Resonant electron capture by polycyclic aromatic hydrocarbon molecules: Effects of aza-substitution.

Resonant electron capture by aza and diaza derivatives of phenanthrene (7,8-benzoquinoline and 1,10-phenanthroline) and anthracene (acridine and phenazine) at incident free electron energies (Ee) in the range of 0-15 eV was studied. All compounds except 7,8-benzoquinoline form long-lived molecular ions (M-) at thermal electron energies (Ee ∼ 0 eV). Acridine and phenazine also form such ions at epithermal electron energies up to Ee = 1.5-2.5 eV. The lifetimes (τa) of M- with respect to electron autodetachment are proportional to the extent of aza-substitution and increase on going from molecules with bent geometry of the fused rings (azaphenanthrenes) to linear isomers (azaanthracenes). These regularities are due to an increase in the adiabatic electron affinities (EAa) of the molecules. The EAa values of the molecules under study were comprehensively assessed based on a comparative analysis of the measured τa values using the Rice-Ramsperger-Kassel-Marcus theory, the electronic structure analysis using the molecular orbital approach, as well as the density functional calculations of the total energy differences between the molecules and anions. The only fragmentation channel of M- ions from the compounds studied is abstraction of hydrogen atoms. When studying [M-H]- ions, electron autodetachment processes were observed, the τa values were measured, and the appearance energies were determined. A comparative analysis of the gas-phase acidity of the molecules and the EAa values of the [M-H]· radicals revealed their proportionality to the EAa values of the parent molecules.

Role of Elevated Serum TGF-ß1 and the Common Promoter TGFB1-509C/T Polymorphism in the Development and Progression of Primary Glial Tumors and Brain Metastases.

Background and Objectives: The role of transforming growth factor-beta1 (TGF-ß1) has been widely studied in the context of carcinogenesis. It has been involved in the pathogenesis of primary brain tumors or brain metastases due to its pleiotropic effects on immune regulation and tissue homeostasis. In line with recent findings, the aim of the current study was to examine the role of circulating TGF-ß1 and the -509C/T functional polymorphism (rs1800469) in the TGFB1 gene promoter in the susceptibility and progression of primary brain tumors and brain metastases among patients from the Bulgarian population. Materials and Methods: Cases with a confirmed diagnosis were genotyped by the polymerase chain reaction-restriction fragment length polymorphism assay (PCR-RFLP). Serum TGF-ß1 levels were determined by ELISA. Immunohistochemical evaluation of the expression of TGF-ß1 and the TGF-ß1 receptor-type II was conducted. Results: We observed that TGF-ß1 serum levels correlate with the genotype and are sex-related. TGF-ß1 serum levels were significantly elevated in patients compared to controls. Additionally, the T/T-genotype determined higher circulating levels of the cytokine. The same genotype determined the shorter median survival after surgery for the patients. The immunohistochemical analysis revealed a statistical tendency: cases expressing TGF-ß1 in the cytoplasm had elevated levels of the cytokine in the serum compared to the negative cases. Conclusions: Overall, our results indicate a negative effect of the T-allele on the predisposition and prognosis of brain malignancies, and the genetically determined higher TGF-ß1 serum levels might contribute to the worse prognosis and metastatic capacity of brain malignancies.

Terahertz diffractive imaging with saturated data inpainting.

Multiplane iterative phase retrieval is a promising approach to diffraction imaging, which accurately determines the topographic and internal characteristics of various objects. Nevertheless, the detection systems used often have a limited dynamic range, resulting in overexposure of recorded intensity distributions. In this Letter, we present a novel, to the best of our knowledge, reconstruction algorithm that inpaints saturated areas on the measured intensity datasets and reliably retrieves wave complex amplitude. The proposed technique can be used in various spectral ranges, while we have tested it in the terahertz frequency range, where the problem of sources and detectors is most acute. We show that retrieved amplitude and phase distributions have a quality comparable to that of the images reconstructed from the reference high dynamic range technique. Herewith, the proposed approach seriously simplifies the process of data acquisition, what expands the possibilities in the design of measurement tools and studies of dynamic scenes.

Analog-to-digital conversion of information archived in display holograms: I. discussion.

This discussion paper highlights the potential of display holograms in the storage of information about objects' shape. The images recorded and reconstructed from holograms have high visual appeal, and the holographic carrier has far higher information capacity than other storage media. One hindrance to the application of display holograms is the inadequate development of techniques for digitizing information from them, which is compounded by insufficient analysis and discussion of existing approaches. In this review, we provide a historical retrospective of the use of display holography to save comprehensive information on object morphology. We also discuss existing and emerging technologies for converting information into a digital format, addressing one of the most serious challenges to the widespread use of display holography. Potential applications of these technologies are also analyzed.

Analog-to-digital conversion of information archived in display holograms: II. photogrammetric digitization.

We demonstrate the opportunities of photogrammetry in digitizing information about objects by acquiring a set of photographic images captured from three-dimensional scenes, which are reconstructed from volume reflection holograms. The corresponding requirements are determined for both recording the display hologram and digitizing the information reconstructed from it by photogrammetry. They include the choice of the radiation source used to reconstruct the object wave from the hologram; requirements for object positioning when recording a display hologram relative to the recording medium; and requirements for the glare minimization procedure during the construction of a photogrammetric three-dimensional model.

Simulating behavior to help researchers build experiments.

Testing that an experiment works as intended is critical for identifying design problems and catching technical errors that could invalidate the results. Testing is also time-consuming because of the need to manually run the experiment. This makes testing the experiment costly for researchers, and therefore testing is less comprehensive than in other kinds of software development where tools to automate and speed up the testing process are widely used. In this paper, we describe an approach that substantially reduces the time required to test behavioral experiments: automated simulation of participant behavior. We describe how software that is used to build experiments can use information contained in the experiment's code to automatically generate plausible participant behavior. We demonstrate this through an implementation using jsPsych. We then describe four potential scenarios where automated simulation of participant behavior can improve the way researchers build experiments. Each scenario includes a demo and accompanying code. The full set of examples can be found at https://jspsych.github.io/simulation-examples/ .

Open-source 3D-printed terahertz pulse time-domain holographic detection module.

We present a holographic detection module to measure the spatially resolved distribution of pulsed terahertz field in a single scan by a motorized translation stage, responsible for the time delay. All mounts of the optical elements of the module are easily reproduced by 3D printing and attached to the optical cage system. The latter greatly simplifies the measurement procedure, allowing the experimenter to move and adjust the detection system as a single device. The developed mounts are made universal and can be used in other setups. We have made 3D models available as open-source hardware. The module is based on an electro-optical detection scheme with wide-aperture ZnTe crystal, crossed polarizers, and a matrix photodetector. The validation of its operability was performed with two experiments to measure the spatial distribution of the unperturbed field from the generator and the vortex field formed by the spiral phase plate. Optical vortices with multiple topological charges of 2-4 were detected on spectral components in the range from 0.3 to 1.1 THz. In addition, we have detailed the alignment process of terahertz imaging systems.

Noncollinear degenerate phase modulation in samples with inhomogeneous optical nonlinear properties [Invited].

Digital inline pump-probe holography can be applied to estimate parameters of samples' optical nonlinear properties. Here we propose a mathematical model to describe noncollinear degenerate phase modulation in samples with inhomogeneities of nonlinear refractive index over all three dimensions, namely, two-layered samples and samples with local impurities. The impact of sample parameters in the considered configurations is analyzed. We show that analysis of inline digital holograms obtained by time-resolved inline digital holography can be successfully used for rapid detection and characterization of various types of nonlinear refractive index inhomogeneities.

Terahertz phase retrieval imaging in reflection.

Terahertz phase retrieval is a promising technique able to assess the complex diffracted wave properties through an iterative processing algorithm. In this Letter, we demonstrate the implementation of this technique in reflection geometry with a continuous wave acquisition system working at 0.287 THz. To ensure a high signal-to-noise ratio in the measured dataset, we proposed a double parallel recording scheme with one detector and two lock-in amplifiers operating with the complimentary sensitivity setting. This provided a higher numerical aperture than conventional raster-scanning focal plane imaging. A specialized digital interferometric postprocessing procedure was applied to obtain a surface height map from the reconstructed phase distribution in the object's irradiated area.

Hyperspectral data denoising for terahertz pulse time-domain holography.

We investigated data denoising in hyperspectral terahertz pulse time-domain holography. Using the block-matching algorithms adapted for spatio-temporal and spatio-spectral volumetric data we studied and optimized parameters of these algorithms to improve phase image reconstruction quality. We propose a sequential application of the two algorithms oriented on work in temporal and spectral domains. Experimental data demonstrate the improvement in the quality of the resultant time-domain images as well as phase images and object's relief. The simulation results are proved by comparison with the experimental ones.

Terahertz pulse time-domain holography with balance detection: complex-domain sparse imaging.

We investigated the peculiarities of the terahertz pulse time-domain holography principle in the case of raster scanning with the balance detection system. The noise in this system represents a Skellam distribution model, which differentiates it from systems based on a photoconductive antenna. We analyzed this Skellam model and provided both numerical and experimental investigations. We found that the variance of the noise in the balance detection system does not depend on the true signal. Complex-domain images obtained in this model are filtered by block-matching algorithms adapted for spatio-temporal and spatiospectral volumetric data. We presented a new cube complex-domain filter algorithm that uses block matching in all 3D data sets simultaneously in spatial and frequency coordinates. A combination of temporal and complex-domain filters allows us to expand the dynamic range of terahertz frequencies for which we can obtain amplitude/phase information. Experimental data demonstrate an improvement in the quality of the resultant images both in the time domain and complex-spectral domain. The simulation and experimental results are in good agreement.

Resolution and contrast in terahertz pulse time-domain holographic reconstruction.

Here, we present a comprehensive study of the reconstruction quality in terahertz (THz) pulse time-domain holography. We look into single wavelength reconstructions, as well as broadband recovery enabled by the ultrabroadband nature of radiation and coherent detection enabled by electro-optic or photoconductive sensing. We demonstrate the transverse resolution dependence for amplitude and phase objects on the solid angle of the inline recorded time-domain THz hologram, and then turn to the contrast of reconstructed binary amplitude objects, and further to longitudinal resolution of phase objects. We show that transverse resolution can reach values comparable to the wavelength of the radiation used, and longitudinally, phase objects can be resolved with even greater precision. We compare the obtained resolution with theoretical estimates and show that THz pulse time-domain holography is a powerful non-contact imaging tool.

Spatio-temporal and spatiospectral metrology of terahertz broadband uniformly topologically charged vortex beams.

A comprehensive characterization of the diffraction properties of terahertz (THz) pulsed broadband vortex beams consisting of several electromagnetic field oscillations requires state-of-the-art techniques for studying the evolution of a wavefront as it propagates. For this purpose, we have applied the capabilities offered by THz pulse time domain holography. Accurate metrological study of pulsed single-period THz field propagation allowed us to reveal the spatio-temporal and spatiospectral couplings in broadband uniformly topologically charged vortex beams. Here, we reveal dynamics of such beam propagation in a free space as well as in the experiment with edge diffraction with 50% blocking of the beam focal waist. In this study, we compare the dynamics of freely propagating and edge-diffracted THz vortex. Despite the fact that in the amplitude representation one can observe the emergence of strong asymmetry, analysis of the spectral trajectory of the singular point at some distance from the obstacle and the visualization of phase distribution for individual spectral components testify to the conservation of transverse energy circulation. Similar to the edge diffraction of monochromatic optical vortices, it can be interpreted as self-reconstruction of vortex properties. The given term has not previously been used for the case of pulsed broadband THz beams, to the best of our knowledge.

Effect of object thickness on ultrashort pulse diffraction.

When calculated in the spectral domain, the propagation of an ultrashort optical pulse may suffer from inaccuracy due to the finite thickness of the object it diffracts on. Unlike monochromatic radiation, ultrashort pulse interaction with an object in the time domain depends on the pulse longitudinal coordinate. Here, we propose an algorithm to study the effect of the object thickness on ultrashort pulse diffraction on amplitude, phase, and three-dimensional highly scattering objects. The algorithm comprises a stepwise approach to simulating the diffraction of ultrashort pulses on apertures or scatterers having a finite thickness. We confirm the applicability of the approach and convergence of the result upon reducing the simulation step. We compare the simulation results obtained with traditionally calculated wavefields and the updated results obtained with the proposed approach. We reveal a discrepancy of about 7% for pulsed radiation with λ=800nm on a 1 mm thick object. Then, we demonstrate the dependence of this mismatch on the object thickness and show that for non-Gaussian vortex beams, this effect is even more pronounced. We reveal that spatiotemporal coupling effects depend on the pulse-object interaction simulation approach as well. The obtained results demonstrate that applicability of the single-layer representation of the simulated object strongly depends on its specific features, and inaccuracy of such an approach strongly depends on individual characteristics of the object.

Spectral Object Recognition in Hyperspectral Holography with Complex-Domain Denoising.

In this paper, we have applied a recently developed complex-domain hyperspectral denoiser for the object recognition task, which is performed by the correlation analysis of investigated objects' spectra with the fingerprint spectra from the same object. Extensive experiments carried out on noisy data from digital hyperspectral holography demonstrate a significant enhancement of the recognition accuracy of signals masked by noise, when the advanced noise suppression is applied.

High-accuracy off-axis wavefront reconstruction from noisy data: local least square with multiple adaptive windows.

A variational algorithm to object wavefront reconstruction from noisy intensity observations is developed for the off-axis holography scenario with imaging in the acquisition plane. The algorithm is based on the local least square technique proposed in paper [J. Opt. Soc. Am. A21, 367 (2004)]. First, multiple reconstructions of the wavefront are produced for various size and various directional windows applied for localization of estimation. At the second stage, a special statistical rule is applied in order to select the best window size estimate for each pixel of the image and for each of the directional windows. At the third final stage the estimates of the different directions obtained for each pixel are aggregated in the final one. Simulation experiments and real data processing prove that the developed algorithm demonstrate the performance of the extraordinary quality and accuracy for both the phase and amplitude of the object wavefront.

Induction of resistance to potato virus Y strain NTN in potato plants through RNAi.

Potato viruses cause enormous economic loss in agriculture production. Potatoes can be infected by a number of different viruses that affect negatively the harvest and the tuber quality. Direct and effective drugs against plant virus diseases are still not available and control is only applied as agricultural measures and pesticides against virus vectors. Potato virus Y (PVY) is transmitted by aphids in non-persistent manner and on that account using insecticides to prevent spread of the infection is useless. Breeding of resistant plant cultivars proved to be not always a solution of the problem because of the fast evolution of the virus strains and the constantly growing group of recombinants. In this study, we have proposed a new way of controlling the virus by blocking replication and transmission through the plant by RNAi-based vaccination of potato seedlings with specific to viral HC-Pro gene siRNAs. Thus, PVY replication is decreased without altering the valuable qualities of the sensitive to the virus potato cultivars like Agria.

Antimicrobial Compounds in Wine.

Ipsum vinum est potestas et possession (wine itself is power and possession). Wine is a complex system that triggers multisensory cognitive stimuli. Wine and its consumption are thoroughly intertwined with the development of human society. The beverage was appreciated in many ancient mythologies and plays an essential part in Christianity and rituals to this day. Wine has been said to enlighten and inspire artists and has even been prohibited by law and some religions, but has nevertheless played a role in human civilizations since the beginning. Winemaking is also a prospering and economically important industry and a longtime symbol of status and luxury. In winemaking, the formation of the final product is influenced by several factors that contribute to the chemical and sensory complexity often associated with quality vintages. Factors such as terroir, climatic conditions, variety of the grape, all aspects of the winemaking process to the smallest details, including metabolic processes carried out by yeast and malolactic bacteria, and the conditions for the maturation and storage of the final product, up to, and even beyond the point of deciding to open the bottle and enjoy the wine. In conjunction with the empiric and scientific process of winemaking, different molecules with antibacterial activity can be identified in wine during the production process, and several of them are clearly present in the final product. Some of these antibacterial components are phytochemicals, such as flavonoids and phenolic compounds, that may be delivered to the final product (wine) as a part of the grape, a variety of potential additive compounds, or from the oak barrels or clay amphoras used during the maturation process. Others are produced by yeasts and malolactic bacteria and play a role not only in the moderation of the fermentation process but contributing to the microbiological safety and beneficial properties spectra of the final product. Lactic acid bacteria, responsible for conducting malolactic fermentation, contribute to the final balance of the wine but are also directly involved in the production of different compounds exhibiting antibacterial activity. Some examples of these compounds include bacteriocins (antibacterial peptides), diacetyl, organic acids, reuterin, hydrogen peroxide, and carbon dioxide. Major aspects of these different beneficial metabolites are the subject of discussion in this review with the aim of highlighting their beneficial functions.

Phase Retardation Analysis in a Rotated Plane-Parallel Plate for Phase-Shifting Digital Holography.

In this paper, we detail a phase-shift implementation in a rotated plane-parallel plate (PPP). Considering the phase-shifting digital holography application, we provide a more precise phase-shift estimation based on PPP thickness, rotation, and mutual inclination of reference and object wavefronts. We show that phase retardation uncertainty implemented by the rotated PPP in a simple configuration is less than the uncertainty of a traditionally used piezoelectric translator. Physical experiments on a phase test target verify the high quality of phase reconstruction.

Optimization of DMD-based independent amplitude and phase modulation by analysis of target complex wavefront.

The paper presents the results of a comprehensive study on the optimization of independent amplitude and phase wavefront manipulation which is implemented using a binary digital micromirror device. The study aims to investigate the spatial resolution and quantization achievable using this approach and its optimization based on the parameters of the target complex wave and the modulation error estimation. Based on a statistical analysis of the data, an algorithm for selecting parameters (carrier frequency of binary pattern and aperture for the first diffraction order filtering) that ensures the optimal quality of the modulated wavefront was developed. The algorithm takes into account the type of modulation, that is, amplitude, phase, or amplitude-phase, the size of the encoded distribution, and its requirements for spatial resolution and quantization. The results of the study will greatly contribute to the improvement of modulated wavefront quality in various applications with different requirements for spatial resolution and quantization.