Isolation of an APRT heterozygote from TK6 human lymphoblasts: predominance of multi-locus loss of heterozygosity among spontaneous APRT-mutants.

The TK6 human B lymphoblastoid cell line contains two easily and widely used selectable markers: the X-linked, hemizygous hprt locus, and the heterozygous tk locus on chromosome 17q. In this study, rare APRT heterozygotes were directly isolated from the TK6 population by clonal selection in cell culture medium supplemented with 5 micrograms/ml of 8-azaadenine. One of nine isolated heterozygotes, AZH1, was characterized extensively. APRT- mutants can be recovered from AZH1 at a mutation rate of 1.5 x 10(-7), similar to rates previously determined for the selection of TK- and HPRT- mutants from TK6. A unique sequence alteration was identified in the non-functional aprt allele at position 1930. A G:C to A:T transition at this site alters the canonical AG splice acceptor dinucleotide in exon 3, and also results in the destruction of a Stul recognition sequence. This polymorphism was used to analyze loss of heterozygosity in a set of 32 spontaneous APRT- mutants by restriction analysis following PCR amplification. Analysis of flanking microsatellite dinucleotide polymorphisms demonstrated that LOH occurring in spontaneous APRT- mutants is nearly always a multi-locus event extending at least 7.5 cM along chromosome 16q. This pattern of LOH among APRT- mutants differs from extensive LOH in spontaneous, normal-growth TK- mutants derived from TK6 cells (p < 0.0001), and suggests that cis-acting factors may be equally important in shaping the mutational spectrum as trans-acting factors such as cellular apoptotic capacity.

Mutational spectrum of X-ray induced TK- human cell mutants.

Mutations induced by ionizing radiation have historically elicited significant public concern. However, only a limited database of ionizing radiation-induced point mutations is available, particularly at endogenous human cell loci. Here, we report the mutational spectrum for 184 X-ray induced TK- mutants derived from TK6 human lymphoblasts. This report represents the first large scale utilization of the tk locus for investigation of mutational specificity at the DNA sequence level. Rapid, single nucleotide sequencing assays at frameshift polymorphism sites in tk exons 4 and 7 were used to partition TK- mutants into two groups: 126 were attributed to either partial gene deletion or to loss of heterozygosity, and DNA sequence alterations were identified for 51. X-ray-induced point mutations included all classes of transitions and transversions, tandem base substitutions, frameshifts, small deletions and a small duplication. The distribution within tk was characterized by clustering at some sites. Twelve TK- point mutations, including five entirely within the coding sequence in exons 3 and 4, resulted in aberrant splicing of the tk transcript. The spectrum of X-ray-induced point mutations was found to be highly reproducible when TK- mutations were compared with HPRT- mutations in TK6. A statistically significant decrease in transitions (P = 0.04) was observed in the combined data set as compared to the spontaneous background. These findings suggest a reproducible pattern which may be utilized in recognizing radiation-induced mutations at other loci of interest.