Comparative Analysis of the Complete Mitochondrial Genomes of Three Sisoridae (Osteichthyes, Siluriformes) and the Phylogenetic Relationships of Sisoridae.

The family Sisoridae is one of the largest and most diverse Asiatic catfish families, with most species occurring in the water systems of the Qinhai-Tibetan Plateau and East Himalayas. At present, the phylogenetic relationship of the Sisoridae is relatively chaotic. In this study, the mitochondrial genomes (mitogenomes) of three species Creteuchiloglanis kamengensis, Glaridoglanis andersonii, and Exostoma sp. were systematically investigated, the phylogenetic relationships of the family were reconstructed and to determine the phylogenetic position of Exostoma sp. within Sisoridae. The lengths of the mitogenomes' sequences of C. kamengensis, G. andersonii, and Exostoma sp. were 16,589 bp, 16,531 bp, and 16,529 bp, respectively. They all contained one identical control region (D-loop), two ribosomal RNAs (rRNAs), 13 protein-coding genes (PCGs) and 22 transfer RNA (tRNA) genes. We applied two approaches, Bayesian Inference (BI) and Maximum Likelihood (ML), to construct phylogenetic trees. Our findings revealed that the topological structure of both ML and BI trees exhibited significant congruence. Specifically, the phylogenetic tree strongly supports the monophyly of Sisorinae and Glyptosternoids and provides new molecular biological data to support the reconstruction of phylogenetic relationships with Sisoridae. This study is of great scientific value for phylogenetic and genetic variation studies of the Sisoridae.

Chromosome-level genome assembly and population genomic analysis reveal evolution and local adaptation in common hairfin anchovy (Setipinna tenuifilis).

Understanding the genetic structure and the factors associated with adaptive diversity has significant implications for the effective management of wild populations under threat from overfishing and climate change. The common hairfin anchovy (Setipinna tenuifilis) is an economically and ecologically important pelagic fish species, spanning a broad latitudinal gradient along marginal seas of the Northwest Pacific. In this study, we constructed the first reference genome of S. tenuifilis using PacBio long reads and high-resolution chromosome conformation capture (Hi-C) technology. The assembled genome was 798.38 Mb with a contig N50 of 1.43 Mb and a scaffold N50 of 32.42 Mb, which were anchored onto 24 pseudochromosomes. A total of 22,019 genes were functionally annotated, which accounted for 95.27% of the predicted protein-coding genes. Chromosomal collinearity analysis revealed chromosome fusion or fission events in Clupeiformes species. Three genetic groups of S. tenuifilis were revealed along the Chinese coast using restriction site-associated DNA sequencing (RADseq). We investigated the influence of four bioclimatic variables as potential drivers of adaptive divergence in S. tenuifilis, suggesting that these environmental variables, especially sea surface temperature, may play important roles as drivers of spatially varying selection for S. tenuifilis. We also identified candidate functional genes underlying adaptive mechanisms and ecological tradeoffs using redundancy analysis (RDA) and BayeScan analysis. In summary, this study sheds light on the evolution and spatial patterns of genetic variation of S. tenuifilis, providing a valuable genomic resource for further biological and genetic studies on this species and other closely related Clupeiformes.

Thalidomide promotes NLRP3/caspase-1-mediated pyroptosis of macrophages in Talaromyces marneffei infection.

Macrophage-derived inflammatory cytokines are critical for host defense against Talaromyces marneffei (T. marneffei) infection among HIV/AIDS patients, and excessive inflammatory cytokines are associated with poor outcomes of AIDS-associated talaromycosis. However, the underlying mechanisms of macrophage-caused pyroptosis and cytokine storm are poorly understood. Here, in the T. marneffei-infected mice and macrophages, we show that T. marneffei induced pyroptosis in macrophages through the NLRP3/caspase-1 pathway. The immunomodulatory drug thalidomide could promote the pyroptosis of macrophages infected T. marneffei. In T. marneffei-infected mice, the splenic macrophages underwent increasing pyroptosis as talaromycosis deteriorated. Thalidomide ameliorated inflammation of mice, while amphotericin B (AmB) in combination with thalidomide did not improve overall survival compared with AmB alone. Taken together, our findings suggest that thalidomide promotes NLRP3/caspase-1-mediated pyroptosis of macrophages in T. marneffei infection.

Control of the injection velocity of embolic agents in embolization treatment.

BACKGROUND: Embolization is a common treatment method for tumor-targeting, anti-organ hyper-function, and hemostasis. However, the injection of embolic agents largely depends on the experiences of doctors, and doctors need to work in an X-ray environment that hurts their health. Even for a well-trained doctor, complications such as ectopic embolism caused by excessive embolic agents are always inevitable. RESULTS: This paper established a flow control curve model for embolic injection based on local arterial pressure. The end-vessel network was simplified as a porous media. The hemodynamic changes at different injection velocities and embolization degrees were simulated and analyzed. Sponge, a typical porous medium, was used to simulate the blocking and accumulation of embolic agents by capillary networks in the in vitro experimental platform. CONCLUSIONS: The simulation and experimental results show that the local arterial pressure is closely related to the critical injection velocity of the embolic agent reflux at a certain degree of embolization. The feasibility of this method for an automatic embolic injection system is discussed. It is concluded that the model of the flow control curve of embolic injection can effectively reduce the risk of ectopic embolism and shorten the time of embolic injection. The clinical application of this model is of great value in reducing radiation exposure and improving the success rate of interventional embolization.

A Reliable Murine Model of Disseminated Infection Induced by Talaromyces Marneffei.

Talaromycosis (penicilliosis) caused by Talaromyces marneffei is one of the most important opportunistic infection diseases in tropical countries of South and Southeast Asia. Most infections occurred in individuals with human immunodeficiency virus (HIV) and the primarily reason for the increase in the number of the cases is HIV pandemic. The pathogenesis of T. marneffei infection is unclear. There is still no ideal animal model for studying talaromycosis. In this study, we developed a stable, safe and maneuverable murine model that mimics human T. marneffei disseminated infection using T. marneffei yeast intraperitoneal injected to BALB/c nude mice. We successfully observed symptoms similar to those seen in clinical patients in this murine model, including skin lesions, hepatosplenomegaly, pulmonary infection and mesenteric lesions. We further studied the pathological changes of various tissues and organs in the infected animals to help better understand the severity of the infection. This model may provide a good tool for studying disseminated infection induced by T. marneffei.

[Research on injection flow velocity planning method for embolic agent injection system].

Interventional embolization therapy is widely used for procedures such as targeted tumour therapy, anti-organ hyperactivity and haemostasis. During embolic agent injection, doctors need to work under X-ray irradiation environment. Moreover, embolic agent injection is largely dependent on doctors' experience and feelings, and over-injection of embolic agent can lead to reflux, causing ectopic embolism and serious complications. As an effective way to reduce radiation exposure and improve the success rate of interventional embolization therapy, embolic agent injection robot is highly anticipated, but how to decide the injection flow velocity of embolic agent is a problem that remains to be solved. On the basis of fluid dynamics simulation and experiment, we established an arterial pressure-injection flow velocity boundary curve model that can avoid reflux, which provides a design basis for the control of embolic agent injection system. An in vitro experimental platform for injection system was built and validation experiments were conducted. The results showed that the embolic agent injection flow speed curve designed under the guidance of the critical flow speed curve model of reflux could effectively avoid the embolic agent reflux and shorten the embolic agent injection time. Exceeding the flow speed limit of the model would lead to the risk of embolization of normal blood vessels. This paper confirms the validity of designing the embolic agent injection flow speed based on the critical flow speed curve model of reflux, which can achieve rapid injection of embolic agent while avoiding reflux, and provide a basis for the design of the embolic agent injection robot.

[An Integrated Digital Magnetic Resonance Imaging Spectrometer].

An integrated digital magnetic resonance imaging spectrometer was proposed in this study. By using the FPGA chip Artix7 200T, timing control, data processing, digital frequency conversion and phase control were implemented into a single-chip, thus effectively improved timing accuracy and phase accuracy, while avoided the structural design complexity caused by multi-board connection and improved system integration and imaging quality.

Study on traceability and suppression method of medium-frequency error for ultra-precision machining optical crystals.

The medium-frequency error on the surface of ultraprecision flycutting has an important effect on the performance of the optical crystal. In this paper, firstly, the characteristic phenomenon of "knife-like grain" in the medium frequency surface of the square and circular optical crystal machined by ultraprecision fly-cutting is revealed. Besides, the error traceability is realized and the results show that the periodic low-frequency fluctuation of 0.3 Hz between the tool tip and the workpiece is the cause of the medium frequency error of "knife-like grain". Secondly, through the frequency domain waterfall diagram of vibration signal and the analysis of spindle speed signal, it is proved that the surface shape characteristic is caused by the fluctuation of spindle speed during the cutting process. Then, the variation rule of the cutting amount caused by the fluctuation of spindle speed is explored theoretically and experimentally, and the formation mechanism of medium frequency error in flycutting is revealed. Finally, in order to reduce the medium frequency error of "knife-like grain", the control parameters of the aerostatic spindle are reasonably optimized based on the analysis of the mechanical and electrical coupling control performance of the spindle, so that the RMS values in the medium frequency band of the workpiece are greatly improved after machining.

Efficiency enhancement of quantum dot-phosphor hybrid white-light-emitting diodes using a centrifugation-based quasi-horizontal separation structure.

In this paper, a centrifugation-based quasi-horizontal separation (c-HS) structure is proposed to enhance the QD light extraction of QD-phosphor hybrid white LEDs (WLEDs), effectively suppressing the backscattered loss from phosphor at the top region of the QD layer. Results indicate that a large centrifugation speed and dispensing mass of the QD layer is more beneficial to reducing the local density of phosphor at the top region, realizing quasi-horizontal separation between phosphor and QDs. Moreover, WLEDs with c-HS structure and conventional vertically layered packaging reference structure were compared at different correlated color temperatures (CCT). The radiant power and luminous flux achieved by the c-HS structure were 13.6% and 10.8%, respectively, higher than the reference structure at a typical warm white color of ∼4000 K. Consequently, this study can provide a new perspective on designing the separation structure for QD-phosphor hybrid WLEDs considering the backscattering loss of QD light.

Numerical study on the scattering property of porous polymer structures via supercritical CO2 microcellular foaming.

Disordered porous polymer structures have gained tremendous attention due to their wide applications in various fields. As a simple yet versatile technique, supercritical CO2 microcellular foaming has been proposed to fabricate highly scattering porous polymer films, which have been used to enhance the efficiency of quantum dots (QDs) films. In the foaming process, numerous enclosed pores are generated, which induce significant scattering, underpinning the efficiency enhancement in optoelectronic devices. However, the scattering property of foamed porous structures has still not been well investigated, and effective guidelines for engineering the porous structures are still not available. In this work, we use Mie scattering theory and ray-tracing simulation to analyze the optical property of a single pore, pore assembly, and porous film. Furthermore, it is demonstrated that the scattering scheme in the porous QD films leads to a large enhancement of excitation light absorption and QD emission extraction. It is envisioned that our work will contribute to the engineering guidelines of porous structures and boost the application of porous structures in similar fields.

Cysteine/Penicillamine Ligation Independent of Terminal Steric Demands for Chemical Protein Synthesis.

The chemical ligation of two unprotected peptides to generate a natural peptidic linkage specifically at the C- and N-termini is a desirable goal in chemical protein synthesis but is challenging because it demands high reactivity and selectivity (chemo-, regio-, and stereoselectivity). We report an operationally simple and highly effective chemical peptide ligation involving the ligation of peptides with C-terminal salicylaldehyde esters to peptides with N-terminal cysteine/penicillamine. The notable features of this method include its tolerance of steric hinderance from the side groups on either ligating terminus, thereby allowing flexible disconnection at sites that are otherwise difficult to functionalize. In addition, this method can be expanded to selective desulfurization and one-pot ligation-desulfurization reactions. The effectiveness of this method was demonstrated by the synthesis of VISTA (216-311), PD-1 (192-288) and Eglin C.

Investigation of stability and optical performance of quantum-dot-based LEDs with methyl-terminated-PDMS-based liquid-type packaging structure.

Although quantum dots (QDs) have a high quantum yield close to one in a solution, they exhibit low conversion efficiency in a solidification polymer matrix, which hampers the development of QD-based light-emitting diodes (LEDs) with high stability and optical performance. In this study, we proposed a methyl-terminated-polydimethylsiloxane-(PDMS)-based liquid-type packaging structure (LPS) to improve stability and optical performance of QD-based LEDs. Compared with the traditional ethylene-terminated-PDMS-based solid-type packaging structure, the LPS with an optimized kinematic viscosity of 10000 m2/s can provide higher stability and optical performances for QD-based LEDs, including total radiant power and luminous flux. Consequently, the proposed effective and simple strategy has great potential for illumination and display applications.

Improving the optical performance of multi-chip LEDs by using patterned phosphor configurations.

In order to improve the color uniformity of multi-chip LEDs, a patterned phosphor configuration has been proposed by using pulsing spray process. The patterned phosphor has detached yellow and red phosphor regions matching every single LED chip. Optical performances of different phosphor parameters are experimentally investigated. The results show that the yellow central coating (YCC) configuration produces outstanding performance not only in chromatic uniformity but also in luminous. In comparison with the conventional phosphor coating, the YCC patterned phosphor LED can improve the luminous flux by 20.6%, and decrease the difference of the correlated color temperature (CCT) distribution from 1362K to 489K. We believe that the patterned phosphor configuration can be used for improving optical properties of multi-chip LEDs.

Enhancement of luminous efficacy for LED lamps by introducing polyacrylonitrile electrospinning nanofiber film.

Polyacrylonitrile electrospinning nanofiber film was introduced into a light emitting diode (LED) lamp to exploit the strong reflective and scattering effects. The light extraction mechanism was studied systematically for three different electrospinning types in three different types of LED lamps. For the all-electrospinning types, the luminous efficacy increased for the white LED, outwards remote phosphor layer, and inwards remote phosphor layer lamps by 10.98, 16.97, and 18.35%, respectively, compared with the reference lamp. Lamps with stronger backscatter had larger luminous efficacy enhancements. The reflector-electrospinning type helped redirect lights with large emission angles. The substrate-electrospinning type was beneficial for recycling the total interior reflection lights and increasing the yellow to blue ratio. Additionally, the all-electrospinning white LED lamps remains 97.89% luminous flux after a 96-hour aging process. Electrospinning fiber films are favorable luminous efficacy enhancers for the future generation of LED lamps.

Effect of flip-chip height on the optical performance of conformal white-light-emitting diodes.

To improve the optical performance of the conformal white light-emitting diodes (LEDs), previous studies mainly focus on the phosphor structures design by simulations and experiments methods. However, one of the most critical parameters, i.e., the height of chips, is barely studied. In this study, we have experimentally investigated the effect of the flip-chip height on the optical performance of conformal white LEDs. The results show that larger chip height can cause lower radiant power and luminous flux, while wider viewing angles can be achieved. By selecting a suitable chip height of 200 µm, superior color uniformity for white LEDs can be obtained with only 168 K correlated color temperature (ΔCCT). This study can provide a new perspective to improve the color uniformity without changing the phosphor structures or using special scattering elements; moreover, it can facilitate the selection of a proper chip height, considering different illumination requirements. Further investigations on the chip height considering packaging structures are still necessary to improve the luminous flux and the color uniformity simultaneously.

High-level expression, purification, and enzymatic characterization of a recombinant Aspergillus sojae alkaline protease in Pichia pastoris.

An alkaline protease (Ap) was cloned from Aspergillus sojae GIM3.33 via RT-PCR technique. A truncated Ap without the signal peptide was successfully expressed in the Pichia pastoris KM71 strain. The following describes the optimal process conditions for the recombinant engineering of a strain expressing a recombinant Ap (rAp) in a triangular flask: inoculum concentration OD600 value 20.0 in 40 mL working volume (in 500 mL flasks), methanol addition (1.0%; volume ratio), 0.02% biotin solution (60 µL), and YNB primary concentration (13.0 g/L). Under these conditions, the protease activity of rAp in the fermentation broth reached 400.4 ±â€¯40.5 U/mL after induction for three days. The rAp was isolated and purified, and its enzymatic characteristics were tested. Its optimal pH was 10.0, and it remained stable in a pH range of 7.0-10.0. Its optimal temperature was 45 °C and it retained >50% activity at 40 °C for 60 min. The rAp activity was significantly inhibited by PMSF, Zn2+ and Fe2+ and the rAp had a broad substrate specificity for natural proteins and synthetic peptide substrates, and preferred substrates at P1 position with large hydrophobic side-chain groups. Compared to Papain (8.7%) and Alcalase (12.2%), the degree of hydrolysis of rAp to soy protein isolate was 16.5%; therefore, rAp was a good candidate for the processing of food industry byproducts.

Full spectral optical modeling of quantum-dot-converted elements for light-emitting diodes considering reabsorption and reemission effect.

Quantum dots (QDs) have attracted significant attention in light-emitting diode (LED) illumination and display applications, owing to their high quantum yield and unique spectral properties. However, an effective optical model of quantum-dot-converted elements (QDCEs) for (LEDs) that entirely considers the reabsorption and reemission effect is lacking. This suppresses the design of QDCE structures and further investigation of light-extraction/conversion mechanisms in QDCEs. In this paper, we proposed a full spectral optical modeling method for QDCEs packaged in LEDs, entirely considering the reabsorption and reemission effect, and its results are compared with traditional models without reabsorption or reemission. The comparisons indicate that the QDCE absorption loss of QD emission light is a major factor decreasing the radiant efficacy of LEDs, which should be considered when designing QDCE structures. According to the measurements of fabricated LEDs, only calculation results that entirely consider reabsorption and reemission show good agreement with experimental radiant efficacy, spectra, and peak wavelength at the same down-conversion efficiency. Consequently, it is highly expected that QDCE will be modeled considering the reabsorption and reemission events. This study provides a simple and effective modeling method for QDCEs, which shows great potential for their structure designs and fundamental investigations.

Effect of ZnO nanostructures on the optical properties of white light-emitting diodes.

White light produced by blue LEDs with yellow phosphor is the most widely used methods, but it results in poor quality in angular CCT uniformity. In this work, a novel technique was introduced to solve this problem by integrating different ZnO nanostructures into white light-emitting diodes. The experiment of ZnO doped films and the simulation of Finite-Difference Time-Domain (FDTD) were carried out. The result indicated scattering effect of ZnO nanoparticles could improve uniformity of scattering energy effectively. Moreover, the effect of ZnO nanostructures on white light-emitting diodes (wLEDs) devices was also investigated. The CCT deviation of wLEDs devices would decrease from 3455.49 K to 96.30 K, 40.03 K and 60.09 K when the node-like (N-ZnO), sheet-like (S-ZnO) and rod-like ZnO (R-ZnO) respectively applied. The higher CCT uniformity and little luminous flux dropping were achieved when the optimal concentrations of N-ZnO, S-ZnO, and R-ZnO nanostructures were 0.25%, 0.75%, and 0.25%. This low-cost and green manufacturing method has a great impact on development of white light-emitting diodes.

A prospective and randomised trial comparing fluoroscopic, total ultrasonographic, and combined guidance for renal access in mini-percutaneous nephrolithotomy.

OBJECTIVE: To compare the safety and efficacy of fluoroscopic guidance (FG), total ultrasonographic guidance (USG), and combined ultrasonographic and fluoroscopic guidance (CG) for percutaneous renal access in mini-percutaneous nephrolithotomy (mini-PCNL). PATIENTS AND METHODS: The present study was conducted between July 2014 and May 2015 as a prospective randomised trial at the First Affiliated Hospital of Guangzhou Medical University. In all, 450 consecutive patients with renal stones of >2 cm were randomised to undergo FG, USG, or CG mini-PCNL (150 patients for each group). The primary endpoints were the stone-free rate (SFR) and blood loss (haemoglobin decrease during the operation and transfusion rate). Secondary endpoints included access failure rate, operating time, and complications. S.T.O.N.E. score was used to document the complexity of the renal stones. The study was registered at http://clinicaltrials.gov/ (NCT02266381). RESULTS: The three groups had similar baseline characteristics. With S.T.O.N.E. scores of 5-6 or 9-13, the SFRs were comparable between the three groups. For S.T.O.N.E. scores of 7-8, FG and CG achieved significantly better SFRs than USG (one-session SFR 85.1% vs 88.5% vs 66.7%, P = 0.006; overall SFR at 3 months postoperatively 89.4% vs 90.2% vs 69.8%, P = 0.002). Multiple-tracts mini-PCNL was used more frequently in the FG and CG groups than in the USG group (20.7% vs 17.1% vs 9.5%, P = 0.028). The mean total radiation exposure time was significantly greater for FG than for CG (47.5 vs 17.9 s, P < 0.001). The USG had zero radiation exposure. There was no significant difference in the haemoglobin decrease, transfusion rate, access failure rate, operating time, nephrostomy drainage time, and hospital stay among the groups. The overall operative complication rates using the Clavien-Dindo grading system were similar between the groups. CONCLUSIONS: Mini-PCNL under USG is as safe and effective as FG or CG in the treatment of simple kidney stones (S.T.O.N.E. scores 5-6) but with no radiation exposure. FG or CG is more effective for patients with S.T.O.N.E. scores of 7-8, where multiple percutaneous tracts may be necessary.

Color uniformity enhancement for COB WLEDs using a remote phosphor film with two freeform surfaces.

The color uniformity (CU) of chip-on-board (COB) white light emitting diodes (WLEDs) has been improved by using remote phosphor films with two freeform surfaces (TFS-RPFs). The finite-difference time-domain (FDTD), Monte Carlo ray-tracing, and color-thickness feedback (CTFB) methods were used to design the TFS-RPFs: the blue light distribution of COB WLEDs is greatly affected by the angular thickness distribution of TFS-RPFs, and a high CU can be achieved iteratively. The directional inconsistency of incident and emergent blue light, scattering effect of TFS-RPFs, and illumination characteristics of the COB source were also investigated. COB WLEDs containing optimized TFS-RPFs achieved high CU with a decrease of 26.2% in maximum CCT deviation; thus, TFS-RPFs can improve the CU of COB WLEDs.