a uniform technique for quantifying and monitoring biofilm volume, shape, and features in real-time is challenging. Herein, we describe a noninvasive electrochemical impedance approach for real-time monitoring of dental plaque-derived multispecies biofilm growth on a range of substrates. A working equation relating electrochemical impedance to live biofilm volume has been developed that is applicable to all three surfaces examined, including glass, dental filling resin, and Ca2+-releasing resin composites. Impedance changes of 2.5, 35, 50, and 65% correlated to biofilm volumes of 0.10 ± 0.01, 16.9 ± 2.2, 29.7 ± 2.3, and 38.6 ± 2.8 µm3/µm2, respectively. We discovered that glass, dental filling resin, and Ca2+-releasing dental composites required approximately 3.5, 4.5, and 6 days, respectively, to achieve a 50% change in impedance. The local pH change at the biofilm-substrate interfaces also monitored with potentiometry pH microsensor, and pH change varied according to biofilm volume. This impedance-based technique can be a useful analytical method for monitoring the growth of biofilms on a variety of substrates in real-time. Therefore, this technique may be beneficial for examining antibacterial properties of novel biomaterials.

4.
Biopolymers ; 112(11): e23463, 2021 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-34214178

RESUMEN

Peptide nucleic acids (PNAs) have primarily been used to achieve therapeutic gene modulation through antisense strategies since their design in the 1990s. However, the application of PNAs as a functional nanomaterial has been more recent. We recently reported that γ-modified peptide nucleic acids (γPNAs) could be used to enable formation of complex, self-assembling nanofibers in select polar aprotic organic solvent mixtures. Here we demonstrate that distinct γPNA strands, each with a high density of γ-modifications can form complex nanostructures at constant temperatures within 30 minutes. Additionally, we demonstrate DNA-assisted isothermal growth of γPNA nanofibers, thereby overcoming a key hurdle for future scale-up of applications related to nanofiber growth and micropatterning.


Asunto(s)
Nanofibras , Nanoestructuras , Ácidos Nucleicos de Péptidos , ADN , Temperatura
5.
Artículo en Inglés | MEDLINE | ID: mdl-31594467

RESUMEN

Carbon nano spheres (CNSs) were synthesized by single step electrochemical synthesis route in ultra-pure water as a medium of synthesis. Characterization of synthesized CNSs was carried out using atomic force microscope (AFM), particle size analyzer, zeta potential analyzer and Fourier Transform Infrared (FTIR) measurements, from which the information about the morphology and functional groups present on the surface of the particles are obtained. The particle size of the CNSs was found to be 6 nm. FTIR spectrum shows the presence of functional groups such as -OH, C≡C, C = C and on the CNSs. Electrochemical and spectroscopic experiments were conducted to determine the interaction of the drug molecule ciprofloxacin (Cf) with CNSs, strong interaction between Cf and CNSs leads to the development of analytical method of detection of Cf using CNSs as the pre-concentrating agent. The detection of limit of the present method is obtained as 0.15 µM at (S/N) ratio of 3. CNSs can be considered as a potential candidate for the fabrication of sensor for high sensitive determination of Cf.


Asunto(s)
Carbono/química , Ciprofloxacina/análisis , Técnicas Electroquímicas/métodos , Contaminantes Ambientales/análisis , Nanosferas/química , Electrodos , Tamaño de la Partícula , Propiedades de Superficie
6.
Emerg Microbes Infect ; 13(1): 2402868, 2024 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-39248230

RESUMEN

The 2017/18 influenza season was characterized by unusual high numbers of severe infections and hospitalizations. Instead of influenza A viruses, this season was dominated by infections with influenza B viruses of the Yamagata lineage. While this IBV/Yam dominance was associated with a vaccine mismatch, a contribution of virus intrinsic features to the clinical severity of the infections was speculated. Here, we performed a molecular and phenotypic characterization of three IBV isolates from patients with severe flu symptoms in 2018 and compared it to an IBV/Yam isolate from 2016 using experimental models of increasing complexity, including human lung explants, lung organoids, and alveolar macrophages. Viral genome sequencing revealed the presence of clade but also isolate specific mutations in all viral genes, except NP, M1, and NEP. Comparative replication kinetics in different cell lines provided further evidence for improved replication fitness, tolerance towards higher temperatures, and the development of immune evasion mechanisms by the 2018 IBV isolates. Most importantly, immunohistochemistry of infected human lung explants revealed an impressively altered cell tropism, extending from AT2 to AT1 cells and macrophages. Finally, transcriptomics of infected human lung explants demonstrated significantly reduced amounts of type I and type III IFNs by the 2018 IBV isolate, supporting the existence of additional immune evasion mechanisms. Our results show that the severeness of the 2017/18 Flu season was not only the result of a vaccine mismatch but was also facilitated by improved adaptation of the circulating IBV strains to the environment of the human lower respiratory tract.


Asunto(s)
Virus de la Influenza B , Gripe Humana , Pulmón , Humanos , Virus de la Influenza B/genética , Virus de la Influenza B/fisiología , Virus de la Influenza B/clasificación , Virus de la Influenza B/inmunología , Gripe Humana/virología , Pulmón/virología , Replicación Viral , Animales , Genoma Viral , Estaciones del Año , Evasión Inmune , Adaptación Fisiológica , Macrófagos Alveolares/virología , Macrófagos Alveolares/inmunología , Tropismo Viral , Filogenia
7.
Blood ; 118(25): e184-91, 2011 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-22034631

RESUMEN

One of the greatest challenges in cell therapy is to minimally invasively deliver a large quantity of viable cells to a tissue of interest with high engraftment efficiency. Low and inefficient homing of systemically delivered mesenchymal stem cells (MSCs), for example, is thought to be a major limitation of existing MSC-based therapeutic approaches, caused predominantly by inadequate expression of cell surface adhesion receptors. Using a platform approach that preserves the MSC phenotype and does not require genetic manipulation, we modified the surface of MSCs with a nanometer-scale polymer construct containing sialyl Lewis(x) (sLe(x)) that is found on the surface of leukocytes and mediates cell rolling within inflamed tissue. The sLe(x) engineered MSCs exhibited a robust rolling response on inflamed endothelium in vivo and homed to inflamed tissue with higher efficiency compared with native MSCs. The modular approach described herein offers a simple method to potentially target any cell type to specific tissues via the circulation.


Asunto(s)
Trasplante de Células Madre Mesenquimatosas/métodos , Células Madre Mesenquimatosas/citología , Células Madre Mesenquimatosas/metabolismo , Oligosacáridos/química , Animales , Adhesión Celular , Diferenciación Celular , Movimiento Celular , Proliferación Celular , Supervivencia Celular , Células Cultivadas , Quimiocina CXCL12/metabolismo , Dinoprostona/metabolismo , Ensayo de Inmunoadsorción Enzimática , Citometría de Flujo , Células HL-60 , Humanos , Factor I del Crecimiento Similar a la Insulina/metabolismo , Integrina beta1/metabolismo , Células Madre Mesenquimatosas/química , Ratones , Ratones Endogámicos BALB C , Selectinas/metabolismo , Antígeno Sialil Lewis X , Antígenos Thy-1/metabolismo , Trasplante Heterólogo
8.
ACS Omega ; 8(37): 33452-33465, 2023 Sep 19.
Artículo en Inglés | MEDLINE | ID: mdl-37744824

RESUMEN

Bismuth vanadate (BiVO4) has been one of the most promising photoanodes for the photoelectrochemical (PEC) water oxidation process. Efforts are still on to overcome the drawbacks of this photoanode to enhance the catalytic efficiency and improve the stability. In the present work, three-dimensional graphene (3D-G) was incorporated inside the BiVO4 matrix, primarily to improve the conductivity of the material. The photoanodes are fabricated with the incorporation of a SnO2 heterojunction and application of cobalt borate (Co-Bi) as a cocatalyst. The incorporation of 3D-G has enhanced the photocurrent from 0.72 o 1.21 mA cm-2 in ITO/SnO2/BiVO4 and ITO/SnO2/3D-G-BiVO4 materials; the photocurrent has been improved from 0.89 to 1.52 mA cm-2 in ITO/SnO2/BiVO4/Co-Bi and ITO/SnO2/3D-G-BiVO4. Semiconductor properties are evaluated from the Mott-Schottky measurements, and the charge transfer and transport kinetics of the PEC process are measured from several photoelectrochemical investigations. Both the charge transport and the charge transfer efficiencies are enhanced upon inclusion of 3D-G into the catalyst system. The lifetime of the charge carrier is observed to be increased. The decrease in the decay kinetics of the holes, enhancement in the open-circuit photovoltage (OCPV), and the resulting modulation of the surface states are responsible for the enhancement in the surface charge transfer process due to the inclusion of 3D-G into the catalytic system. Therefore, the additional role of 3D-G in the modulation of the surface states and release of the Fermi level pinning has made the band alignment between the semiconductor and the analyte better, which resulted in enhanced catalytic performance in the photoelectrochemical oxidation of water.

9.
Antiviral Res ; 209: 105475, 2023 01.
Artículo en Inglés | MEDLINE | ID: mdl-36423831

RESUMEN

SARS-CoV-2 is the causative agent of the immune response-driven disease COVID-19 for which new antiviral and anti-inflammatory treatments are urgently needed to reduce recovery time, risk of death and long COVID development. Here, we demonstrate that the immunoregulatory kinase p38 MAPK is activated during viral entry, mediated by the viral spike protein, and drives the harmful virus-induced inflammatory responses. Using primary human lung explants and lung epithelial organoids, we demonstrate that targeting p38 signal transduction with the selective and clinically pre-evaluated inhibitors PH-797804 and VX-702 markedly reduced the expression of the pro-inflammatory cytokines IL6, CXCL8, CXCL10 and TNF-α during infection, while viral replication and the interferon-mediated antiviral response of the lung epithelial barrier were largely maintained. Furthermore, our results reveal a high level of drug synergism of both p38 inhibitors in co-treatments with the nucleoside analogs Remdesivir and Molnupiravir to suppress viral replication of the SARS-CoV-2 variants of concern, revealing an exciting and novel mode of synergistic action of p38 inhibition. These results open new avenues for the improvement of the current treatment strategies for COVID-19.


Asunto(s)
Antivirales , COVID-19 , Inflamación , Síndrome Post Agudo de COVID-19 , SARS-CoV-2 , Proteínas Quinasas p38 Activadas por Mitógenos , Humanos , Antivirales/farmacología , Antivirales/uso terapéutico , COVID-19/complicaciones , Inflamación/tratamiento farmacológico , Inflamación/virología , Pulmón , Transducción de Señal
10.
Cells ; 11(14)2022 07 14.
Artículo en Inglés | MEDLINE | ID: mdl-35883640

RESUMEN

Respiratory infections with newly emerging zoonotic viruses such as SARS-CoV-2, the etiological agent of COVID-19, often lead to the perturbation of the human innate and adaptive immune responses causing severe disease with high mortality. The responsible mechanisms are commonly virus-specific and often include either over-activated or delayed local interferon responses, which facilitate efficient viral replication in the primary target organ, systemic viral spread, and rapid onset of organ-specific and harmful inflammatory responses. Despite the distinct replication strategies, human infections with SARS-CoV-2 and highly pathogenic avian influenza viruses demonstrate remarkable similarities and differences regarding the mechanisms of immune induction, disease dynamics, as well as the long-term sequelae, which will be discussed in this review. In addition, we will highlight some important lessons about the effectiveness of antiviral and immunomodulatory therapeutic strategies that this pandemic has taught us.


Asunto(s)
COVID-19 , Animales , Antivirales/uso terapéutico , Humanos , Inflamación , Pandemias , SARS-CoV-2
11.
Nanoscale ; 13(14): 6819-6828, 2021 Apr 14.
Artículo en Inglés | MEDLINE | ID: mdl-33885483

RESUMEN

Through targeted binding to the cell membrane, structural DNA nanotechnology has the potential to guide and affix biomolecules such as drugs, growth factors and nanobiosensors to the surfaces of cells. In this study, we investigated the targeted binding efficiency of three distinct DNA origami shapes to cultured endothelial cells via cholesterol anchors. Our results showed that the labeling efficiency is highly dependent on the shape of the origami as well as the number and the location of the binding overhangs. With a uniform surface spacing of binding overhangs, 3D isotropic nanospheres and 1D anisotropic nanorods labeled cells effectively, and the isotropic nanosphere labeling fit well with an independent binding model. Face-decoration and edge-decoration of the anisotropic nanotile were performed to investigate the effects of binding overhang location on cell labeling, and only the edge-decorated nanotiles were successful at labeling cells. Edge proximity studies demonstrated that the labeling efficiency can be modulated in both nanotiles and nanorods by moving the binding overhangs towards the edges and vertices, respectively. Furthermore, we demonstrated that while double-stranded DNA (dsDNA) bridge tethers can rescue the labeling efficiency of the face-decorated rectangular plate, this effect is also dependent on the proximity of bridge tethers to the edges or vertices of the nanostructures. A final comparison of all three nanoshapes revealed that the end-labeled nanorod and the nanosphere achieved the highest absolute labeling intensities, but the highest signal-to-noise ratio, calculated as the ratio of overall labeling to initiator-free background labeling, was achieved by the end-labeled nanorod, with the edge-labeled nanotile coming in second place slightly ahead of the nanosphere. The findings from this study can help us further understand the factors that affect membrane attachment using cholesterol anchors, thus providing guidelines for the rational design of future functional DNA nanostructures.


Asunto(s)
Nanoestructuras , Nanotubos , ADN , Células Endoteliales , Nanotecnología , Conformación de Ácido Nucleico
12.
Evol Med Public Health ; 9(1): 383-392, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34925844

RESUMEN

Research in infection biology aims to understand the complex nature of host-pathogen interactions. While this knowledge facilitates strategies for preventing and treating diseases, it can also be intentionally misused to cause harm. Such dual-use risk is potentially high for highly pathogenic microbes such as Risk Group-3 (RG3) bacteria and RG4 viruses, which could be used in bioterrorism attacks. However, other pathogens such as influenza virus (IV) and enterohemorrhagic Escherichia coli (EHEC), usually classified as RG2 pathogens, also demonstrate high dual-use risk. As the currently approved therapeutics against these pathogens are not satisfactorily effective, previous outbreaks of these pathogens caused enormous public fear, media attention and economic burden. In this interdisciplinary review, we summarize the current perspectives of dual-use research on IV and EHEC, and further highlight the dual-use risk associated with evolutionary experiments with these infectious pathogens. We support the need to carry out experiments pertaining to pathogen evolution, including to gain predictive insights on their evolutionary trajectories, which cannot be otherwise achieved with stand-alone theoretical models and epidemiological data. However, we also advocate for increased awareness and assessment strategies to better quantify the risks-versus-benefits associated with such evolutionary experiments. In addition to building public trust in dual-use research, we propose that these approaches can be extended to other pathogens currently classified as low risk, but bearing high dual-use potential, given the particular pressing nature of their rapid evolutionary potential.

13.
Front Immunol ; 12: 752227, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-34659259

RESUMEN

Since November 2019 the SARS-CoV-2 pandemic has caused nearly 200 million infection and more than 4 million deaths globally (Updated information from the World Health Organization, as on 2nd Aug 2021). Within only one year into the pandemic, several vaccines were designed and reached approval for the immunization of the world population. The remarkable protective effects of the manufactured vaccines are demonstrated in countries with high vaccination rates, such as Israel and UK. However, limited production capacities, poor distribution infrastructures and political hesitations still hamper the availability of vaccines in many countries. In addition, due to the emergency of SARS-CoV-2 variants with immune escape properties towards the vaccines the global numbers of new infections as well as patients developing severe COVID-19, remains high. New studies reported that about 8% of infected individuals develop long term symptoms with strong personal restrictions on private as well as professional level, which contributes to the long socioeconomic problems caused by this pandemic. Until today, emergency use-approved treatment options for COVID-19 are limited to the antiviral Remdesivir, a nucleoside analogue targeting the viral polymerase, the glucocorticosteroide Dexamethasone as well as neutralizing antibodies. The therapeutic benefits of these treatments are under ongoing debate and clinical studies assessing the efficiency of these treatments are still underway. To identify new therapeutic treatments for COVID-19, now and by the post-pandemic era, diverse experimental approaches are under scientific evaluation in companies and scientific research teams all over the world. To accelerate clinical translation of promising candidates, repurposing approaches of known approved drugs are specifically fostered but also novel technologies are being developed and are under investigation. This review summarizes the recent developments from the lab bench as well as the clinical status of emerging therapeutic candidates and discusses possible therapeutic entry points for the treatment strategies with regard to the biology of SARS-CoV-2 and the clinical course of COVID-19.


Asunto(s)
Antivirales/uso terapéutico , Tratamiento Farmacológico de COVID-19 , Vacunas contra la COVID-19/inmunología , SARS-CoV-2/efectos de los fármacos , Anticuerpos Monoclonales/uso terapéutico , COVID-19/patología , COVID-19/prevención & control , Humanos , SARS-CoV-2/inmunología , Vacunación
14.
Transl Oncol ; 14(1): 100879, 2021 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-33045679

RESUMEN

The last decade has witnessed a substantial expansion in the field of microRNA (miRNA) biology, providing crucial insights into the role of miRNAs in disease pathology, predominantly in cancer progression and its metastatic spread. The discovery of tumor-suppressing miRNAs represents a potential approach for developing novel therapeutics. In this context, through miRNA microarray analysis, we examined the consequences of Prostate apoptosis response-4 (Par-4), a well-established tumor-suppressor, stimulation on expression of different miRNAs in Panc-1 cells. The results strikingly indicated elevated miR-200c levels in these cells upon Par-4 overexpression. Intriguingly, the Reverse Phase Protein Array (RPPA) analysis revealed differentially expressed proteins (DEPs), which overlap between miR200c- and Par-4-transfected cells, highlighting the cross-talks between these pathways. Notably, Phospho-p44/42 MAPK; Bim; Bcl-xL; Rb Phospho-Ser807, Ser811; Akt Phospho-Ser473; Smad1/5 Phospho-Ser463/Ser465 and Zyxin scored the most significant DEPs among the two data sets. Furthermore, the GFP-Par-4-transfected cells depicted an impeded expression of critical mesenchymal markers viz. TGF-ß1, TGF-ß2, ZEB-1, and Twist-1, concomitant with augmented miR-200c and E-cadherin levels. Strikingly, while Par-4 overexpression halted ZEB-1 at the transcriptional level; contrarily, silencing of endogenous Par-4 by siRNA robustly augmented the Epithelial-mesenchymal transition (EMT) markers, along with declining miR-200c levels. The pharmacological Par-4-inducer, NGD16, triggered Par-4 expression which corresponded with increased miR-200c resulting in the ZEB-1 downregulation. Noteworthily, tumor samples obtained from the syngenic mouse pancreatic cancer model revealed elevated miR-200c levels in the NGD16-treated mice that positively correlated with the Par-4 and E-cadherin levels in vivo; while a negative correlation was evident with ZEB-1 and Vimentin.

15.
J Vis Exp ; (160)2020 06 26.
Artículo en Inglés | MEDLINE | ID: mdl-32658204

RESUMEN

Current strategies in DNA and RNA nanotechnology enable the self-assembly of a variety of nucleic acid nanostructures in aqueous or substantially hydrated media. In this article, we describe detailed protocols that enable the construction of nanofiber architectures in organic solvent mixtures through the self-assembly of uniquely addressable, single-stranded, gamma-modified peptide nucleic acid (γPNA) tiles. Each single-stranded tile (SST) is a 12-base γPNA oligomer composed of two concatenated modular domains of 6 bases each. Each domain can bind to a mutually complimentary domain present on neighboring strands using programmed complementarity to form nanofibers that can grow to microns in length. The SST motif is made of 9 total oligomers to enable the formation of 3-helix nanofibers. In contrast with analogous DNA nanostructures, which form diameter-monodisperse structures, these γPNA systems form nanofibers that bundle along their widths during self-assembly in organic solvent mixtures. Self-assembly protocols described here therefore also include a conventional surfactant, Sodium Dodecyl Sulfate (SDS), to reduce bundling effects.


Asunto(s)
Nanoestructuras/química , Nanotecnología/métodos , Ácidos Nucleicos de Péptidos/metabolismo , Conformación de Ácido Nucleico
16.
Nat Commun ; 11(1): 2960, 2020 06 11.
Artículo en Inglés | MEDLINE | ID: mdl-32528008

RESUMEN

Nucleic acid-based materials enable sub-nanometer precision in self-assembly for fields including biophysics, diagnostics, therapeutics, photonics, and nanofabrication. However, structural DNA nanotechnology has been limited to substantially hydrated media. Transfer to organic solvents commonly used in polymer and peptide synthesis results in the alteration of DNA helical structure or reduced thermal stabilities. Here we demonstrate that gamma-modified peptide nucleic acids (γPNA) can be used to enable formation of complex, self-assembling nanostructures in select polar aprotic organic solvent mixtures. However, unlike the diameter-monodisperse populations of nanofibers formed using analogous DNA approaches, γPNA structures appear to form bundles of nanofibers. A tight distribution of the nanofiber diameters could, however, be achieved in the presence of the surfactant SDS during self-assembly. We further demonstrate nanostructure morphology can be tuned by means of solvent solution and by strand substitution with DNA and unmodified PNA. This work thereby introduces a science of γPNA nanotechnology.


Asunto(s)
Ácidos Nucleicos de Péptidos/química , ADN/química , Nanoestructuras/química , Nanotecnología/métodos , Dodecil Sulfato de Sodio/química , Solventes/química
17.
Cells ; 9(2)2020 02 03.
Artículo en Inglés | MEDLINE | ID: mdl-32028682

RESUMEN

In humans, (A549) cells impaired H9N2 virus nuclear export of the ribonucleoprotein (RNP) complex contrasted with the early and efficient nuclear export of the H1N1/WSN and pH1N1 virus RNP complexes. Although nuclear export of the RNP complex occurred via the nuclear pore complex, H9N2 virus infection also induced modifications in the nuclear envelope and induced cell cytotoxicity. Reduced PA protein levels in H9N2 virus-infected A549 cells occurred, and this phenomenon was independent of virus infection. Silencing the H1N1/WSN PA protein expression leads to impaired nuclear export of RNP complexes, suggesting that the impaired nuclear export of the H9N2 virus RNP complex may be one of the consequences of reduced PA protein levels. Early and efficient export of the RNP complex occurred in H9N2 virus-infected avian (CEF) cells, although structural changes in the nuclear envelope also occurred. Collectively our data suggest that a combination of delayed nuclear export and virus-induced cell cytotoxicity restricts H9N2 virus transmission in A549 cells. However, the early and efficient export of the RNP complex mitigated the effects of virus-induced cytotoxicity on H9N2 virus transmission in CEF cells. Our findings highlight the multi-factorial nature of host-adaptation of the polymerase proteins of avian influenza viruses in non-avian cell environments.


Asunto(s)
Núcleo Celular/metabolismo , Patos/virología , Subtipo H9N2 del Virus de la Influenza A/fisiología , Pulmón/patología , Pulmón/virología , Ribonucleoproteínas/metabolismo , Transporte Activo de Núcleo Celular , Animales , Muerte Celular , Línea Celular , Pollos , Humanos , Membrana Nuclear/metabolismo , Poro Nuclear/metabolismo , Proteínas Virales/metabolismo , Replicación Viral
18.
RSC Adv ; 9(70): 41368-41382, 2019 Dec 09.
Artículo en Inglés | MEDLINE | ID: mdl-35540070

RESUMEN

BiVO4 is a promising photoanode material for the photoelectrochemical (PEC) oxidation of water; however, its poor charge transfer, transport, and slow surface catalytic activity limit the expected theoretical efficiency. Herein, we have investigated the effect of Mo doping on SnO2 buffer layer coated BiVO4 for PEC water splitting. SnO2 and Mo doped BiVO4 layers are coated with layer by layer deposition through a precursor solution based spin coating technique followed by annealing. At 5% doping of Mo, the sample (SBM5) shows a maximum current density of 1.65 mA cm-2 at 1.64 V vs. RHEl in 0.1 M phosphate buffer solution under AM 1.5 G solar simulator, which is about 154% improvement over the sample without Mo (SBM0). The significant improvement in the photocurrent upon Mo doping is due to the improvement of various bulk and interfacial properties in the materials as measured by UV-vis spectroscopy, electrochemical impedance spectroscopy (EIS), Mott-Schottky analysis, and open-circuit photovoltage (OCPV). The charge transfer kinetics at the BiVO4/electrolyte interface are investigated to simulate the oxygen evolution process in photoelectrochemical water oxidation in the feedback mode of scanning electrochemical microscopy (SECM) using 2 mM [Fe(CN)6]3- as the redox couple. SECM investigation reveals a significant improvement in effective hole transfer rate constant from 2.18 cm s-1 to 7.56 cm s-1 for the hole transfer reaction from the valence band of BiVO4 to [Fe(CN)6]4- to oxidize into [Fe(CN)6]3- with the Mo doping in BiVO4. Results suggest that Mo6+ doping facilitates the hole transfer and suppresses the back reaction. The synergistic effect of fast forward and backward conversion of Mo6+ to Mo5+ expected to facilitate the V5+ to V4+ which has an important step to improve the photocurrent.

19.
Mater Sci Eng C Mater Biol Appl ; 103: 109788, 2019 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-31349446

RESUMEN

Electrochemical properties of dopamine, uric acid and ascorbic acid have been investigated using gold nano particles (AuNPs) decorated functionalized multiwall carbon nanotubes (MWCNTs) nano composite modified electrode. MWCNTs were acid functionalized to introduce -COOH functionalities. The functionalized MWCNTs were used as support materials and were decorated with gold nano particles of 20 nm in size. The nano composite materials thus prepared have been named as f-MWCNTs/AuNPs composite. The composite material was characterized using FTIR, RAMAN, TEM, UV-VIS spectroscopy and atomic force microscopy measurements. Electrochemical investigations on the composite modified glassy carbon electrode for dopamine was investigated in presence of interfering agents like ascorbic acid and uric acid. The modified electrode showed sensitivity of 0.002 µAnM-1 for dopamine with the detection limit of 35 nM. Present electrode showed high selectivity for dopamine as the oxidation peak of dopamine and uric acid were very well resolved. The analytical method was found to be suitable for the simultaneous determination of dopamine and uric acid using the modified electrode. Method was applied in spiked real serum sample for the determination of dopamine.


Asunto(s)
Dopamina/análisis , Técnicas Electroquímicas/métodos , Oro/química , Nanotubos de Carbono/química , Ácido Ascórbico/química , Catálisis , Dopamina/sangre , Electrodos , Humanos , Límite de Detección , Nanopartículas del Metal/química , Oxidación-Reducción , Ácido Úrico/química
20.
PLoS One ; 14(3): e0213911, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30921340

RESUMEN

Effective vaccine design relies on accurate knowledge of protection against a pathogen, so as to be able to induce relevant and effective protective responses against it. An ideal Human Immunodeficiency virus (HIV) vaccine should induce humoral as well as cellular immune responses to prevent initial infection of host cells or limit early events of viral dissemination. A Phase I HIV-1 prophylactic vaccine trial sponsored by the International AIDS Vaccine Initiative (IAVI) was conducted in India in 2009.The trial tested a HIV-1 subtype C vaccine in a prime-boost regimen, comprising of a DNA prime (ADVAX) and Modified Vaccine Ankara (MVA) (TBC-M4) boost. The trial reported that the vaccine regimen was safe, well tolerated, and resulted in enhancement of HIV-specific immune responses. However, preliminary immunological studies were limited to vaccine-induced IFN-γ responses against the Env and Gag peptides. The present study is a retrospective study to characterize in detail the nature of the vaccine-induced cell mediated immune responses among volunteers, using Peripheral Blood Mononuclear Cells (PBMC) that were archived during the trial. ELISpot was used to measure IFN-γ responses and polyfunctional T cells were analyzed by intracellular multicolor flow cytometry. It was observed that DNA priming and MVA boosting induced Env and Gag specific bi-functional and multi-functional CD4+ and CD8+ T cells expressing IFN-γ, TNF-α and IL-2. The heterologous prime-boost regimen appeared to be slightly superior to the homologous prime-boost regimen in inducing favorable cell mediated immune responses. These results suggest that an in-depth analysis of vaccine-induced cellular immune response can aid in the identification of correlates of an effective immunogenic response, and inform future design of HIV vaccines.


Asunto(s)
Vacunas contra el SIDA/administración & dosificación , VIH-1 , Linfocitos T/inmunología , Vacunas contra el SIDA/inmunología , Femenino , Infecciones por VIH/inmunología , Infecciones por VIH/prevención & control , VIH-1/inmunología , Voluntarios Sanos , Humanos , Inmunidad Celular , Inmunización Secundaria , India , Interferón gamma/metabolismo , Interleucina-2/metabolismo , Masculino , Factor de Necrosis Tumoral alfa/metabolismo , Vacunas de ADN/administración & dosificación , Vacunas Virales/administración & dosificación
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