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1.

Nitrogen assimilation system in maize is regulated by developmental and tissue-specific mechanisms.

Plett, Darren; Holtham, Luke; Baumann, Ute; Kalashyan, Elena; Francis, Karen; Enju, Akiko; Toubia, John; Roessner, Ute; Bacic, Antony; Rafalski, Antoni; Dhugga, Kanwarpal S; Tester, Mark; Garnett, Trevor; Kaiser, Brent N.

Plant Mol Biol ; 92(3): 293-312, 2016 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-27511191

2.

The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA.

Regulski, Michael; Lu, Zhenyuan; Kendall, Jude; Donoghue, Mark T A; Reinders, Jon; Llaca, Victor; Deschamps, Stephane; Smith, Andrew; Levy, Dan; McCombie, W Richard; Tingey, Scott; Rafalski, Antoni; Hicks, James; Ware, Doreen; Martienssen, Robert A.

Genome Res ; 23(10): 1651-62, 2013 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-23739895

3.

Maize maintains growth in response to decreased nitrate supply through a highly dynamic and developmental stage-specific transcriptional response.

Plett, Darren; Baumann, Ute; Schreiber, Andreas W; Holtham, Luke; Kalashyan, Elena; Toubia, John; Nau, John; Beatty, Mary; Rafalski, Antoni; Dhugga, Kanwarpal S; Tester, Mark; Garnett, Trevor; Kaiser, Brent N.

Plant Biotechnol J ; 14(1): 342-53, 2016 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-26038196

4.

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.

Morgante, Michele; Brunner, Stephan; Pea, Giorgio; Fengler, Kevin; Zuccolo, Andrea; Rafalski, Antoni.

Nat Genet ; 37(9): 997-1002, 2005 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-16056225

5.

The response of the maize nitrate transport system to nitrogen demand and supply across the lifecycle.

Garnett, Trevor; Conn, Vanessa; Plett, Darren; Conn, Simon; Zanghellini, Juergen; Mackenzie, Nenah; Enju, Akiko; Francis, Karen; Holtham, Luke; Roessner, Ute; Boughton, Berin; Bacic, Antony; Shirley, Neil; Rafalski, Antoni; Dhugga, Kanwarpal; Tester, Mark; Kaiser, Brent N.

New Phytol ; 198(1): 82-94, 2013 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-23398565

6.

Endo-(1,4)-ß-glucanase gene families in the grasses: temporal and spatial co-transcription of orthologous genes.

Buchanan, Margaret; Burton, Rachel A; Dhugga, Kanwarpal S; Rafalski, Antoni J; Tingey, Scott V; Shirley, Neil J; Fincher, Geoffrey B.

BMC Plant Biol ; 12: 235, 2012 Dec 11.

Artículo en Inglés | MEDLINE | ID: mdl-23231659

7.

Allelic genome structural variations in maize detected by array comparative genome hybridization.

Beló, André; Beatty, Mary K; Hondred, David; Fengler, Kevin A; Li, Bailin; Rafalski, Antoni.

Theor Appl Genet ; 120(2): 355-67, 2010 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-19756477

8.

Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes.

Sun, Silong; Zhou, Yingsi; Chen, Jian; Shi, Junpeng; Zhao, Haiming; Zhao, Hainan; Song, Weibin; Zhang, Mei; Cui, Yang; Dong, Xiaomei; Liu, Han; Ma, Xuxu; Jiao, Yinping; Wang, Bo; Wei, Xuehong; Stein, Joshua C; Glaubitz, Jeff C; Lu, Fei; Yu, Guoliang; Liang, Chengzhi; Fengler, Kevin; Li, Bailin; Rafalski, Antoni; Schnable, Patrick S; Ware, Doreen H; Buckler, Edward S; Lai, Jinsheng.

Nat Genet ; 50(9): 1289-1295, 2018 09.

Artículo en Inglés | MEDLINE | ID: mdl-30061735

9.

Corn and humans: recombination and linkage disequilibrium in two genomes of similar size.

Rafalski, Antoni; Morgante, Michele.

Trends Genet ; 20(2): 103-11, 2004 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-14746992

10.

Applications of single nucleotide polymorphisms in crop genetics.

Rafalski, Antoni.

Curr Opin Plant Biol ; 5(2): 94-100, 2002 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-11856602

11.

Tagging the rice transcriptome.

Rafalski, Antoni.

Nat Biotechnol ; 25(4): 430-1, 2007 Apr.

Artículo en Inglés | MEDLINE | ID: mdl-17420749

12.

A Genome-Wide Association Study for Culm Cellulose Content in Barley Reveals Candidate Genes Co-Expressed with Members of the CELLULOSE SYNTHASE A Gene Family.

Houston, Kelly; Burton, Rachel A; Sznajder, Beata; Rafalski, Antoni J; Dhugga, Kanwarpal S; Mather, Diane E; Taylor, Jillian; Steffenson, Brian J; Waugh, Robbie; Fincher, Geoffrey B.

PLoS One ; 10(7): e0130890, 2015.

Artículo en Inglés | MEDLINE | ID: mdl-26154104

13.

SNP frequency, haplotype structure and linkage disequilibrium in elite maize inbred lines.

Ching, Ada; Caldwell, Katherine S; Jung, Mark; Dolan, Maurine; Smith, Oscar S; Tingey, Scott; Morgante, Michele; Rafalski, Antoni J.

BMC Genet ; 3: 19, 2002 Oct 07.

Artículo en Inglés | MEDLINE | ID: mdl-12366868

14.

Mutations in an AP2 transcription factor-like gene affect internode length and leaf shape in maize.

Jiang, Fukun; Guo, Mei; Yang, Fang; Duncan, Keith; Jackson, David; Rafalski, Antoni; Wang, Shoucai; Li, Bailin.

PLoS One ; 7(5): e37040, 2012.

Artículo en Inglés | MEDLINE | ID: mdl-22649507

15.

Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize.

Beló, André; Zheng, Peizhong; Luck, Stanley; Shen, Bo; Meyer, David J; Li, Bailin; Tingey, Scott; Rafalski, Antoni.

Mol Genet Genomics ; 279(1): 1-10, 2008 Jan.

Artículo en Inglés | MEDLINE | ID: mdl-17934760

16.

Brittle stalk 2 encodes a putative glycosylphosphatidylinositol-anchored protein that affects mechanical strength of maize tissues by altering the composition and structure of secondary cell walls.

Ching, Ada; Dhugga, Kanwarpal S; Appenzeller, Laura; Meeley, Robert; Bourett, Timothy M; Howard, Richard J; Rafalski, Antoni.

Planta ; 224(5): 1174-84, 2006 Oct.

Artículo en Inglés | MEDLINE | ID: mdl-16752131

17.

Origins, genetic organization and transcription of a family of non-autonomous helitron elements in maize.

Brunner, Stephan; Pea, Giorgio; Rafalski, Antoni.

Plant J ; 43(6): 799-810, 2005 Sep.

Artículo en Inglés | MEDLINE | ID: mdl-16146520

18.

Evolution of DNA sequence nonhomologies among maize inbreds.

Brunner, Stephan; Fengler, Kevin; Morgante, Michele; Tingey, Scott; Rafalski, Antoni.

Plant Cell ; 17(2): 343-60, 2005 Feb.

Artículo en Inglés | MEDLINE | ID: mdl-15659640

19.

Rapid genetic mapping of ESTs using SNP pyrosequencing and indel analysis.

Ching, Ada; Rafalski, Antoni.

Cell Mol Biol Lett ; 7(2B): 803-10, 2002.

Artículo en Inglés | MEDLINE | ID: mdl-12378241

20.

Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep.

Palaisa, Kelly; Morgante, Michele; Tingey, Scott; Rafalski, Antoni.

Proc Natl Acad Sci U S A ; 101(26): 9885-90, 2004 Jun 29.

Artículo en Inglés | MEDLINE | ID: mdl-15161968

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