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1.
Cell ; 162(2): 314-327, 2015 Jul 16.
Artículo en Inglés | MEDLINE | ID: mdl-26144317

RESUMEN

The large (L) proteins of non-segmented, negative-strand RNA viruses, a group that includes Ebola and rabies viruses, catalyze RNA-dependent RNA polymerization with viral ribonucleoprotein as template, a non-canonical sequence of capping and methylation reactions, and polyadenylation of viral messages. We have determined by electron cryomicroscopy the structure of the vesicular stomatitis virus (VSV) L protein. The density map, at a resolution of 3.8 Å, has led to an atomic model for nearly all of the 2109-residue polypeptide chain, which comprises three enzymatic domains (RNA-dependent RNA polymerase [RdRp], polyribonucleotidyl transferase [PRNTase], and methyltransferase) and two structural domains. The RdRp resembles the corresponding enzymatic regions of dsRNA virus polymerases and influenza virus polymerase. A loop from the PRNTase (capping) domain projects into the catalytic site of the RdRp, where it appears to have the role of a priming loop and to couple product elongation to large-scale conformational changes in L.


Asunto(s)
ARN Polimerasas Dirigidas por ADN/química , ARN Polimerasas Dirigidas por ADN/ultraestructura , Virus de la Estomatitis Vesicular Indiana/química , Proteínas Virales/química , Proteínas Virales/ultraestructura , Microscopía por Crioelectrón , Modelos Moleculares , Estructura Terciaria de Proteína , Homología de Secuencia de Aminoácido , Transcripción Genética
2.
J Virol ; 94(13)2020 06 16.
Artículo en Inglés | MEDLINE | ID: mdl-32321813

RESUMEN

Nonsegmented negative-strand (NNS) RNA viruses possess a ribonucleoprotein template in which the genomic RNA is sequestered within a homopolymer of nucleocapsid protein (N). The viral RNA-dependent RNA polymerase (RdRP) resides within an approximately 250-kDa large protein (L), along with unconventional mRNA capping enzymes: a GDP:polyribonucleotidyltransferase (PRNT) and a dual-specificity mRNA cap methylase (MT). To gain access to the N-RNA template and orchestrate the LRdRP, LPRNT, and LMT, an oligomeric phosphoprotein (P) is required. Vesicular stomatitis virus (VSV) P is dimeric with an oligomerization domain (OD) separating two largely disordered regions followed by a globular C-terminal domain that binds the template. P is also responsible for bringing new N protomers onto the nascent RNA during genome replication. We show VSV P lacking the OD (PΔOD) is monomeric but is indistinguishable from wild-type P in supporting mRNA transcription in vitro Recombinant virus VSV-PΔOD exhibits a pronounced kinetic delay in progeny virus production. Fluorescence recovery after photobleaching demonstrates that PΔOD diffuses 6-fold more rapidly than the wild type within viral replication compartments. A well-characterized defective interfering particle of VSV (DI-T) that is only competent for RNA replication requires significantly higher levels of N to drive RNA replication in the presence of PΔOD We conclude P oligomerization is not required for mRNA synthesis but enhances genome replication by facilitating RNA encapsidation.IMPORTANCE All NNS RNA viruses, including the human pathogens rabies, measles, respiratory syncytial virus, Nipah, and Ebola, possess an essential L-protein cofactor, required to access the N-RNA template and coordinate the various enzymatic activities of L. The polymerase cofactors share a similar modular organization of a soluble N-binding domain and a template-binding domain separated by a central oligomerization domain. Using a prototype of NNS RNA virus gene expression, vesicular stomatitis virus (VSV), we determined the importance of P oligomerization. We find that oligomerization of VSV P is not required for any step of viral mRNA synthesis but is required for efficient RNA replication. We present evidence that this likely occurs through the stage of loading soluble N onto the nascent RNA strand as it exits the polymerase during RNA replication. Interfering with the oligomerization of P may represent a general strategy to interfere with NNS RNA virus replication.


Asunto(s)
Fosfoproteínas/metabolismo , Vesiculovirus/genética , Replicación Viral/genética , Animales , Línea Celular , Chlorocebus aethiops , Humanos , Cinética , Proteínas de la Nucleocápside/genética , Proteínas de la Nucleocápside/metabolismo , Fosfoproteínas/genética , Unión Proteica , ARN Mensajero/metabolismo , ARN Viral/genética , ARN Polimerasa Dependiente del ARN/genética , ARN Polimerasa Dependiente del ARN/metabolismo , Ribonucleoproteínas/metabolismo , Transcripción Genética/genética , Células Vero , Estomatitis Vesicular/virología , Proteínas Virales/genética , Proteínas Virales/metabolismo
3.
EMBO Rep ; 18(6): 1027-1037, 2017 06.
Artículo en Inglés | MEDLINE | ID: mdl-28396572

RESUMEN

The transcription and replication machinery of negative-stranded RNA viruses presents a possible target for interference in the viral life cycle. We demonstrate the validity of this concept through the use of cytosolically expressed single-domain antibody fragments (VHHs) that protect cells from a lytic infection with vesicular stomatitis virus (VSV) by targeting the viral nucleoprotein N. We define the binding sites for two such VHHs, 1004 and 1307, by X-ray crystallography to better understand their inhibitory properties. We found that VHH 1307 competes with the polymerase cofactor P for binding and thus inhibits replication and mRNA transcription, while binding of VHH 1004 likely only affects genome replication. The functional relevance of these epitopes is confirmed by the isolation of escape mutants able to replicate in the presence of the inhibitory VHHs. The escape mutations allow identification of the binding site of a third VHH that presumably competes with P for binding at another site than 1307. Collectively, these binding sites uncover different features on the N protein surface that may be suitable for antiviral intervention.


Asunto(s)
Anticuerpos Antivirales/metabolismo , Proteínas de la Nucleocápside/química , Proteínas de la Nucleocápside/inmunología , Anticuerpos de Dominio Único/metabolismo , Virus de la Estomatitis Vesicular Indiana/fisiología , Replicación Viral , Células A549 , Animales , Anticuerpos Antivirales/química , Anticuerpos Antivirales/inmunología , Sitios de Unión , Cristalografía por Rayos X , Replicación del ADN , Humanos , Mutación , Proteínas de la Nucleocápside/metabolismo , ARN Viral , Anticuerpos de Dominio Único/química , Anticuerpos de Dominio Único/inmunología , Transcripción Genética , Virus de la Estomatitis Vesicular Indiana/efectos de los fármacos , Virus de la Estomatitis Vesicular Indiana/genética , Virus de la Estomatitis Vesicular Indiana/inmunología
4.
Proc Natl Acad Sci U S A ; 113(51): 14582-14588, 2016 12 20.
Artículo en Inglés | MEDLINE | ID: mdl-27965394

RESUMEN

The dynamics, control, and evolution of communicable and vector-borne diseases are intimately connected to the joint dynamics of epidemiological, behavioral, and mobility processes that operate across multiple spatial, temporal, and organizational scales. The identification of a theoretical explanatory framework that accounts for the pattern regularity exhibited by a large number of host-parasite systems, including those sustained by host-vector epidemiological dynamics, is but one of the challenges facing the coevolving fields of computational, evolutionary, and theoretical epidemiology. Host-parasite epidemiological patterns, including epidemic outbreaks and endemic recurrent dynamics, are characteristic to well-identified regions of the world; the result of processes and constraints such as strain competition, host and vector mobility, and population structure operating over multiple scales in response to recurrent disturbances (like El Niño) and climatological and environmental perturbations over thousands of years. It is therefore important to identify and quantify the processes responsible for observed epidemiological macroscopic patterns: the result of individual interactions in changing social and ecological landscapes. In this perspective, we touch on some of the issues calling for the identification of an encompassing theoretical explanatory framework by identifying some of the limitations of existing theory, in the context of particular epidemiological systems. Fostering the reenergizing of research that aims at disentangling the role of epidemiological and socioeconomic forces on disease dynamics, better understood as complex adaptive systems, is a key aim of this perspective.


Asunto(s)
Control de Enfermedades Transmisibles , Enfermedades Transmisibles/epidemiología , Brotes de Enfermedades , Animales , Clima , Enfermedades Transmisibles/economía , Vectores de Enfermedades , Ecología , Ambiente , Epidemias , Interacciones Huésped-Parásitos , Humanos , Modelos Organizacionales , Modelos Estadísticos , Tiempo , Virus Zika , Infección por el Virus Zika/prevención & control
5.
J Virol ; 91(1)2017 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-27795419

RESUMEN

We report an in vitro RNA synthesis assay for the RNA-dependent RNA polymerase (RdRP) of rabies virus (RABV). We expressed RABV large polymerase protein (L) in insect cells from a recombinant baculovirus vector and the phosphoprotein cofactor (P) in Escherichia coli and purified the resulting proteins by affinity and size exclusion chromatography. Using chemically synthesized short RNA corresponding to the first 19 nucleotides (nt) of the rabies virus genome, we demonstrate that L alone initiates synthesis on naked RNA and that P serves to enhance the initiation and processivity of the RdRP. The L-P complex lacks full processivity, which we interpret to reflect the lack of the viral nucleocapsid protein (N) on the template. Using this assay, we define the requirements in P for stimulation of RdRP activity as residues 11 to 50 of P and formally demonstrate that ribavirin triphosphate (RTP) inhibits the RdRP. By comparing the properties of RABV RdRP with those of the related rhabdovirus, vesicular stomatitis virus (VSV), we demonstrate that both polymerases can copy the heterologous promoter sequence. The requirements for engagement of the N-RNA template of VSV by its polymerase are provided by the C-terminal domain (CTD) of P. A chimeric RABV P protein in which the oligomerization domain (OD) and the CTD were replaced by those of VSV P stimulated RABV RdRP activity on naked RNA but was insufficient to permit initiation on the VSV N-RNA template. This result implies that interactions between L and the template N are also required for initiation of RNA synthesis, extending our knowledge of ribonucleoprotein interactions that are critical for gene expression. IMPORTANCE: The current understanding of the structural and functional significance of the components of the rabies virus replication machinery is incomplete. Although structures are available for the nucleocapsid protein in complex with RNA, and also for portions of P, information on both the structure and function of the L protein is lacking. This study reports the expression and purification of the full-length L protein of RABV and the characterization of its RdRP activity in vitro The study provides a new assay that has utility for screening inhibitors and understanding their mechanisms of action, as well as defining new interactions that are required for RdRP activity.


Asunto(s)
ARN Polimerasas Dirigidas por ADN/genética , Regulación Viral de la Expresión Génica , Fosfoproteínas/genética , ARN Viral/genética , Virus de la Rabia/genética , Ribonucleoproteínas/genética , Proteínas Virales/genética , Proteínas Estructurales Virales/genética , Baculoviridae/genética , Baculoviridae/metabolismo , Bioensayo , ARN Polimerasas Dirigidas por ADN/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Chaperonas Moleculares , Proteínas de la Nucleocápside/genética , Proteínas de la Nucleocápside/metabolismo , Nucleótidos/farmacología , Fosfoproteínas/metabolismo , Regiones Promotoras Genéticas , ARN Viral/metabolismo , ARN Polimerasa Dependiente del ARN , Virus de la Rabia/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Rhabdoviridae/genética , Rhabdoviridae/metabolismo , Ribonucleoproteínas/metabolismo , Vesiculovirus/genética , Vesiculovirus/metabolismo , Proteínas Virales/metabolismo , Proteínas Estructurales Virales/metabolismo
6.
EMBO J ; 31(5): 1320-9, 2012 Mar 07.
Artículo en Inglés | MEDLINE | ID: mdl-22246179

RESUMEN

The minimal RNA synthesis machinery of non-segmented negative-strand RNA viruses comprises a genomic RNA encased within a nucleocapsid protein (N-RNA), and associated with the RNA-dependent RNA polymerase (RdRP). The RdRP is contained within a viral large (L) protein, which associates with N-RNA through a phosphoprotein (P). Here, we define that vesicular stomatitis virus L initiates synthesis via a de-novo mechanism that does not require N or P, but depends on a high concentration of the first two nucleotides and specific template requirements. Purified L copies a template devoid of N, and P stimulates L initiation and processivity. Full processivity of the polymerase requires the template-associated N protein. This work provides new mechanistic insights into the workings of a minimal RNA synthesis machine shared by a broad group of important human, animal and plant pathogens, and defines a mechanism by which specific inhibitors of RNA synthesis function.


Asunto(s)
ARN Polimerasas Dirigidas por ADN/metabolismo , ARN Viral/metabolismo , Vesiculovirus/enzimología , Proteínas Virales/metabolismo , ARN Polimerasas Dirigidas por ADN/aislamiento & purificación , Modelos Biológicos , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo , Proteínas Virales/aislamiento & purificación
7.
J Biol Chem ; 289(14): 9961-9, 2014 Apr 04.
Artículo en Inglés | MEDLINE | ID: mdl-24526687

RESUMEN

The RNA synthesis machinery of non-segmented negative-sense RNA viruses comprises a ribonucleoprotein complex of the genomic RNA coated by a nucleocapsid protein (N) and associated with polymerase. Work with vesicular stomatitis virus (VSV), a prototype, supports a model of RNA synthesis whereby N is displaced from the template to allow the catalytic subunit of the polymerase, the large protein (L) to gain access to the RNA. Consistent with that model, purified L can copy synthetic RNA that contains requisite promoter sequences. Full processivity of L requires its phosphoprotein cofactor and the template-associated N. Here we demonstrate the importance of the 2' position of the RNA template and the substrate nucleotide triphosphates during initiation and elongation by L. The VSV polymerase can initiate on both DNA and RNA and can incorporate dNTPs. During elongation, the polymerase is sensitive to 2' modifications, although dNTPs can be incorporated, and mixed DNA-RNA templates can function. Modifications to the 2' position of the NTP, including 2',3'-ddCTP, arabinose-CTP, and 2'-O-methyl-CTP, inhibit polymerase, whereas 2'-amino-CTP is incorporated. The inhibitory effects of the NTPs were more pronounced on authentic N-RNA with the exception of dGTP, which is incorporated. This work underscores the sensitivity of the VSV polymerase to nucleotide modifications during initiation and elongation and highlights the importance of the 2'-hydroxyl of both template and substrate NTP. Moreover, this study demonstrates a critical role of the template-associated N protein in the architecture of the RNA-dependent RNA polymerase domain of L.


Asunto(s)
Citarabina/química , Regiones Promotoras Genéticas , ARN Viral/biosíntesis , ARN Polimerasa Dependiente del ARN/química , Elongación de la Transcripción Genética , Iniciación de la Transcripción Genética , Vesiculovirus/enzimología , Proteínas Virales/química , Zalcitabina/química , Animales , Antimetabolitos Antineoplásicos/química , Antimetabolitos Antineoplásicos/farmacología , Citarabina/farmacología , ARN Viral/química , ARN Viral/genética , ARN Polimerasa Dependiente del ARN/genética , ARN Polimerasa Dependiente del ARN/metabolismo , Células Sf9 , Spodoptera , Vesiculovirus/genética , Proteínas Virales/genética , Proteínas Virales/metabolismo , Zalcitabina/farmacología
8.
Bull Math Biol ; 77(2): 319-38, 2015 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-25033780

RESUMEN

Preserving a system's viability in the presence of diversity erosion is critical if the goal is to sustainably support biodiversity. Reduction in population heterogeneity, whether inter- or intraspecies, may increase population fragility, either decreasing its ability to adapt effectively to environmental changes or facilitating the survival and success of ordinarily rare phenotypes. The latter may result in over-representation of individuals who may participate in resource utilization patterns that can lead to over-exploitation, exhaustion, and, ultimately, collapse of both the resource and the population that depends on it. Here, we aim to identify regimes that can signal whether a consumer-resource system is capable of supporting viable degrees of heterogeneity. The framework used here is an expansion of a previously introduced consumer-resource type system of a population of individuals classified by their resource consumption. Application of the Reduction Theorem to the system enables us to evaluate the health of the system through tracking both the mean value of the parameter of resource (over)consumption, and the population variance, as both change over time. The article concludes with a discussion that highlights applicability of the proposed system to investigation of systems that are affected by particularly devastating overly adapted populations, namely cancerous cells. Potential intervention approaches for system management are discussed in the context of cancer therapies.


Asunto(s)
Conservación de los Recursos Naturales/métodos , Neoplasias , Animales , Biodiversidad , Interacciones Huésped-Parásitos , Humanos , Conceptos Matemáticos , Modelos Biológicos , Neoplasias/terapia , Biología de Sistemas
9.
Proc Natl Acad Sci U S A ; 109(36): 14628-33, 2012 Sep 04.
Artículo en Inglés | MEDLINE | ID: mdl-22908284

RESUMEN

The RNA-dependent RNA polymerase (RdRP) of nonsegmented negative-sense RNA viruses consists of a large catalytic protein (L) and a phosphoprotein cofactor (P). During infection, the RdRP replicates and transcribes the viral genome, which resides inside an oligomer of nucleocapsid protein (N-RNA). The classical view of P as a cofactor for L assigns a primary role of P as a bridge mediating the access of L to the RNA template, whereby its N-terminal domain (P(NTD)) binds L and its C-terminal domain (P(CTD)) binds N-RNA. Recent biochemical and structural studies of a prototype nonsegmented negative-sense RNA virus, vesicular stomatitis virus, suggest a role for P beyond that of a mere physical link: P induces a structural rearrangement in L and stimulates polymerase processivity. In this study, we investigated the critical requirements within P mediating the functional interaction with L to form a fully functional RdRP. We analyzed the correlation between the impact of P on the conformation of L and its activity in RNA synthesis and the consequences of these events on RdRP function. We identified three separable elements of the P(NTD) that are required for inducing the conformational rearrangement of L, stimulating polymerase processivity, and mediating transcription of the N-RNA. The functional interplay between these elements provides insight into the role of P as a dynamic player in the RNA synthesis machine, influencing essential aspects of polymerase structure and function.


Asunto(s)
Modelos Biológicos , Fosfoproteínas/metabolismo , Conformación Proteica , ARN Polimerasa Dependiente del ARN/metabolismo , Vesiculovirus/enzimología , Proteínas Estructurales Virales/metabolismo , Replicación Viral/fisiología , Western Blotting , Cromatografía en Gel , Cromatografía Líquida de Alta Presión , Espectrometría de Masas , Microscopía Electrónica , Proteínas de la Nucleocápside/metabolismo , Proteínas Virales/metabolismo
10.
J Theor Biol ; 363: 262-70, 2014 Dec 21.
Artículo en Inglés | MEDLINE | ID: mdl-25150459

RESUMEN

The personal choices affecting the transmission of infectious diseases include the number of contacts an individual makes, and the risk-characteristics of those contacts. We consider whether these different choices have distinct implications for the course of an epidemic. We also consider whether choosing contact mitigation (how much to mix) and affinity mitigation (with whom to mix) strategies together has different epidemiological effects than choosing each separately. We use a set of differential equation compartmental models of the spread of disease, coupled with a model of selective mixing. We assess the consequences of varying contact or affinity mitigation as a response to disease risk. We do this by comparing disease incidence and dynamics under varying contact volume, contact type, and both combined across several different disease models. Specifically, we construct a change of variables that allows one to transition from contact mitigation to affinity mitigation, and vice versa. In the absence of asymptomatic infection we find no difference in the epidemiological impacts of the two forms of disease risk mitigation. Furthermore, since models that include both mitigation strategies are underdetermined, varying both results in no outcome that could not be reached by choosing either separately. Which strategy is actually chosen then depends not on their epidemiological consequences, but on the relative cost of reducing contact volume versus altering contact type. Although there is no fundamental epidemiological difference between the two forms of mitigation, the social cost of alternative strategies can be very different. From a social perspective, therefore, whether one strategy should be promoted over another depends on economic not epidemiological factors.


Asunto(s)
Trazado de Contacto/estadística & datos numéricos , Brotes de Enfermedades/prevención & control , Transmisión de Enfermedad Infecciosa , Modelos Biológicos , Factores Epidemiológicos , Humanos , Incidencia
11.
Proc Natl Acad Sci U S A ; 108(15): 6306-11, 2011 Apr 12.
Artículo en Inglés | MEDLINE | ID: mdl-21444809

RESUMEN

The science and management of infectious disease are entering a new stage. Increasingly public policy to manage epidemics focuses on motivating people, through social distancing policies, to alter their behavior to reduce contacts and reduce public disease risk. Person-to-person contacts drive human disease dynamics. People value such contacts and are willing to accept some disease risk to gain contact-related benefits. The cost-benefit trade-offs that shape contact behavior, and hence the course of epidemics, are often only implicitly incorporated in epidemiological models. This approach creates difficulty in parsing out the effects of adaptive behavior. We use an epidemiological-economic model of disease dynamics to explicitly model the trade-offs that drive person-to-person contact decisions. Results indicate that including adaptive human behavior significantly changes the predicted course of epidemics and that this inclusion has implications for parameter estimation and interpretation and for the development of social distancing policies. Acknowledging adaptive behavior requires a shift in thinking about epidemiological processes and parameters.


Asunto(s)
Adaptación Psicológica , Conducta , Enfermedades Transmisibles/epidemiología , Modelos Económicos , Modelos Psicológicos , Enfermedades Transmisibles/economía , Enfermedades Transmisibles/transmisión , Humanos
12.
Neuro Oncol ; 2024 Jul 19.
Artículo en Inglés | MEDLINE | ID: mdl-39028616

RESUMEN

BACKGROUND: Glioblastoma is a highly aggressive brain cancer that is resistant to conventional immunotherapy strategies. Botensilimab, an Fc-enhanced anti-CTLA-4 antibody (FcE-aCTLA-4), has shown durable activity in "cold" and immunotherapy-refractory cancers. METHOD: We evaluated the efficacy and immune microenvironment phenotype of a mouse analogue of FcE-aCTLA-4 in treatment-refractory preclinical models of glioblastoma, both as a monotherapy and in combination with doxorubicin delivered via low-intensity pulsed ultrasound and microbubbles (LIPU/MB). Additionally, we studied 4 glioblastoma patients treated with doxorubicin, anti-PD-1 with concomitant LIPU/MB to investigate the novel effect of doxorubicin modulating FcγR expressions in tumor associated macrophages/microglia (TAMs). RESULTS: FcE-aCTLA-4 demonstrated high-affinity binding to FcγRIV, the mouse ortholog of human FcγRIIIA, which was highly expressed in TAMs in human glioblastoma, most robustly at diagnosis. Notably, FcE-aCTLA-4 mediated selective depletion of intra-tumoral regulatory T cells (Tregs) via TAM-mediated phagocytosis, while sparing peripheral Tregs. Doxorubicin, a chemotherapeutic drug with immunomodulatory functions, was found to upregulate FcγRIIIA on TAMs in glioblastoma patients who received doxorubicin and anti-PD-1 with concomitant LIPU/MB. In murine models of immunotherapy-resistant gliomas, a combinatorial regimen of FcE-aCTLA-4, anti-PD-1, and doxorubicin with LIPU/MB, achieved a 90% cure rate, that was associated robust infiltration of activated CD8+ T cells and establishment of immunological memory as evidenced by rejection upon tumor rechallenge. CONCLUSION: Our findings demonstrate that FcE-aCTLA-4 promotes robust immunomodulatory and anti-tumor effects in murine gliomas and is significantly enhanced when combined with anti-PD-1, doxorubicin, and LIPU/MB. We are currently investigating this combinatory strategy in a clinical trial (clinicaltrials.gov NCT05864534).

13.
Cancer Discov ; 2024 Jul 31.
Artículo en Inglés | MEDLINE | ID: mdl-39083809

RESUMEN

Conventional immune checkpoint inhibitors (ICI) targeting CTLA-4 elicit durable survival, but primarily in patients with immune-inflamed tumors. Although the mechanisms underlying response to anti-CTLA-4 remain poorly understood, Fc-gamma receptor (FcγR) IIIA co-engagement appears critical for activity, potentially explaining the modest clinical benefits of approved anti-CTLA-4 antibodies. We demonstrate that anti-CTLA-4 engineered for enhanced FcγR affinity leverages FcγR-dependent mechanisms to potentiate T cell responsiveness, reduce intratumoral Tregs, and enhance antigen presenting cell activation. Fc-enhanced anti-CTLA-4 promoted superior efficacy in mouse models and remodeled innate and adaptive immunity versus conventional anti-CTLA-4. These findings extend to patients treated with botensilimab, an Fc-enhanced anti-CTLA-4 antibody, with clinical activity across multiple poorly immunogenic and ICI treatment-refractory cancers. Efficacy was independent of tumor neoantigen burden or FcγRIIIA genotype. However, FcγRIIA and FcγRIIIA expression emerged as potential response biomarkers. These data highlight the therapeutic potential of Fc-enhanced anti-CTLA-4 antibodies in cancers unresponsive to conventional ICI therapy.

14.
J Virol ; 86(16): 8720-9, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22674999

RESUMEN

The vesicular stomatitis virus (VSV) nucleoprotein (N) associates tightly with the viral genomic RNA. This N-RNA complex constitutes the template for the RNA-dependent RNA polymerase L, which engages the nucleocapsid via its phosphoprotein cofactor P. While N and P proteins play important roles in regulating viral gene expression, the molecular basis of this regulation remains incompletely understood. Here we show that mutations in the extreme C terminus of N cause defects in viral gene expression. To determine the underlying cause of such defects, we examined the effects of the mutations separately on encapsidation and RNA synthesis. Expression of N together with P in Escherichia coli results predominantly in the formation of decameric N-RNA rings. In contrast, nucleocapsid complexes containing the substitution N(Y415A) or N(K417A) were more loosely coiled, as revealed by electron microscopy (EM). In addition, the N(EF419/420AA) mutant was unable to encapsidate RNA. To further characterize these mutants, we engineered an infectious cDNA clone of VSV and employed N-RNA templates from those viruses to reconstitute RNA synthesis in vitro. The transcription assays revealed specific defects in polymerase utilization of the template that result in overall decreased RNA quantities, including reduced amounts of leader RNA. Passage of the recombinant viruses in cell culture led to the accumulation of compensatory second-site mutations in close proximity to the original mutations, underscoring the critical role of structural features within the C terminus in regulating N function.


Asunto(s)
Nucleoproteínas/metabolismo , ARN Viral/metabolismo , Vesiculovirus/fisiología , Proteínas Virales/metabolismo , Ensamble de Virus , Replicación Viral , Cápside/ultraestructura , Análisis Mutacional de ADN , Escherichia coli/genética , Expresión Génica , Microscopía Electrónica , Unión Proteica , Multimerización de Proteína
15.
Bull Math Biol ; 75(4): 565-88, 2013 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-23408009

RESUMEN

The conditions that can lead to the exploitative depletion of a shared resource, i.e., the tragedy of the commons, can be reformulated as a game of prisoner's dilemma: while preserving the common resource is in the best interest of the group, over-consumption is in the interest of each particular individual at any given point in time. One way to try and prevent the tragedy of the commons is through infliction of punishment for over-consumption and/or encouraging under-consumption, thus selecting against over-consumers. Here, the effectiveness of various punishment functions in an evolving consumer-resource system is evaluated within a framework of a parametrically heterogeneous system of ordinary differential equations (ODEs). Conditions leading to the possibility of sustainable coexistence with the common resource for a subset of cases are identified analytically using adaptive dynamics; the effects of punishment on heterogeneous populations with different initial composition are evaluated using the reduction theorem for replicator equations. Obtained results suggest that one cannot prevent the tragedy of the commons through rewarding of under-consumers alone--there must also be an implementation of some degree of punishment that increases in a nonlinear fashion with respect to over-consumption and which may vary depending on the initial distribution of clones in the population.


Asunto(s)
Conservación de los Recursos Naturales/métodos , Ecosistema , Teoría del Juego , Modelos Teóricos , Conducta Cooperativa , Castigo
16.
Nat Commun ; 14(1): 3763, 2023 06 23.
Artículo en Inglés | MEDLINE | ID: mdl-37353482

RESUMEN

Altered protein phosphorylation in cancer cells often leads to surface presentation of phosphopeptide neoantigens. However, their role in cancer immunogenicity remains unclear. Here we describe a mechanism by which an HLA-B*0702-specific acute myeloid leukemia phosphoneoantigen, pMLL747-755 (EPR(pS)PSHSM), is recognized by a cognate T cell receptor named TCR27, a candidate for cancer immunotherapy. We show that the replacement of phosphoserine P4 with serine or phosphomimetics does not affect pMHC conformation or peptide-MHC affinity but abrogates TCR27-dependent T cell activation and weakens binding between TCR27 and pMHC. Here we describe the crystal structures for TCR27 and cognate pMHC, map of the interface produced by nuclear magnetic resonance, and a ternary complex generated using information-driven protein docking. Our data show that non-covalent interactions between the epitope phosphate group and TCR27 are crucial for TCR specificity. This study supports development of new treatment options for cancer patients through target expansion and TCR optimization.


Asunto(s)
Fosfopéptidos , Receptores de Antígenos de Linfocitos T , Humanos , Fosfopéptidos/metabolismo , Unión Proteica
17.
PLoS Pathog ; 6(9): e1001038, 2010 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-20862324

RESUMEN

Arenaviridae synthesize viral mRNAs using short capped primers presumably acquired from cellular transcripts by a 'cap-snatching' mechanism. Here, we report the crystal structure and functional characterization of the N-terminal 196 residues (NL1) of the L protein from the prototypic arenavirus: lymphocytic choriomeningitis virus. The NL1 domain is able to bind and cleave RNA. The 2.13 Å resolution crystal structure of NL1 reveals a type II endonuclease α/ß architecture similar to the N-terminal end of the influenza virus PA protein. Superimposition of both structures, mutagenesis and reverse genetics studies reveal a unique spatial arrangement of key active site residues related to the PD…(D/E)XK type II endonuclease signature sequence. We show that this endonuclease domain is conserved and active across the virus families Arenaviridae, Bunyaviridae and Orthomyxoviridae and propose that the arenavirus NL1 domain is the Arenaviridae cap-snatching endonuclease.


Asunto(s)
Endonucleasas/química , Endorribonucleasas/química , Endorribonucleasas/metabolismo , Virus de la Coriomeningitis Linfocítica/genética , ARN Mensajero/genética , ARN Viral/genética , Transcripción Genética , Bunyaviridae/genética , Bunyaviridae/metabolismo , Dominio Catalítico , Cristalización , Cristalografía por Rayos X , Endonucleasas/genética , Endonucleasas/metabolismo , Endorribonucleasas/genética , Virus de la Coriomeningitis Linfocítica/metabolismo , Modelos Moleculares , Mutagénesis , Orthomyxoviridae/genética , Orthomyxoviridae/metabolismo , Estructura Terciaria de Proteína , ARN Mensajero/metabolismo
18.
Virologie (Montrouge) ; 16(4): 258-268, 2012 Aug 01.
Artículo en Inglés | MEDLINE | ID: mdl-33065884

RESUMEN

The order Mononegavirales comprises viruses representing a large variety of human, animal and plant pathogens. These viruses have a non-segmented negative stranded RNA genome encoding their own RNA dependent RNA polymerase, the large protein L used to transcribe and replicate their genome. Due to the absence of methods to produce purified recombinant L proteins, these later were poorly characterized. Recently, the vesicular stomatitis virus L protein has been purified and used for structural and functional analysis. Electron microscopy images of L provided the first structural insight into the molecular architecture of L, and its conserved regions were mapped. Moreover, a new in vitro assay was developed and the mechanism by which L initiates RNA synthesis has been characterized, as well as the effects of its co-factor, the phosphoprotein P, on its own activity. This system constitutes a powerful tool to screen inhibitors directed specifically against the polymerase activity of L. These data have led to significant progress into the understanding of how the replicative machinery of these viruses function.

19.
Am J Public Health ; 101 Suppl 1: S295-300, 2011 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-21555656

RESUMEN

OBJECTIVES: We aimed to test the hypothesized role of shared body size norms in the social contagion of body size and obesity. METHODS: Using data collected in 2009 from 101 women and 812 of their social ties in Phoenix, Arizona, we assessed the indirect effect of social norms on shared body mass index (BMI) measured in 3 different ways. RESULTS: We confirmed Christakis and Fowler's basic finding that BMI and obesity do indeed cluster socially, but we found that body size norms accounted for only a small portion of this effect (at most 20%) and only via 1 of the 3 pathways. CONCLUSIONS: If shared social norms play only a minor role in the social contagion of obesity, interventions targeted at changing ideas about appropriate BMIs or body sizes may be less useful than those working more directly with behaviors, for example, by changing eating habits or transforming opportunities for and constraints on dietary intake.


Asunto(s)
Análisis por Conglomerados , Obesidad/psicología , Conducta Social , Adolescente , Adulto , Arizona/epidemiología , Índice de Masa Corporal , Familia , Femenino , Humanos , Relaciones Interpersonales , Entrevistas como Asunto , Persona de Mediana Edad , Obesidad/epidemiología , Adulto Joven
20.
J Theor Biol ; 267(1): 35-40, 2010 Nov 07.
Artículo en Inglés | MEDLINE | ID: mdl-20670632

RESUMEN

An SIS/SAS model of gonorrhea transmission in a population of highly active men-having-sex-with-men (MSM) is presented in this paper to study the impact of safe behavior on the dynamics of gonorrhea prevalence. Safe behaviors may fall into two categories-prevention and self-awareness. Prevention will be modeled via consistent condom use and self-awareness via STD testing frequency. Stability conditions for the disease free equilibrium and endemic equilibrium are determined along with a complete analysis of global dynamics. The control reproductive number is used as a means for measuring the effect of changes to model parameters on the prevalence of the disease. We also find that appropriate intervention would be in the form of a multifaceted approach at overall risk reduction rather than tackling one specific control individually.


Asunto(s)
Gonorrea/transmisión , Homosexualidad Masculina , Modelos Teóricos , Sexo Seguro , Gonorrea/epidemiología , Gonorrea/prevención & control , Humanos , Masculino , Prevalencia
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