RESUMEN
The biosynthesis of lupeol-3-(3'R-hydroxy)-stearate (procrim b, 1) was investigated in the Mexican medicinal plant Pentalinon andrieuxii by (13)CO2 pulse-chase experiments. NMR analyses revealed positional enrichments of (13)C2-isotopologues in both the triterpenoid and the hydroxystearate moieties of 1. Five of the six isoprene units reflected a pattern with [1,2-(13)C2]- and [3,5-(13)C2]-isotopologues from the respective C5-precursors, IPP and DMAPP, whereas one isoprene unit in the ring E of 1 showed only the [3,5-(13)C2]-connectivity of the original C5-precursor, due to rearrangement of the dammarenyl cation intermediate during the cyclization process. The presence of (13)C2-isotopologues was indicative of [(13)C2]acetyl-CoA being the precursor units in the formation of the fatty acid moiety and of the triterpene via the mevalonate route. The observed labeling pattern was in agreement with a chair-chair-chair-boat conformation of the (S)-2,3-oxidosqualene precursor during the cyclization process, suggesting that the lupeol synthase from P. andrieuxii is of the same type as that from Olea europea and Taraxacum officinale, but different from that of Arabidopsis thaliana. The study shows that (13)CO2 pulse-chase experiments are powerful in elucidating, under in vivo conditions and in a single experiment, the biosynthesis of complex plant products including higher terpenes.
Asunto(s)
Isótopos de Carbono/química , Transferasas Intramoleculares/química , Olea/química , Triterpenos Pentacíclicos/biosíntesis , Triterpenos Pentacíclicos/química , Triterpenos Pentacíclicos/síntesis química , Escualeno/análogos & derivados , Escualeno/química , Estearatos/síntesis química , Taraxacum/química , Triterpenos/síntesis química , Secuencia de Aminoácidos , Ciclización , Espectroscopía de Resonancia Magnética , Escualeno/síntesis química , Estearatos/química , Triterpenos/químicaRESUMEN
The natural formation of the bioactive C17-polyacetylenes (-)-(R)-panaxynol and panaxydol was analyzed by 13C-labeling experiments. For this purpose, plants of Panax ginseng were supplied with 13CO2 under field conditions or, alternatively, sterile root cultures of P. ginseng were supplemented with [U-13C6]glucose. The polyynes were isolated from the labeled roots or hairy root cultures, respectively, and analyzed by quantitative NMR spectroscopy. The same mixtures of eight doubly 13C-labeled isotopologues and one single labeled isotopologue were observed in the C17-polyacetylenes obtained from the two experiments. The polyketide-type labeling pattern is in line with the biosynthetic origin of the compounds via decarboxylation of fatty acids, probably of crepenynic acid. The 13C-study now provides experimental evidence for the biosynthesis of panaxynol and related polyacetylenes in P. ginseng under in planta conditions as well as in root cultures. The data also show that 13CO2 experiments under field conditions are useful to elucidate the biosynthetic pathways of metabolites, including those from roots.
Asunto(s)
Diinos/química , Alcoholes Grasos/química , Panax/química , Isótopos de Carbono/química , Cromatografía Líquida de Alta Presión , Diinos/metabolismo , Alcoholes Grasos/metabolismo , Espectroscopía de Resonancia Magnética , Panax/metabolismo , Raíces de Plantas/química , Raíces de Plantas/metabolismo , Poliinos/químicaRESUMEN
Cut seedlings of Mercurialis annua L. were supplied with solutions containing 5.4mM [U-(13)C(6)]glucose and 50 mM unlabelled glucose. The pyridinone type chromogen, hermidin, was isolated and analyzed by NMR spectroscopy. (13)C NMR spectra revealed the presence of [4,5,6-(13)C(3)]hermidin in significant amount. NMR analysis of amino acids obtained by hydrolysis of labelled biomass showed the presence of [U-(13)C(3)]alanine, whereas aspartate was found to be virtually unlabelled. Photosynthetic pulse labelling of M. annua plants with (13)CO(2) followed by a chase period in normal air afforded [4,5,6-(13)C(3)]- and [2,3-(13)C(2)]hermidin with significant abundance. [U-(13)C(3)]Alanine and multiply (13)C-labelled aspartate isotopologues were also found in significant abundance. The labelling patterns of hermidin obtained in the present study closely resemble those observed for the pyridine ring of nicotine under similar experimental conditions. This suggests that hermidin, like nicotine, is biosynthesized via the nicotinic acid pathway from dihydroxyacetone phosphate and aspartate. The data show that pulse/chase labelling of plants with (13)CO(2) generates isotopologue patterns that are similar to those obtained with totally labelled carbohydrate as tracer, but with the added advantage that experiments can be conducted under strictly physiological conditions. This experimental concept appears ripe for application to a wide variety of problems in plant physiology.
Asunto(s)
Euphorbiaceae/química , Piridonas/aislamiento & purificación , Dióxido de Carbono/química , Cromatografía de Gases y Espectrometría de Masas , Glucosa/química , Espectroscopía de Resonancia Magnética , Estructura Molecular , Ácidos Nicotínicos/química , Oxidación-Reducción , Piridonas/químicaRESUMEN
A tobacco plant was illuminated for 5h in an atmosphere containing (13)CO(2) and then maintained for 10 days under standard greenhouse conditions. Nicotine, glucose, and amino acids from proteins were isolated chromatographically. Isotopologue abundances of isolated metabolites were determined quantitatively by NMR spectroscopy and mass spectrometry. The observed non-stochastic isotopologue patterns indicate (i) formation of multiply labeled photosynthetic carbohydrates during the (13)CO(2) pulse phase followed by (ii) partial catabolism of the primary photosynthetic products, and (iii) recombination of the (13)C-labeled fragments with unlabeled intermediary metabolites during the chase period. The detected and simulated isotopologue profiles of glucose and amino acids reflect carbon partitioning that is dominated by the Calvin cycle and glycolysis/glucogenesis. Retrobiosynthetic analysis of the nicotine pattern is in line with its known formation from nicotinic acid and putrescine via aspartate, glyceraldehyde phosphate and alpha-ketoglutarate as basic building blocks. The study demonstrates that pulse/chase labeling with (13)CO(2) as precursor is a powerful tool for the analysis of quantitative aspects of plant metabolism in completely unperturbed whole plants.
Asunto(s)
Dióxido de Carbono/metabolismo , Nicotiana/metabolismo , Aminoácidos/química , Aminoácidos/aislamiento & purificación , Aminoácidos/metabolismo , Dióxido de Carbono/química , Isótopos de Carbono , Simulación por Computador , Glucosa/química , Glucosa/aislamiento & purificación , Glucosa/metabolismo , Espectrometría de Masas , Nicotina/química , Nicotina/aislamiento & purificación , Nicotina/metabolismo , Resonancia Magnética Nuclear Biomolecular , Fotosíntesis , Hojas de la Planta/química , Hojas de la Planta/metabolismo , Nicotiana/químicaRESUMEN
A heavily pregnant woman was treated with Revatio(®) (Sildenafil) against idiopathic pulmonary arterial hypertension, prior to and after her accouchement. To investigate the transfer of sildenafil into breast milk and its metabolism shortly before breastfeeding to the neonatal, a new analytical method was developed and validated, using liquid chromatography tandem mass spectrometry. Additionally, while using linear ion trap scan mode experiments, further metabolites could be identified. Sample preparation was carried out, using solid-phase extraction. For quantification of sildenafil and its major metabolite N-desmethylsildenafil, sildenafil-d8 was used as an internal standard. Within a time frame of 17h covering two Revatio(®) intakes and three breast milk samplings, a concentration range from 1.64 to 4.49ng/ml (sildenafil) and from 1.18 to 1.82ng/ml (N-desmethylsildenafil) could be observed. The current method proved to be accurate and precise in a very low concentration range and establishes the first reported determination of sildenafil and N-desmethylsildenafil in human breast milk.
Asunto(s)
Lactancia/metabolismo , Leche Humana/química , Citrato de Sildenafil/química , Citrato de Sildenafil/metabolismo , Cromatografía Liquida/métodos , Hipertensión Pulmonar Primaria Familiar/metabolismo , Femenino , Humanos , Embarazo , Espectrometría de Masas en Tándem/métodosRESUMEN
GTP cyclohydrolase I catalyses the transformation of GTP into dihydroneopterin 3'-triphosphate, which is the first committed precursor of tetrahydrofolate and tetrahydrobiopterin. The kinetically competent reaction intermediate, 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone, was used as substrate for single turnover experiments monitored by multiwavelength photometry. The early reaction phase is characterized by the rapid appearance of an optical transient with an absorption maximum centred at 320. This species is likely to represent a Schiff base intermediate at the initial stage of the Amadori rearrangement of the carbohydrate side-chain. Deconvolution of the optical spectra suggested four linearly independent processes. A fifth reaction step was attributed to photodecomposition of the enzyme product. Pre-steady state experiments were also performed with the H179A mutant which can catalyse a reversible conversion of GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone but is unable to form the final product, dihydroneopterin triphosphate. Optical spectroscopy failed to detect any intermediate in the reversible reaction sequence catalysed by the mutant protein. The data obtained with the wild-type and mutant protein in conjunction with earlier quenched flow studies show that the enzyme-catalysed opening of the imidazole ring of GTP and the hydrolytic release of formate from the resulting formamide type intermediate are both rapid reactions by comparison with the subsequent rearrangement of the carbohydrate side-chain which precedes the formation of the dihydropyrazine ring of dihydroneopterin triphosphate.
Asunto(s)
Escherichia coli/enzimología , GTP Ciclohidrolasa/metabolismo , Catálisis , Escherichia coli/genética , Formiatos/metabolismo , GTP Ciclohidrolasa/química , GTP Ciclohidrolasa/genética , Guanosina Trifosfato/metabolismo , Hidrólisis , Cinética , Mutación , Neopterin/análogos & derivados , Pteridinas/metabolismo , Nucleótidos de Pirimidina/metabolismo , Bases de Schiff/química , Bases de Schiff/metabolismo , Espectrofotometría Ultravioleta , EstereoisomerismoRESUMEN
6,7-Dimethyl-8-ribityllumazine synthase (lumazine synthase) catalyses the penultimate step in the biosynthesis of riboflavin. In Bacillus subtilis, 60 lumazine synthase subunits form an icosahedral capsid enclosing a homotrimeric riboflavin synthase unit. The ribH gene specifying the lumazine synthase subunit can be expressed in high yield. All amino acid residues exposed at the surface of the active site cavity were modified by PCR assisted mutagenesis. Polar amino acid residues in direct contact with the enzyme substrates, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione and 3,4-dihydroxy-2-butanone 4-phosphate, could be replaced with relative impunity with regard to the catalytic properties. Only the replacement of Arg127, which forms a salt bridge with the phosphate group of 3,4-dihydroxy-2-butanone 4-phosphate, reduced the catalytic rate by more than one order of magnitude. Replacement of His88, which is believed to assist in proton transfer reactions, reduced the catalytic activity by about one order of magnitude. Surprisingly, the activation enthalpy deltaH of the lumazine synthase reaction exceeds that of the uncatalysed reaction. On the other hand, the free energy of activation deltaG of the uncatalysed reaction is characterised by a large entropic term (TdeltaS) of -37.8 kJmol(-1), whereas the entropy of activation (TdeltaS) of the enzyme-catalysed reaction is -6.7 kJmol(-1). This suggests that the rate enhancement by the enzyme is predominantly achieved by establishing a favourable topological relation of the two substrates, whereas acid/base catalysis may play a secondary role.
Asunto(s)
Entropía , Complejos Multienzimáticos/metabolismo , Bacillus subtilis/enzimología , Secuencia de Bases , Sitios de Unión , Catálisis , Cartilla de ADN , Escherichia coli/enzimología , Complejos Multienzimáticos/genética , Mutagénesis Sitio-Dirigida , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismoRESUMEN
GTP cyclohydrolase I catalyses the hydrolytic release of formate from GTP followed by cyclization to dihydroneopterin triphosphate. The enzymes from bacteria and animals are homodecamers containing one zinc ion per subunit. Replacement of Cys110, Cys181, His112 or His113 of the enzyme from Escherichia coli by serine affords catalytically inactive mutant proteins with reduced capacity to bind zinc. These mutant proteins are unable to convert GTP or the committed reaction intermediate, 2-amino-5-formylamino-6-(beta-ribosylamino)-4(3H)-pyrimidinone 5'-triphosphate, to dihydroneopterin triphosphate. The crystal structures of GTP complexes of the His113Ser, His112Ser and Cys181Ser mutant proteins determined at resolutions of 2.5A, 2.8A and 3.2A, respectively, revealed the conformation of substrate GTP in the active site cavity. The carboxylic group of the highly conserved residue Glu152 anchors the substrate GTP, by hydrogen bonding to N-3 and to the position 2 amino group. Several basic amino acid residues interact with the triphosphate moiety of the substrate. The structure of the His112Ser mutant in complex with an undefined mixture of nucleotides determined at a resolution of 2.1A afforded additional details of the peptide folding. Comparison between the wild-type and mutant enzyme structures indicates that the catalytically active zinc ion is directly coordinated to Cys110, Cys181 and His113. Moreover, the zinc ion is complexed to a water molecule, which is in close hydrogen bond contact to His112. In close analogy to zinc proteases, the zinc-coordinated water molecule is suggested to attack C-8 of the substrate affording a zinc-bound 8R hydrate of GTP. Opening of the hydrated imidazole ring affords a formamide derivative, which remains coordinated to zinc. The subsequent hydrolysis of the formamide motif has an absolute requirement for zinc ion catalysis. The hydrolysis of the formamide bond shows close mechanistic similarity with peptide hydrolysis by zinc proteases.
Asunto(s)
Escherichia coli/enzimología , Formiatos/metabolismo , GTP Ciclohidrolasa/metabolismo , Guanosina Trifosfato/metabolismo , Pteridinas/metabolismo , Secuencia de Aminoácidos , Animales , Sitios de Unión , Catálisis , Cristalización , Cristalografía por Rayos X , Escherichia coli/genética , Formamidas/química , GTP Ciclohidrolasa/química , GTP Ciclohidrolasa/genética , Enlace de Hidrógeno , Hidrólisis , Cinética , Modelos Moleculares , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Mutación , Neopterin/análogos & derivados , Conformación Proteica , Estereoisomerismo , ZincRESUMEN
A herbal food supplement advertised as a potency pill was screened for the presence of PDE5 inhibitors. The resulting signals were characterised by UV, LC-MS in ESI-negative mode, and NMR spectroscopy using 1D and 2D experiments. Several substances were identified, bearing the basic chemical structure of sildenafil, but were not supposed to exhibit PDE5 inhibition. These compounds may be process-related impurities or by-products of different reaction steps in the synthesis of PDE5 analogues. As they were found to be present in different capsules at different concentrations, this is an example of the unreliable quality of dietary supplements.
Asunto(s)
Productos Biológicos/farmacología , Suplementos Dietéticos , Disfunción Eréctil/tratamiento farmacológico , Inhibidores de Fosfodiesterasa 5/farmacología , Pirazoles/farmacología , Pirimidinas/farmacología , Productos Biológicos/química , Productos Biológicos/aislamiento & purificación , Fosfodiesterasas de Nucleótidos Cíclicos Tipo 5/metabolismo , Suplementos Dietéticos/normas , Humanos , Masculino , Estructura Molecular , Inhibidores de Fosfodiesterasa 5/química , Inhibidores de Fosfodiesterasa 5/aislamiento & purificación , Pirazoles/química , Pirazoles/aislamiento & purificación , Pirimidinas/química , Pirimidinas/aislamiento & purificación , Relación Estructura-ActividadRESUMEN
A market surveillance study has been established by using different atomic spectrometric methods for the determination of selected elemental impurities of particular interest, to gain an overview about the quality of presently marketed drug products and their bulk drug substances. The limit tests were carried out with respect to the existing EMA guideline on the specification limits for residuals of metal catalysts or metal reagents. Also attention was given to the future implementation of two new chapters of the United States Pharmacopoeia (USP) stating limit concentrations of elemental impurities. The methods used for determination of metal residues were inductively coupled plasma-mass spectrometry (ICP-MS), inductively coupled plasma-optical emission spectrometry (ICP-OES), and atomic absorption spectrometry technologies (GFAAS, CVAAS, HGAAS). This article presents the development and validation of the methods used for the determination of 21 selected metals in 113 samples from drug products and their active pharmaceutical ingredients.
Asunto(s)
Contaminación de Medicamentos , Metales/análisis , Preparaciones Farmacéuticas/química , Espectrofotometría AtómicaRESUMEN
A dietary supplement sold in erotic shops was analysed. It contains dithiodesmethylcarbodenafil as the major component, which was already reported as an adulterant in dietary supplements. Additionally three more compounds were found and their structures were elucidated after isolation using NMR and mass spectroscopy. They were designated as isonitrosoprodenafil, dithiodesethylcarbodenafil and norcarbodenafil.
Asunto(s)
Suplementos Dietéticos/análisis , Contaminación de Medicamentos , Inhibidores de Fosfodiesterasa 5/aislamiento & purificación , Suplementos Dietéticos/normas , Espectroscopía de Resonancia Magnética/métodos , Espectrometría de Masas/métodos , Inhibidores de Fosfodiesterasa 5/análisis , Inhibidores de Fosfodiesterasa 5/química , Piperazinas/análisis , Piperazinas/aislamiento & purificación , Pirazoles/análisis , Pirazoles/aislamiento & purificación , Pirimidinas/análisis , Pirimidinas/aislamiento & purificaciónRESUMEN
We report a specific, fast and feasible method for the simultaneous determination of methyl mesilate (MMS), ethyl mesilate (EMS), isopropyl mesilate (IMS), methyl besilate (MBS) and ethyl besilate (EBS) in finished drug products by GC/MS. Sample preparation was carried out by liquid extraction. The analytes were directly injected into the chromatographic system and quantified with the internal standard method using methyl tosylate (MTS) as internal standard (ISTD). The method gives excellent sensitivity for all the alkyl and aryl esters at typical target analyte level, according to the acceptance criteria that are described in the Guideline on the Limits of Genotoxic Impurities which has been issued in 2007 by the European Medicines Agency (EMA). The average recovery for methanesulfonic acid esters (mesilates) was not lower than 71%, for benzenesulfonic acid esters (besilates) not lower than 94%. A linear range with R² ≥ 0.9998 has been established for concentrations between 0.01 and 1.33 µg/ml. Validation of the method was carried out on a sample matrix containing MMS, EMS, IMS, MBS and EBS at relevant levels and was further confirmed on finished products containing APIs as mesilate salts (Bromocriptine mesilate, Doxazosin mesilate).
Asunto(s)
Bencenosulfonatos/análisis , Contaminación de Medicamentos , Mesilatos/análisis , Mutágenos/análisis , Alquilación , Bencenosulfonatos/química , Cromatografía de Gases y Espectrometría de Masas , Límite de Detección , Mesilatos/química , Mutágenos/químicaRESUMEN
A new herbal product advertised as potency pill was sent for analysis by the local authority. The product was tested for the presence of potential derivatives of PDE-5 inhibitors, such as sildenafil, vardenafil, and tadalafil. Sildenafil analogues were identified, in which the piperazine ring and the sulfonyl group were replaced by a piperazinone and a hydroxyethyl structure, respectively. The chemical structures were established by LC-MS in ESI negative mode, UV and NMR spectroscopy (including DEPT, HSQC, HMBC, H,H-COSY, H,H-TOCSY and H,H-NOESY experiments). This is the first report of piperazinonafil and isopiperazinonafil as adulterant in an herbal food supplement.
Asunto(s)
Carbolinas/análisis , Suplementos Dietéticos/análisis , Contaminación de Alimentos , Imidazoles/análisis , Inhibidores de Fosfodiesterasa 5/análisis , Piperazinas/análisis , Preparaciones de Plantas/análisis , Sulfonas/análisis , Carbolinas/química , Contaminación de Medicamentos , Humanos , Imidazoles/química , Masculino , Inhibidores de Fosfodiesterasa 5/química , Piperazinas/química , Preparaciones de Plantas/química , Purinas/análisis , Purinas/química , Citrato de Sildenafil , Sulfonas/química , Tadalafilo , Triazinas/análisis , Triazinas/química , Diclorhidrato de VardenafilRESUMEN
Artemisinin from Artemisia annua has become one of the most important drugs for malaria therapy. Its biosynthesis proceeds via amorpha-4,11-diene, but it is still unknown whether the isoprenoid precursors units are obtained by the mevalonate pathway or the more recently discovered non-mevalonate pathway. In order to address that question, a plant of A. annua was grown in an atmosphere containing 700 ppm of 13CO2 for 100 min. Following a chase period of 10 days, artemisinin was isolated and analyzed by 13C NMR spectroscopy. The isotopologue pattern shows that artemisinin was predominantly biosynthesized from (E,E)-farnesyl diphosphate (FPP) whose central isoprenoid unit had been obtained via the non-mevalonate pathway. The isotopologue data confirm the previously proposed mechanisms for the cyclization of (E,E)-FPP to amorphadiene and its oxidative conversion to artemisinin. They also support deprotonation of a terminal allyl cation intermediate as the final step in the enzymatic conversion of FPP to amorphadiene and show that either of the two methyl groups can undergo deprotonation.
Asunto(s)
Antimaláricos/metabolismo , Artemisia annua/metabolismo , Artemisininas/metabolismo , Vías Biosintéticas , Ácido Mevalónico/metabolismo , Fosfatos de Poliisoprenilo/metabolismo , Sesquiterpenos/metabolismo , Antimaláricos/química , Antimaláricos/aislamiento & purificación , Artemisia annua/química , Artemisininas/química , Artemisininas/aislamiento & purificación , Dióxido de Carbono/metabolismo , Isótopos de Carbono , Malaria/tratamiento farmacológico , Estructura Molecular , Fitoterapia , Sesquiterpenos Policíclicos , Fosfatos de Poliisoprenilo/química , Sesquiterpenos/químicaRESUMEN
GTP cyclohydrolase II catalyzes the first dedicated step in the biosynthesis of riboflavin and appears to be a limiting factor for the production of the vitamin by recombinant Bacillus subtilis overproducer strains. Using error-prone PCR amplification, we generated a library of the B. subtilis ribA gene selectively mutated in the GTP cyclohydrolase II domain. The ratio of the GTP cyclohydrolase II to 3,4-dihydroxy-2-butanone synthase activities of the mutant proteins was measured. A mutant designated Construct E, carrying seven point mutations, showed a two-fold increase in GTP cyclohydrolase II activity and a four-fold increase in the K(m) value with GTP as the substrate. Using the analog 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-triphosphate as the substrate, the mutant showed a rate enhancement by a factor of about two and an increase in the K(m) value by a factor of about 5. A series of UV absorption spectra obtained in stopped-flow experiments using the wild-type and mutant enzymes revealed isosbestic points indicative of apparently perfect reactions, which were similar to the findings obtained with GTP cyclohydrolase II of Escherichia coli. Initial burst velocities obtained for the mutant and wild-type proteins were similar. The data suggest that the mutations present in Construct E are jointly conducive to the acceleration of a late step in the reaction trajectory, most probably the release of product from the enzyme.
Asunto(s)
GTP Ciclohidrolasa/genética , GTP Ciclohidrolasa/metabolismo , Riboflavina/biosíntesis , Bacillus subtilis/enzimología , Bacillus subtilis/genética , Bacillus subtilis/metabolismo , Proteínas Bacterianas/genética , Proteínas Bacterianas/metabolismo , Escherichia coli/enzimología , Escherichia coli/genética , GTP Ciclohidrolasa/deficiencia , Cinética , Mutagénesis Sitio-Dirigida , Mutación , Proteínas Recombinantes/metabolismo , Especificidad por SustratoRESUMEN
A synthetic gene specifying the catalytic domain of the Arabidopsis thaliana riboflavin synthase was expressed with high efficiency in a recombinant Escherichia coli strain. The recombinant pseudomature protein was shown to convert 6,7-dimethyl-8-ribityllumazine into riboflavin at a rate of 0.027 s-1 at 25 degrees C. The protein sediments at a rate of 3.9 S. Sedimentation equilibrium analysis afforded a molecular mass of 67.5 kDa, indicating a homotrimeric structure, analogous to the riboflavin synthases of Eubacteria and fungi. The protein binds its product riboflavin with relatively high affinity (Kd =1.1 microM). Product inhibition results in a characteristic sigmoidal velocity versus substrate concentration relationship. Characterization of the enzyme/product complex by circular dichroism and UV absorbance spectroscopy revealed a shift of the absorption maxima of riboflavin from 370 and 445 to 399 and 465 nm, respectively. Complete or partial sequences for riboflavin synthase orthologs were analyzed from 11 plant species. In each case for which the complete plant gene sequence was available, the catalytic domain was preceded by a sequence of 1-72 amino acid residues believed to function as plastid targeting signals. Comparison of all available riboflavin synthase sequences indicates that hypothetical gene duplication conducive to the two-domain architecture occurred very early in evolution.
Asunto(s)
Arabidopsis/enzimología , Riboflavina Sintasa/antagonistas & inhibidores , Riboflavina/química , Secuencia de Aminoácidos , Secuencia de Bases , Dominio Catalítico , Dicroismo Circular , Biología Computacional , Electroforesis en Gel de Poliacrilamida , Escherichia coli/metabolismo , Datos de Secuencia Molecular , Filogenia , Proteínas de Plantas/genética , Pteridinas/química , Proteínas Recombinantes/antagonistas & inhibidores , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Riboflavina Sintasa/química , Riboflavina Sintasa/genética , Homología de Secuencia de Aminoácido , Espectrofotometría UltravioletaRESUMEN
The dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase affords riboflavin and 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione. A pentacyclic adduct of two 6,7-dimethyl-8-ribityllumazines has been identified earlier as a catalytically competent reaction intermediate of the Escherichia coli enzyme. Acid quenching of reaction mixtures of riboflavin synthase of Methanococcus jannaschii, a paralog of 6,7-dimethyl-8-ribityllumazine synthase devoid of similarity with riboflavin synthases of eubacteria and eukaryotes, afforded a compound whose optical absorption and NMR spectra resemble that of the pentacyclic E. coli riboflavin synthase intermediate, whereas the circular dichroism spectra of the two compounds have similar envelopes but opposite signs. Each of the compounds could serve as a catalytically competent intermediate for the enzyme by which it was produced, but not vice versa. All available data indicate that the respective pentacyclic intermediates of the M. jannaschii and E. coli enzymes are diastereomers.
Asunto(s)
Archaea/enzimología , Escherichia coli/enzimología , Methanobacteriaceae/enzimología , Riboflavina Sintasa/metabolismo , Riboflavina/biosíntesis , Proteínas Arqueales/metabolismo , Proteínas de Escherichia coli/metabolismo , Riboflavina/química , EstereoisomerismoRESUMEN
[Structure: see text]. The IspG protein is known to catalyze the transformation of 2-C-methyl-d-erythritol 2,4-cyclodiphosphate into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the nonmevalonate pathway of isoprenoid biosynthesis. We have found that the apparent IspG activity in the cell extracts of recombinant Escherichia coli cells as observed by a radiochemical assay can be enhanced severalfold by coexpression of the isc operon which is involved in the assembly of iron-sulfur clusters. The recombinant protein was isolated by affinity chromatography under anaerobic conditions. With a mixture of flavodoxin, flavodoxin reductase, and NADPH as the reducing agent, stringent assay methods based on photometry or on 13C NMR detection of multiply 13C-labeled substrate/product ratios afforded catalytic activities greater than 60 nmol mg(-1) min(-1) for the protein "as isolated" (i.e., without reconstitution of any kind). Lower apparent activities were found using photoreduced deazaflavin as an artifactual electron donor, whereas dithionite was unable to serve as an artificial electron donor. The apparent Michaelis constant for 2-C-methyl-D-erythritol 2,4-cyclodiphosphate was 700 microM. The enzyme was inactivated by EDTA and could be reactivated by Mn2+. The pH optimum was at 9.0. The protein contained 2.4 iron ions and 4.4 sulfide ions per subunit. The replacement of any of the three conserved cysteine residues afforded mutant proteins which were devoid of catalytic activity and contained less than 6% of Fe2+ and less than 23% of S2- as compared to the wild-type protein. Sequence comparison indicates that putative IspG proteins of plants, the apicomplexan protozoan Plasmodium falciparum, and bacteria from the Bacteroidetes/Chlorobi group contain an insert of about 170-320 amino acid residues as compared with eubacterial enzymes.
Asunto(s)
Proteínas de Escherichia coli , Terpenos/metabolismo , Secuencia de Aminoácidos , Catálisis , Cromatografía de Afinidad , Eritritol/análogos & derivados , Eritritol/metabolismo , Escherichia coli , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/aislamiento & purificación , Proteínas de Escherichia coli/metabolismo , Flavodoxina/metabolismo , Hierro/química , Ácido Mevalónico/metabolismo , Datos de Secuencia Molecular , Mutagénesis Sitio-Dirigida , Mutación , NADH NADPH Oxidorreductasas/metabolismo , NADP/metabolismo , Resonancia Magnética Nuclear Biomolecular , Proteínas Recombinantes/aislamiento & purificación , Homología de Secuencia de Aminoácido , Sulfuros/químicaRESUMEN
Riboflavin synthase catalyses a mechanistically complex dismutation affording riboflavin and 5-amino-6-ribitylamino-2,4(1H,3H )-pyrimidinedione from 6,7-dimethyl-8-ribityllumazine. A pentacyclic adduct (compound 2 ) of two substrate molecules was used as substrate for pre-steady-state kinetic analysis. Whereas the wild-type enzyme catalyses the decomposition of compound 2 into a mixture of riboflavin and 5-amino-6-ribitylamino-2,4(1H,3H )-pyrimidinedione, as well as into two equivalents of 6,7-dimethyl-8-ribityllumazine, a H102Q mutant enzyme predominantly catalyses the former reaction. Stopped-flow experiments with this mutant enzyme failed to identify a reaction intermediate between compound 2 and riboflavin. However, the apparent rate constants for the formation of riboflavin as observed by stopped-flow and quenched-flow experiments were significantly different, thus suggesting that the reaction proceeds via a significantly populated intermediate, the absorbance of which is similar to that of compound 2 . An F2A mutant enzyme converts compound 2 predominantly into 6,7-dimethyl-8-ribityllumazine. Stopped-flow experiments using compound 2 as substrate indicated a slight and rapid initial increase in absorbance at 310 nm, followed by a slower decrease. This finding, in conjunction with different apparent rates for the formation of 6,7-dimethyl-8-ribityllumazine, suggests the involvement of a significantly populated intermediate in the transition between compound 2 and 6,7-dimethyl-8-ribityllumazine, the optical spectrum of which is similar to that of compound 1.
Asunto(s)
Riboflavina Sintasa/metabolismo , Escherichia coli/enzimología , Cinética , Mutación , Pteridinas/química , Pteridinas/metabolismo , Riboflavina Sintasa/genéticaRESUMEN
6,7-dimethyl-8-ribityllumazine synthase (lumazine synthase) catalyzes the condensation of 5-amino-6-ribitylamino-2,4-(1H,3H)-pyrimidinedione with 3,4-dihydroxy-2-butanone 4-phosphate, affording the riboflavin precursor, 6,7-dimethyl-8-ribityllumazine. Single turnover experiments monitored by multiwavelength photometry were performed with the recombinant lumazine synthase of Bacillus subtilis. Mixing of the enzyme with the pyrimidine type substrate is conducive to a hypsochromic shift as well as a decrease in absorbance of the heterocyclic substrate; the rate constant for that reaction is 0.02 s(-1) microM(-1). Rapid mixing of the complex between enzyme and pyrimidine type substrate with the second substrate, 3,4-dihydroxy-2-butanone 4-phosphate, is followed by the appearance of an early optical transient characterized by an absorption maxima at 330 nm of low intensity which was tentatively assigned as a Schiff base intermediate. The subsequent elimination of phosphate affords a transient with intense absorption maxima at 455 and 282 nm, suggesting an intermediate with an extended system of conjugated double bonds. The subsequent formation of the enzyme product, 6,7-dimethyl-8-ribityllumazine, is the rate-determining step.